BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34630.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491192 jgi|Araly1|491192|fgenesh2_kg.7__625__AT4G34630.1 773 0.0
> Ahg491192 jgi|Araly1|491192|fgenesh2_kg.7__625__AT4G34630.1
Length=683
Score = 773 bits (418), Expect = 0.0
Identities = 606/689 (88%), Gaps = 44/689 (6%)
Strand=Plus/Plus
Query 4 CAGTCTTGAAAAATCAAAGAAGCAACCTCTAAACAACACACAATTTCG-AAAATGGCGCA 62
||||||||||||||||||||||||||| || ||||| | ||||||| | ||||||||| |
Sbjct 1 CAGTCTTGAAAAATCAAAGAAGCAACCACTTAACAA-A-ACAATTTGGAAAAATGGCGAA 58
Query 63 GCGATCTAGGGTTATCACCATGTCTCCTCTCATTCT----C-----GAT-CAA--GAAGT 110
|||||||||||||| |||||||||||||||||||| | ||| || ||| |
Sbjct 59 TCGATCTAGGGTTATTACCATGTCTCCTCTCATTCTCAACCAGGAAGATGAAATCGAACT 118
Query 111 TGATCTCGATCTCTGGGAAGTTGTTAATCCTTCTGATGGCGAGTTCTCCGACGATTCTTT 170
|||||||||||||||||||| ||||||||||| || ||||| |||||||| ||||||||
Sbjct 119 CGATCTCGATCTCTGGGAAGTCGTTAATCCTTCCGACGGCGATTTCTCCGAGGATTCTTT 178
Query 171 CTCCGTCGATAGTCTTTCCGACGATGACGTCATATCTCTTGACGACGCTTCCTTTGTCGC 230
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 179 CTCCGTCGATAGTCTTTCCGATGATGACGTCATATCTCTTGACGACGCTTCCTTTGTCTC 238
Query 231 ACCCTCTGTCATTTCTCCGCCGCATGAGATAATTCCTATTGCTGACGGTGGTGATCTCGC 290
||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |
Sbjct 239 ACCGACTGTCATTTCTCCGCCGCCTGAGATAATTCCTGTTGCTGACGGTTGTGATCTCAC 298
Query 291 CGTGGATCTGgatggtgatgatgatgttggcgatgatgtcgttcgcgatgaagttgatga 350
|||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||
Sbjct 299 CGTGGATCTGGATGGTGATG--G-TGTTGGGGATGATGTCGTCCGCGATGAAGTTGATGA 355
Query 351 gaatgatcttggatgGTCTCAGCAGCGGATGATGTTTCTCGGTGGAGGTTCTGGTTATTC 410
|||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 356 GAATGATCTTGGATGGGCTCAACGGCGGATGATGTTTCTCGGTGGAGGTTCTGGTTATTC 415
Query 411 TGTTGGAATTACGTACGGAGAT-AGTGTTAATGACGACGGCGAAGAAGATCGCG------ 463
|||||||||||||||||||||| | ||| ||||| |||||||||||||||||||
Sbjct 416 TGTTGGAATTACGTACGGAGATTA-TGTGAATGATGACGGCGAAGAAGATCGCGGTGGTG 474
Query 464 A-G-T----A---CGACGATTCGTATGATCTTGACGAAGAGTTGGTTCCGCGTAGCGTGA 514
| | | | ||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 475 AAGATGGTGAATACGACGATTCTTATGATCTAGACGAAGAGTTGGTTCCGCGTAGTGTGA 534
Query 515 GTAAGAAGGTGGGGAGACAAAGGATGAGGAAACTGGGGAAAAGAGCAATCGCCAAGGTCT 574
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 535 ACAAGAAGGTGGGGAGACAGAGGATGAGGAAAGTGGGGAAAAGAGCAATCGCCAAGGTCT 594
Query 575 ATGCCTCGAAGAT-AT--CTCCGTTTT-----T-GAAGCCTGGTATCGTTCGTGGTAAGC 625
|||||||||||| || ||||||||| | ||| ||||||| ||||||||||||||
Sbjct 595 ATGCCTCGAAGAAGATGTCTCCGTTTTCGCACTTGAAACCTGGTAGCGTTCGTGGTAAGC 654
Query 626 ATGGTCTCGGCATGAAATTCAAGTGCTGA 654
|||||||||||||||||||||||||||||
Sbjct 655 ATGGTCTCGGCATGAAATTCAAGTGCTGA 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5