BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34650.1
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491190 jgi|Araly1|491190|fgenesh2_kg.7__623__AT4G34650.1 2039 0.0
Ahg944434 jgi|Araly1|944434|scaffold_700663.1 1160 0.0
> Ahg491190 jgi|Araly1|491190|fgenesh2_kg.7__623__AT4G34650.1
Length=1292
Score = 2039 bits (1104), Expect = 0.0
Identities = 1231/1293 (95%), Gaps = 6/1293 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAGCTTGAGTACGATTTTGAGACATCCGGATGAGTTATATCCGCTCTTGAAGTTG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGCTTGAGTACGATTTTGAGACACCCGGATGAGTTATATCCGCTCTTGAAGTTG 60
Query 61 AAACTTGCGATTACGAAAGCTCAGAAGCAGATTCCACTTGAGCCACACTTAGCTTTCTGT 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 61 AAACTTGCGATTACGAAAGCTCAGAAGCAGATCCCACTAGAGCCACACTTAGCTTTCTGT 120
Query 121 TATTCAATTCTTCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCACC 180
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATTCAATGCTCCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCACC 180
Query 181 GAGCTTCGTAACGCCGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTGAG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGCTTCGTAACGCAGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTGAG 240
Query 241 GATGACACAAGCGTACCAGTGGAGATCAAAGTTCCAATTCTGATAGCTTTCCACCGTCA- 299
|||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 241 GATGACACAAGCATACCAATGGAAACCAAAGTTCCAATTCTGATAGCTTTCCACCGTCAC 300
Query 300 TATATACGATGGTGACTGGCATTTTTCATGTGGTACAAAAGAGTATAAACTTCTAATGGA 359
| |||||||||||| ||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 301 T-TATACGATGGTGGCTGGCATTTCTCATGTGGTACAAAAGATTACAAAGTTCTAATGGA 359
Query 360 CCAATTTCACCATGTTTCTGCAGCTTTTCTGAAACTTGAAAAAGGGTATCAAGAGGCTAT 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 CCAATTTCACCATGTTTCTGCAGCTTTTCTGGAACTTGAAAAAGGGTATCAAGAGGCTAT 419
Query 420 TGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGAGGTAGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGAGGTAGA 479
Query 480 AACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTTGGTTTAGGTTT 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 AACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTGGGTTTAGGTTT 539
Query 540 GTCAAAAATCTTCATTGCTTCGGAATTAGAAATACTGACTCCAGATTGGAAGCAGATTTC 599
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GTCAAAAATCTTCATCGCTTCGGAATTGGAAATACTGACTCCAGATTGGAAGCAGATTTC 599
Query 600 AAATTCTACAGGTTTATTTCTGCAGAAAACAAACATTATCAAAGATTATCTTGAAGACAT 659
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAATTCTACAGGTTTATTTCTCCAGAAAACAAACATTATCAAAGATTATCTTGAAGACAT 659
Query 660 TAATGAGAGACCAAAGTCGCGCATGTTTTGGCCTCGTGAGATTTGGGGAAAATATGTTGA 719
|||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 TAATGAGATACCAAAATCGCGCATGTTTTGGCCTCGTGAGATTTGGGGGAAATATGTTGA 719
Query 720 CAAACTTGAGGACTTCAAAAATGAGGAGAAAGCTACAAAAGCAGTGCAGTGTTTGAATGA 779
||| || |||||||| ||||||||||||||| | ||| |||||||||||||| | |||||
Sbjct 720 CAATCTCGAGGACTTAAAAAATGAGGAGAAATCAACACAAGCAGTGCAGTGTCTAAATGA 779
Query 780 AATGGTCACTAATGCATTGAATCATGTTGAAGATTGTTTGAAATCCTTGGCTTCACTGCG 839
||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 780 AATGGTCACTAATGCGTTGACTCATGTTGAAGATTGTTTGAAATCATTGGCTTCATTGCG 839
Query 840 TGATCCTGCAATATTTCAGTCTTGCGCCATCCCTCAGATCGTGGCGATTGGAACACTTGC 899
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 840 TGATCCTGCAATATTTCAGTCTTGTGCCATCCCTCAGATCGTGGCGATTGGAACACTTAC 899
Query 900 GTTATGCTATAACAATGTACAAGTGTTTAGAGGTGTCGTGAGATTGAGACGAGGTCTAAT 959
|||||||||||||||||| |||| |||||||| ||||||||| ||||||||||||||||
Sbjct 900 ATTATGCTATAACAATGTAAAAGTATTTAGAGGCGTCGTGAGACTGAGACGAGGTCTAAT 959
Query 960 AGCTAAAGTCATTGATCGCACAAAGACAATGGATGATGTCTACGGTGCGTTCTATGATTT 1019
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 960 AGCTAAAGTAATTGATCGCACAAAGACAATGGATGATGTCTATGGTGCGTTCTATGATTT 1019
Query 1020 TTCTTGCATGCTACAAACAAAGGTTGACAATAACGATCCAAATGCTATGAAAACATTAAA 1079
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1020 TTCTTGCATGCTACAAACAAAGGTTGACAAGAACGATCCAAATGCCATGAAAACATTAAA 1079
Query 1080 CCGACTCGAAACCATCAAGAAATTTTGCAAAGAAAATGGAGGACTTCACAAAAGAAAATC 1139
|||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 1080 CCGACTCGAAACCATCAAGAAAGTTTGCAGAGAAAATGGAGTCCTTCACAAAAGAAAATC 1139
Query 1140 TTATGTTAACGATGAAACACAATCCAAGGCTATCTTTGTTGTAATGTTTGTGCTTCTACT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTATGTTAACGATGAAACACAATCCAAGGCTATCTTTGTTGTAATGTTTGTGCTTCTACT 1199
Query 1200 GGCCATAGTCGTTGTATAT----CTCAAAGCAAACCAATGTAAGTGACTCTGATTTTGTG 1255
||||||||||||||||||| ||| ||||||||||| |||| ||||||||||| ||||
Sbjct 1200 GGCCATAGTCGTTGTATATATATCTCGAAGCAAACCAACGTAAATGACTCTGATTGTGTG 1259
Query 1256 AAGTCATCATGAACATAATTTCTAGCTTTTTTG 1288
|||||||||| ||||||||||||||||| ||||
Sbjct 1260 AAGTCATCATAAACATAATTTCTAGCTTCTTTG 1292
> Ahg944434 jgi|Araly1|944434|scaffold_700663.1
Length=1284
Score = 1160 bits (628), Expect = 0.0
Identities = 1048/1248 (84%), Gaps = 40/1248 (3%)
Strand=Plus/Plus
Query 1 ATGGGAAGCTTGAGTACGATTTTGAGACATCCGGATGAGT-TATATCCGCTCTTGAAGTT 59
||||| |||||| | ||||| ||||| |||||||||| | ||||||||||| ||||| |
Sbjct 26 ATGGGGAGCTTGGGGACGATGCTGAGATATCCGGATGA-TATATATCCGCTCCTGAAGAT 84
Query 60 GAAACTTGCGATT-ACGAAAGCTCAGAAGCAGATTCCACTTGAGCCACACTTAGCTTTCT 118
||||| |||||| | |||||| |||||||||| || | ||||||||||| | ||| |
Sbjct 85 GAAACGAGCGATTGA-GAAAGCGGAGAAGCAGATCCCCCCTGAGCCACACTGGGGTTTTT 143
Query 119 GTTATTCAATTCTTCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCA 178
| ||||| || || ||||| |||||| |||||||||||| |||||||| ||||| ||
Sbjct 144 GCTATTCGATGCTCCACAAGGTTTCTCGAAGCTTTTCTCTCGTTATTCAGCAACTCAACA 203
Query 179 CCGAGCTTCGTAACGCCGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTG 238
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 204 CCGAGCTTCGTAACGCCGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG 263
Query 239 AGGATGACACAAGCGTACCAG-TGGA-GATCAAAG-TTCCAATTCTGATAGCTTTCCACC 295
||||||| |||||| ||||| || | || |||| |||| || ||||||||||||||||
Sbjct 264 AGGATGATACAAGCATACCAACTG-ATGA--AAAGGTTCCCATCCTGATAGCTTTCCACC 320
Query 296 GTCA-TATATACGATGGTGACTGGCATTTTTCATGTGGTACAAAAGAGTATAAACTTCTA 354
| || | ||||| | ||||||||||| |||||||||||| || ||||| || |||||
Sbjct 321 GGCACT-TATACAACACTGACTGGCATTATTCATGTGGTACGAACGAGTACAAGGTTCTA 379
Query 355 ATGGACCAATTTCACCATGTTTCTGCAGC-TTTTCTGAAACTTGAAAAAGGGTATCAAGA 413
||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 380 ATGGACCAATTTCACCATGTTTCTGCAGCCTTTT-TGGAACTTGAAAAAGGGTATCAAGA 438
Query 414 GGCTATTGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGA 473
|||||| || || || |||| ||||||||||||||| ||||||||||| || ||| ||||
Sbjct 439 GGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGCCAAGTTTATCTGCCAGGA 498
Query 474 GGTAGAAACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTTGGTTT 533
||||||||| |||||||||| |||||||||||||| |||| ||| || ||||| |||||
Sbjct 499 GGTAGAAACTGTTGATGACTACGATGAATACTGCCACTATGTTGCTGGGCTTGTGGGTTT 558
Query 534 AGGTTTGTCAAAAATCTTCATTGCTTC-GGAATTAGAAATACTGACTCCAGATTGGAAG- 591
||||||||| ||| ||||| | || | ||| | ||| | |||| ||| ||||| ||
Sbjct 559 AGGTTTGTCGAAACTCTTCCTCGCAGCTGGA-TCAGAGGTTTTGACACCAAATTGGGAGG 617
Query 592 CAGATTTCAAATTCTACAGGTTTATTTCTGCAGAAAACAAACATTATCAAAGATTATCTT 651
| |||||| ||||| | ||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 618 C-GATTTCCAATTCAATGGGTTTATTTCTACAGAAAACAAACATTATCAGAGATTACCTT 676
Query 652 GAAGACATTAATGAGAGACCAAAGTCGCGCATGTTTTGGCCTCGTGAGATTTGGGGAAAA 711
|| ||||||||||||| |||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 677 GAGGACATTAATGAGATACCAAAATCCCGCATGTTTTGGCCTCGCGAGATTTGGGGCAAA 736
Query 712 TATGTTGACAAACTTGAGGACTTCAAAA-ATGAGGAGAAAGCTACAAAAGCAGTGCAGTG 770
|||| |||||| |||||||| || |||| | |||||||| | || ||| | || |||||
Sbjct 737 TATGCTGACAAGCTTGAGGATTT-AAAATACGAGGAGAACTCAACCAAATCCGTACAGTG 795
Query 771 TTTGAATGAAATGGTCACTAATGCATTGAAT-CATGTTGAAGATTGTTTGAAATCCTTGG 829
|||||||||||||| || ||||| |||| | ||| |||||||||| |||||| | |||
Sbjct 796 CTTGAATGAAATGGTTACCAATGCGTTGA-TGCATATTGAAGATTGCCTGAAATACATGG 854
Query 830 CTTCACTGCGTGATCCTGCAATATTTCAGT-CTTGCGCCATCCCTCAGATCGTGGCGATT 888
|| | ||||||||||| | ||||||| || || ||||||||||||||||| ||||||||
Sbjct 855 CTGCGTTGCGTGATCCTTCCATATTTCGGTTCT-GCGCCATCCCTCAGATCATGGCGATT 913
Query 889 GGAACACTTGCGTTATGCTATAACAATGTACAAGTGTTTAGAGGTGTCGTGAGATTGAGA 948
||||||||||| ||||||||||||||||||||||| || ||||| || |||| | ||||
Sbjct 914 GGAACACTTGCATTATGCTATAACAATGTACAAGTATTCAGAGGCGTTGTGAAACTGAGG 973
Query 949 CGAGGTCTAA-TAGCTAAAGTCATTGATCGCACAAAGACAATGGATGATGTCTACGGTGC 1007
|||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 974 CGAGGTCTAACT-GCTAAAGTCATTGATCGCACAAAGACAATGGCTGATGTCTATGGTGC 1032
Query 1008 GTTCTATGATTTTTCTTGCATGCTACAA-ACAAAGGTTGACAATAACGATCCAAATGCTA 1066
|||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1033 GTTCTATGATTTCTCTTGCATGCTG-AAGACAAAGGTTGACAAGAACGATCCAAATGCTA 1091
Query 1067 TGAAA-ACATTAAACCGACTCGAAACCA-T-CAAGAAATTTTGCAAAGAAAATGGAGGAC 1123
| || ||| |||||||||||||| | | | || |||| | |||||||| | ||||| |
Sbjct 1092 -GTAAGACACTAAACCGACTCGAAGC-AGTTCA-GAAACTCTGCAAAGACACTGGAGTCC 1148
Query 1124 TTCACAAAAGAAAATCTTATGTTAACGATGAAAC-ACAATCCAAGGCTAT--CTTTGTTG 1180
| || || |||||||| |||||||| || ||| |||| |||| | || |||| |
Sbjct 1149 TCCATAACAGAAAATCATATGTTAATGAC-AAAGGACAA-CCAAA-CAATGTCTTTCTCA 1205
Query 1181 TAATGTTTGTGCTTCTACTGGCCATAGTCGTTGTATATCTCAAAGCAA 1228
||||| ||||| |||||||||| |||||| ||| |||||||| |||||
Sbjct 1206 TAATGGTTGTGATTCTACTGGCGATAGTCTTTGCATATCTCAGAGCAA 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54164328390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5