BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34588.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491198 jgi|Araly1|491198|fgenesh2_kg.7__631__AT4G34588.1 1799 0.0
> Ahg491198 jgi|Araly1|491198|fgenesh2_kg.7__631__AT4G34588.1
Length=1268
Score = 1799 bits (974), Expect = 0.0
Identities = 1220/1326 (92%), Gaps = 68/1326 (5%)
Strand=Plus/Plus
Query 1 GATTTTTCTTCTATAAAAtctttctcctcaaccatttcaaagccccctcttctctccttc 60
||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1 GATTTTTCTTCTATAAATTCTTCCTCCTAAACCATTTCAAAGCCCCCTCTTCTCTCCTTC 60
Query 61 tctcccttttctctctctctcgaagatatcgcctttaattcc-t---tcttcttcttctg 116
||| | ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 61 TCT--C---TCTCTCTCTCTCGAAGATATCGCCTTTAATTCCTTCCATCTTCTTCTTCTG 115
Query 117 atttctTCAAAGATTCATTTCTTAGAGATCTCAGCTTCTGTAAGAGTAGGCTAGCTACCa 176
|||||||||||||||||||||||| |||||||||||||||| |||||| | | ||||||
Sbjct 116 ATTTCTTCAAAGATTCATTTCTTAAAGATCTCAGCTTCTGTGAGAGTA-G-T--CTACCA 171
Query 177 aaaaaaaagaaa-tagaaaaaaaCATTGATGCTTAATCAGCAGTTCTTGGTGTTTGAGAC 235
|||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 172 AAAAAAAAAAAATTAGAAAAAAACCTTGATGCTTAATCAGCAGTTCTTGGTGTTTGAGAC 231
Query 236 ACATGTCTCCAATAATACTCAGTGAGATCTTTCTCTCTGGGTTTATGTTAAATTCCACAA 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ACATGTCTCCAATAATACTCAGTGAGATCTTTCTCTCTGGGTTTATGTTAAATTCCACAA 291
Query 296 TCAGGCGCAGGACCCATCTTGTTCAATCTTTCTCTGTTGTCTTCCTTTACTGGCTTTACT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TCAGGCGCAGGACCCATCTTGTTCAATCTTTCTCTGTTGTCTTCCTTTACTGGCTTTACT 351
Query 356 ATGTCTCATGATCTCTGAACTTATCTCCAGTTTTATATCTATACGCATAATTACAACAAA 415
||||||| | || | || ||| | ||||||||||||||||||| ||||||
Sbjct 352 ATGTCTC---A----TG-A-TT-TCT---G---AATATCTATACGCATAATTAAAACAAA 395
Query 416 ACCCTAGTTTCTTTTCAAAT-TTCTCTTCTTCGTTTTTCGTCATCTGGGTCCTGTCCTGT 474
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 396 ACCCTAGTTTCTTTTCAAATCTTTTCTTCTTCGTTTTTCGTCATCTGGGTCCTGTCCTG- 454
Query 475 TCTGTTGTGTCTTGTTCTGTTCTGTTTTTAATTCCCCTAAAAACCCATTTTAAAATATTT 534
|| |||| || |||||||||||| | | |||||||||| ||||||||
Sbjct 455 TC--TTGT-TC-TGTTCTGTTCTG--------T----T---AACCCATTTTTAAATATTT 495
Query 535 TATCTCTCTTCTCTTaaaaaaaaCTCTTCCCTGTTTTTGTTTGTGTGTTACTAAATGGAA 594
|||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 496 CATCTCTCTTCTCGTAAAGAAAAGGCTTTTCTGTTTTTGTTTGTGTGTTACTAAATGGAA 555
Query 595 TCGTCGTCGTCGGGAACAACTTCGTCGACGATTCAAACGTCGTCAGGATCGGAGGAGAGT 654
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 556 TCGTCGTCGTCGGGAACAACTTCTTCGACGATTCAAACATCGTCAGGGTCGGAGGAGAGT 615
Query 655 CTCATGGAGCAGAGGAAACGTAAACGGATGCTCTCAAACCGTGAATCTGCAAGGAGATCA 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 CTCATGGAGCAGAGGAAACGTAAACGGATGCTCTCAAACCGTGAATCTGCAAGGAGATCG 675
Query 715 AGAATGAAGAAACAAAAGCTCCTAGACGATCTAACGGCTCAGGTTAATCATCTGAAAAAA 774
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 676 AGGATGAAGAAACAAAAGCTCCTCGACGATCTAACGGCTCAGGTTAATCATCTGAAAAAA 735
Query 775 GAGAACACGGAGATCGTGACAAGTGTCAGCATCACAACGCAACACTACCTAACCGTTGAA 834
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GAGAACACCAAGATCGTGACAAGTGTCAGCATCACAACGCAACACTACCTAACCGTTGAA 795
Query 835 GCAGAGAACTCTGTTCTCAGAGCTCAGCTTGATGAACTTAACCACAGGCTCCAATCTCTC 894
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 796 GCAGAGAACTCTGTTCTCAGAGCTCAGCTCGATGAACTTAACCACAGGCTCCAATCTCTC 855
Query 895 AACGACATCATCGAGTTCCTCGACAGTAGcaacaacaacaacaacaacaacaTGGGCATG 954
||||||||||||||||| |||||||||| | |||||||||||||| ||||||||
Sbjct 856 AACGACATCATCGAGTTTCTCGACAGTA--A-CAACAACAACAACA------TGGGCATG 906
Query 955 TGTTCGAACCCTCTGGTTGGTTTGGAGTGTGATGATTTCTTCGTGAATCAGATGAACATG 1014
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 907 TGTTCGAACCCTCTGGTTGGTTTGGAGTGTGATGATTTCTTTGTGAATCAGATGAACATG 966
Query 1015 TCTTATATTATGAACCAGCCTCTCATGGCGTCTTCTGATGCTTTAATGTATTAAATGTGG 1074
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TCGTACATGATGAACCAGCCTCTCATGGCGTCTTCTGATGCTTTAATGTATTAAATGTGG 1026
Query 1075 ACCT-AAAAACCCCCTCGAAATCACAAAGAAATGGGGCCGTTTTTATTTGTCCGATTTAG 1133
|||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1027 ACCTGAAAAACCC--TCGAAATCACAAAAAAATGGGGCCGTTTTTATTTGTCCGATTTAG 1084
Query 1134 AGACATGTCCAAAGAGAGAGATTTATATATAAAAATGGGTCtgttgtttgatttgtttcc 1193
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1085 AGACATGTCCAAAGAGAGAGATTTATATATGAAAATGGGTCTGTTGTTTGATTTGTTTCC 1144
Query 1194 atttcaaatttttgtttgttt---gggtccgttttAGGCGTTAGGTATCTCTAAGCATCA 1250
||||||| ||||| ||| ||| ||||||||||||||||||||||||||| | ||||||
Sbjct 1145 ATTTCAATTTTTTTTTTTTTTTTTGGGTCCGTTTTAGGCGTTAGGTATCTC-A-GCATCA 1202
Query 1251 TCGTTATGAGTGTGTCTGTAATAAAGGCTCTGTTGCCGCATGAGTACAAAGTGTTTTCTT 1310
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TCGTTATGAGTGTGTTTGTAATAAAGGCTCTGTTGCCGCATGAGTACAAAGTGTTTTCTT 1262
Query 1311 AATATT 1316
||||||
Sbjct 1263 AATATT 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5