BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34640.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944434 jgi|Araly1|944434|scaffold_700663.1 2047 0.0
Ahg491190 jgi|Araly1|491190|fgenesh2_kg.7__623__AT4G34650.1 1197 0.0
> Ahg944434 jgi|Araly1|944434|scaffold_700663.1
Length=1284
Score = 2047 bits (1108), Expect = 0.0
Identities = 1209/1259 (96%), Gaps = 2/1259 (0%)
Strand=Plus/Plus
Query 181 TTTCTGAATCAAAATTTTCTGGAAACAATGGGGAGCTTGGGGACGATGCTGAGATATCCG 240
||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCTGATTC-AAA-TTTCTGGAAACAATGGGGAGCTTGGGGACGATGCTGAGATATCCG 58
Query 241 GATGACATATATCCGCTCCTGAAGATGAAACGAGCGATTGAGAAAGCGGAGAAGCAGATC 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GATGATATATATCCGCTCCTGAAGATGAAACGAGCGATTGAGAAAGCGGAGAAGCAGATC 118
Query 301 CCTCCTGAGCCACACTGGGGTTTCTGCTATTCGATGCTCCACAAGGTTTCTCGAAGCTTT 360
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 119 CCCCCTGAGCCACACTGGGGTTTTTGCTATTCGATGCTCCACAAGGTTTCTCGAAGCTTT 178
Query 361 TCTCTCGTTATTCAGCAACTCAACACCGAGCTCCGTAACGCCGTGTGTGTGTTCTACTTG 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 TCTCTCGTTATTCAGCAACTCAACACCGAGCTTCGTAACGCCGTGTGTGTGTTCTACTTG 238
Query 421 GTTCTCCGAGCTCTTGATACTGTTGAGGATGATACTAGCATACCAACTGATGAAAAGGTT 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 239 GTTCTCCGAGCTCTTGATACTGTTGAGGATGATACAAGCATACCAACTGATGAAAAGGTT 298
Query 481 CCCATCCTGATAGCTTTTCACCGGCACATATACGATACTGATTGGCATTATTCATGTGGT 540
||||||||||||||||| ||||||||| ||||| | ||||| ||||||||||||||||||
Sbjct 299 CCCATCCTGATAGCTTTCCACCGGCACTTATACAACACTGACTGGCATTATTCATGTGGT 358
Query 541 ACGAAGGAGTACAAGATTCTAATGGACCAATTTCACCATGTTTCTGCAGCTTTTTTGGAA 600
||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 ACGAACGAGTACAAGGTTCTAATGGACCAATTTCACCATGTTTCTGCAGCCTTTTTGGAA 418
Query 601 CTTGAAAAAGGGTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTTGAAAAAGGGTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATG 478
Query 661 GCCAAGTTTATCTGCCAAGAGGTAGAAACTGTTGATGACTACGATGAATACTGCCACTAT 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCCAAGTTTATCTGCCAGGAGGTAGAAACTGTTGATGACTACGATGAATACTGCCACTAT 538
Query 721 GTTGCTGGGCTTGTTGGTTTAGGTTTGTCGAAACTCTTCCTCGCTGCAGGATCAGAGGTT 780
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 539 GTTGCTGGGCTTGTGGGTTTAGGTTTGTCGAAACTCTTCCTCGCAGCTGGATCAGAGGTT 598
Query 781 TTGACACCAGATTGGGAGGCGATTTCCAATTCAATGGGTTTATTTCTGCAGAAAACAAAC 840
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 TTGACACCAAATTGGGAGGCGATTTCCAATTCAATGGGTTTATTTCTACAGAAAACAAAC 658
Query 841 ATTATCAGAGATTATCTTGAGGACATTAATGAGATACCAAAATCCCGCATGTTTTGGCCT 900
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATTATCAGAGATTACCTTGAGGACATTAATGAGATACCAAAATCCCGCATGTTTTGGCCT 718
Query 901 CGCGAGATTTGGGGCAAATATGCTGACAAGCTTGAGGATTTAAAATACGAGGAGAACACA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 CGCGAGATTTGGGGCAAATATGCTGACAAGCTTGAGGATTTAAAATACGAGGAGAACTCA 778
Query 961 AACAAATCCGTACAGTGCTTAAATGAAATGGTTACCAATGCGTTGATGCATATTGAAGAT 1020
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACCAAATCCGTACAGTGCTTGAATGAAATGGTTACCAATGCGTTGATGCATATTGAAGAT 838
Query 1021 TGCCTGAAATACATGGTTTCCTTGCGTGATCCTTCCATATTTCGGTTCTGTGCCATCCCT 1080
|||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||||
Sbjct 839 TGCCTGAAATACATGGCTGCGTTGCGTGATCCTTCCATATTTCGGTTCTGCGCCATCCCT 898
Query 1081 CAGATCATGGCGATTGGAACACTTGCATTATGCTATAACAATGAACAAGTATTCAGAGGC 1140
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 CAGATCATGGCGATTGGAACACTTGCATTATGCTATAACAATGTACAAGTATTCAGAGGC 958
Query 1141 GTTGTGAAACTGAGGCGAGGTCTTACTGCTAAAGTCATTGATCGTACAAAGACAATGGCT 1200
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 959 GTTGTGAAACTGAGGCGAGGTCTAACTGCTAAAGTCATTGATCGCACAAAGACAATGGCT 1018
Query 1201 GATGTCTATGGTGCTTTCTATGATTTTTCCTGCATGCTGAAGACAAAGGTTGACAAGAAC 1260
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1019 GATGTCTATGGTGCGTTCTATGATTTCTCTTGCATGCTGAAGACAAAGGTTGACAAGAAC 1078
Query 1261 GATCCAAATGCCAGTAAGACACTAAACCGACTTGAAGCCGTTCAGAAACTCTGCAGAGAC 1320
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 1079 GATCCAAATGCTAGTAAGACACTAAACCGACTCGAAGCAGTTCAGAAACTCTGCAAAGAC 1138
Query 1321 GCTGGAGTTCTTCAAAACAGAAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTC 1380
||||||| || || ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1139 ACTGGAGTCCTCCATAACAGAAAATCATATGTTAATGACAAAGGACAACCAAACAATGTC 1198
Query 1381 TTTATTATAATGGTTGTGATTCTACTGGCCATAGTCTTTGCATATCTCAGAGCAAACTG 1439
||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1199 TTTCTCATAATGGTTGTGATTCTACTGGCGATAGTCTTTGCATATCTCAGAGCAACCTG 1257
> Ahg491190 jgi|Araly1|491190|fgenesh2_kg.7__623__AT4G34650.1
Length=1292
Score = 1197 bits (648), Expect = 0.0
Identities = 1052/1242 (85%), Gaps = 48/1242 (4%)
Strand=Plus/Plus
Query 208 ATGGGGAGCTTGGGGACGATGCTGAGATATCCGGATGACATATATCCGCTCCTGAAGATG 267
||||| |||||| | ||||| ||||| | |||||||| ||||||||||| ||||| ||
Sbjct 1 ATGGGAAGCTTGAGTACGATTTTGAGACACCCGGATGAGTTATATCCGCTCTTGAAGTTG 60
Query 268 AAACGAGCGATTGA-GAAAGCGGAGAAGCAGATCCCTCCT-GAGCCACACTGGGGTTTCT 325
|||| |||||| | |||||| ||||||||||||| || |||||||||| | |||||
Sbjct 61 AAACTTGCGATT-ACGAAAGCTCAGAAGCAGATCCC-ACTAGAGCCACACTTAGCTTTCT 118
Query 326 GCTATTCGATGCTCCACAAGGTTTCTCGAAGCTTTTCTCTCGTTATTCAGCAACTCAACA 385
| ||||| ||||||||||| |||||| |||||||||||| |||||||| ||||| ||
Sbjct 119 GTTATTCAATGCTCCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCA 178
Query 386 CCGAGCTCCGTAACGCCGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG 445
||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 CCGAGCTTCGTAACGCAGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTG 238
Query 446 AGGATGATACTAGCATACCAACT-G-ATGAAAAGGTTCCCATCCTGATAGCTTTTCACCG 503
||||||| || |||||||||| | | | ||| ||||| || ||||||||||| |||||
Sbjct 239 AGGATGACACAAGCATACCAA-TGGAAACCAAA-GTTCCAATTCTGATAGCTTTCCACCG 296
Query 504 GCACATATACGATACTGATTGGCATTAT-TCATGTGGTACGAAGGAGTAC-AAGATTCTA 561
||| |||||||| || ||||||| | ||||||||||| || || ||| ||| |||||
Sbjct 297 TCACTTATACGATGGTGGCTGGCATT-TCTCATGTGGTACAAAAGATTACAAAG-TTCTA 354
Query 562 ATGGACCAATTTCACCATGTTTCTGCAGCTTTTTTGGAACTTGAAAAAGGGTATCAAGAG 621
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 355 ATGGACCAATTTCACCATGTTTCTGCAGCTTTTCTGGAACTTGAAAAAGGGTATCAAGAG 414
Query 622 GCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGCCAAGTTTATCTGCCAAG-A 680
||||| || || || |||| ||||||||||||||| ||||||||||| || ||| ||| |
Sbjct 415 GCTATTGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGC-AAGGA 473
Query 681 GGTAGAAACTGTTGATGACTACGATGAATACTGCCACTATGTTGCTGGGCTTGTTGGTTT 740
||||||||| |||||||||| |||||||||||||| |||| ||| || ||||| |||||
Sbjct 474 GGTAGAAACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTGGGTTT 533
Query 741 AGGTTTGTCGAAACTCTTCCTCGCTGCAGGA-TCAGAGGTTTTGACACCAGATTGGGAGG 799
||||||||| ||| ||||| ||||| | ||| | || | |||| ||||||||| ||
Sbjct 534 AGGTTTGTCAAAAATCTTCATCGCTTC-GGAATTGGAAATACTGACTCCAGATTGGAAG- 591
Query 800 C-GATTTCCAATTCAATGGGTTTATTTCTGCAGAAAACAAACATTATCAGAGATTATCTT 858
| |||||| ||||| | ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 592 CAGATTTCAAATTCTACAGGTTTATTTCTCCAGAAAACAAACATTATCAAAGATTATCTT 651
Query 859 GAGGACATTAATGAGATACCAAAATCCCGCATGTTTTGGCCTCGCGAGATTTGGGGCAAA 918
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 652 GAAGACATTAATGAGATACCAAAATCGCGCATGTTTTGGCCTCGTGAGATTTGGGGGAAA 711
Query 919 TATGCTGACAAGCTTGAGGATTTAAAATACGAGGAGAACA-CAA-ACAAATCCGTACAGT 976
|||| |||||| || ||||| |||||| | |||||||| | ||| |||| | || ||||
Sbjct 712 TATGTTGACAATCTCGAGGACTTAAAAAATGAGGAGAA-ATCAACACAAG-CAGTGCAGT 769
Query 977 G-CTTAAATGAAATGGTTACCAATGCGTTGA-TGCATATTGAAGATTGCCTGAAATACAT 1034
| || |||||||||||| || |||||||||| | ||| |||||||||| |||||| |||
Sbjct 770 GTCT-AAATGAAATGGTCACTAATGCGTTGACT-CATGTTGAAGATTGTTTGAAAT-CAT 826
Query 1035 -GGTTTCCTTGCGTGATCCTTCCATATTTCGGTTCT-GTGCCATCCCTCAGATCATGGCG 1092
|| ||| |||||||||||| | ||||||| || || ||||||||||||||||| |||||
Sbjct 827 TGGCTTCATTGCGTGATCCTGCAATATTTCAGT-CTTGTGCCATCCCTCAGATCGTGGCG 885
Query 1093 ATTGGAACACTTGCATTATGCTATAACAATG-AACAAGTATTCAGAGGCGTTGTGAAACT 1151
|||||||||||| |||||||||||||||||| || ||||||| |||||||| |||| |||
Sbjct 886 ATTGGAACACTTACATTATGCTATAACAATGTAA-AAGTATTTAGAGGCGTCGTGAGACT 944
Query 1152 GAGGCGAGGTCTTACT-GCTAAAGTCATTGATCGTACAAAGACAATGGCTGATGTCTATG 1210
||| |||||||| | | |||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 945 GAGACGAGGTCTAA-TAGCTAAAGTAATTGATCGCACAAAGACAATGGATGATGTCTATG 1003
Query 1211 GTGCTTTCTATGATTTTTCCTGCATGCTG-AAGACAAAGGTTGACAAGAACGATCCAAAT 1269
|||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1004 GTGCGTTCTATGATTTTTCTTGCATGCTACAA-ACAAAGGTTGACAAGAACGATCCAAAT 1062
Query 1270 GCCA-GTAAGACACTAAACCGACTTGAAGCCGTTCA-GAAACTCTGCAGAGACGCTGGAG 1327
|||| | || ||| |||||||||| ||| || | || |||| | |||||||| |||||
Sbjct 1063 GCCATGAAA-ACATTAAACCGACTCGAAACCAT-CAAGAAAGTTTGCAGAGAAAATGGAG 1120
Query 1328 TTCTTCA-AAACAGAAAATCTTATGTTAATGAC-AAAGGACAA-CCAAA-CAGTGTCTTT 1383
| ||||| ||| ||||||||||||||||| || ||| |||| |||| | | |||||
Sbjct 1121 TCCTTCACAAA-AGAAAATCTTATGTTAACGATGAAAC-ACAATCCAAGGC--TATCTTT 1176
Query 1384 ATTATAATGGTTGTGATTCTACTGGCCATAGTCTTTGCATAT 1425
|| ||||| ||||| ||||||||||||||||| ||| ||||
Sbjct 1177 GTTGTAATGTTTGTGCTTCTACTGGCCATAGTCGTTGTATAT 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5