BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G34620.1

Length=650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944436 jgi|Araly1|944436|scaffold_700665.1                        577    4e-164


> Ahg944436 jgi|Araly1|944436|scaffold_700665.1
Length=384

 Score =  577 bits (312),  Expect = 4e-164
 Identities = 361/385 (94%), Gaps = 2/385 (1%)
 Strand=Plus/Plus

Query  60   ACCTCAATTTCCAAGCAGAGATGACGGTGAAGATAAGGCTCGCGCGTCTTGGTTGTAAAC  119
            |||||| |||||||||||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct  1    ACCTCAGTTTCCAAGCAGAAATGACGGTGAAGATAAGGCTGGCGCGTTTTGGTTGTAAAC  60

Query  120  ACCGACCCTTCTATCGTGTAGTTGTCGCCGATGAAAAATCGCGCAGGGACGGTAAACAAA  179
            | |||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct  61   ATCGACCCTTCTATCGTGTAGTTGCCGCCGATGACAAATCGCGGAGGGACGGTAAACAAA  120

Query  180  TCGAGGTGTTAGGCTTTTATGATCCACTCCAAGGCAAAGAAGATGCGGATAGAGTGAGCC  239
            ||||||| ||||| |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct  121  TCGAGGTTTTAGGGTTTTATGATCCACTCCAAGGGAAAGAAGATGCGAATAGAGTGAGCC  180

Query  240  TCAAATTCGACAGAATCAAGTACTGGTTATCTGTTGGAGCTCAACCAACAGACACAGTGG  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  181  TCAAATTCGACAGAATCAAGTACTGGTTATCTGTTGGAGCTCAACCAACAGACTCAGTGG  240

Query  300  AAAGCATGCTTTTCAGGGCCGGTTTGATACCACCAAAGCCTATGGTAGTGGTCGGTTCGA  359
            |||  ||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct  241  AAAATATGCTGTTCAGGGCCGGTTTGATACCCCCAAAGTCTATGGTAGTGGTTGGTTCGA  300

Query  360  AAAATGGGCAG-AAGTCTACGAGCCAACATGTTTCACCCATTACAGGTGAAATCTTGAAC  418
            ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  301  AAAATGGGCAGCAA-TCTACAAGCCAACATGTTTCACCCATTACAGGTGAAATCTTGAAC  359

Query  419  TAAGAGTGTTGATGCGTTGAGCAAG  443
            || ||||||||||||| ||||||||
Sbjct  360  TAGGAGTGTTGATGCGCTGAGCAAG  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23826823125


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5