BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34600.1
Length=548
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328280 jgi|Araly1|328280|fgenesh1_pm.C_scaffold_7000507 363 1e-99
> Ahg328280 jgi|Araly1|328280|fgenesh1_pm.C_scaffold_7000507
Length=249
Score = 363 bits (196), Expect = 1e-99
Identities = 237/255 (93%), Gaps = 9/255 (4%)
Strand=Plus/Plus
Query 56 ATGGGTTTGTTGCCATTGGTGAAGAAACTAGGTTTCATCATCTTTCTTC-TAGTTTCAGC 114
|||||||| ||||||||||||||||||||||| || |||||||||||| || |||||||
Sbjct 1 ATGGGTTTATTGCCATTGGTGAAGAAACTAGG-TT--TCATCTTTCTTCTTA-TTTCAGC 56
Query 115 TTCAGCGTTTGCTCTCTGTTCTGCAGGCCGATCATCCATTTTAATCTATAGCCAAGAAGA 174
||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||
Sbjct 57 TTCAGCGTTTGCTCTCTCTTCTGCAGGACGATCATCCATTCTAATCTATAGCCAAGAAGA 116
Query 175 TGATCATCCCGAGGTAGTAGAAAGAAGAATACATGAGCATGAGAGAATTCT-GAGAATGA 233
||||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||||
Sbjct 117 TGATCATCCAGAGGTGGTGGAAAGAAGAATACATGAGCATGAGAGAAT-CTTGAGAATGA 175
Query 234 ATTCAAG-AGACTATGGCCACTCCAGTCCTAAACCAAAGCTCGTGAGACCTCCTTTCAAG 292
||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 176 ATTCA-GTAGACTATGGCCACTTCAGTCCTAAACCAAAGCTCGTGAGGCCTCCTTTCAAG 234
Query 293 CTTATTCCCAACTGA 307
|||||||||||||||
Sbjct 235 CTTATTCCCAACTGA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19993528636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5