BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34660.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491189 jgi|Araly1|491189|fgenesh2_kg.7__622__AT4G34660.1 2451 0.0
> Ahg491189 jgi|Araly1|491189|fgenesh2_kg.7__622__AT4G34660.1
Length=1616
Score = 2451 bits (1327), Expect = 0.0
Identities = 1554/1656 (94%), Gaps = 46/1656 (3%)
Strand=Plus/Plus
Query 8 AAATTTGTTCTGAGCTCAACGCCATTTTTGACGATTTCGAATCTCTGTCTTCTCTGAGTT 67
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1 AAATTTGTGCTGAGCTCAACGCCATTTTTGACGATTTCGAATCTCTTTCTTCTCTGAATT 60
Query 68 GTTCCAAGTAATCGGAGGGAACTCGTAAAGTGGAAGAATAGGAGAAAGAGAGAAGGAAGA 127
||||||||||| |||||| ||||||| | ||| | | ||| |||||
Sbjct 61 GTTCCAAGTAACCGGAGGTAACTCGT--A----AAG--T----------G-GAA-GAAGA 100
Query 128 AGATTTGTGAATAGCTCTTGATCTGGTGAAGAATGGATGCAATTAGAAAACAAGCTAGCA 187
||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 101 AGATTTGCGAAGAGCTCTTGATCTGGTGAACAATGGATGCAATTAGAAAACAAGCTAGCA 160
Query 188 GGTTGAGAGAACAAGTTGCGAGACAGCAGCAGGCTGTCTTTAAGCAATTTGGAGGAGGGG 247
|||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |
Sbjct 161 GGTTGAGAGAACAAGTTGCGAGACAGCAACAGGCTGTGTTCAAGCAATTTGGAGGAGGAG 220
Query 248 GATATGGCTCTGGTTTAGCTGATGAAGCAGAACTCAATCAGCATCAGAAGCTAGAAAAGC 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GATATGGCTCTGGTTTAGCTGATGAAGCAGAACTCAATCAGCATCAGAAGCTAGAAAAGC 280
Query 308 TTTACATATCCACTCGTGCTGCTAAGCATTACCAAAGAGATATTGTTCGTGGTGTGGAAG 367
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 281 TTTACATATCCACTCGTGCTGCCAAGCATTACCAAAGAGATATTGTTCGTGGTGTGGAAG 340
Query 368 GTTATATAGTTACAGGGTCAAAACAAGTTGAAATAGGTACGAAATTGTCTGAGGATAGCA 427
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 341 GTTATATAGTCACTGGGTCAAAACAAGTTGAAATAGGGACGAAATTGTCTGAGGATAGCA 400
Query 428 GGAAATATGGTTCAGAGAATACATGTACGAATGGTAACGTATTAACACGGGCTGCACTGA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GGAAATATGGTTCAGAGAATACATGTACGAATGGTAACGTATTAACACGGGCTGCACTGA 460
Query 488 ACTATGGGCGTGCTCGAGCACAAATGGAGAAGGAACGTGGAAATATGTTGAAGGCTCTTG 547
|||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 461 ACTATGGGCGAGCTCGCGCACAAATGGAGAAGGAGCGTGGAAATATGTTGAAGGCTCTCG 520
Query 548 GTACACAGGTTGCTGAGCCATTACGGGCAATGGTTTTGGGAGCTCCATTGGAGGATGCTA 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GTACACAGGTTGCTGAGCCATTACGGGCAATGGTTTTGGGAGCTCCATTGGAGGATGCTA 580
Query 608 GACATCTTGCTCAACGCTATGACAGAATGCGCCAAGAAGCTGAAGCTCAGGCTACAGAAG 667
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 581 GACATCTAGCTCAACGCTATGACAGAATGCGCCAAGAAGCCGAAGCTCAGGCTACAGAAG 640
Query 668 TTGCCAGACGCCAAGCAAAGGCGAGAGAGTCTCAAGGTAATCCTGACATCTTGATGAAAC 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TTGCCAGACGCCAAGCAAAGGCGAGAGAGTCTCAAGGTAATCCTGACATCTTGATGAAAC 700
Query 728 TGGAATCTGCTGAAGCAAAACTTCACGACCTAAAATCAAATATGACAATATTGGGGAAAG 787
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 701 TGGAATCTGCTGAAGCAAAACTTCAAGACCTAAAATCAAATATGACAATATTGGGGAAAG 760
Query 788 AAGCTGCTTCTGCTTTAGCTTCCGTTGAAGATCAACAACAGAAATTGACTCTTGAACGAC 847
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 761 AAGCTGCTTCAGCTTTAGCTTCCGTTGAAGATCAACAACAAAAATTGACTCTTGAACGAC 820
Query 848 TTCTTTCAATGGTTGAATCTGAACGCGCCTACCATCAAAGAGTCCTCCAAATACTTGATC 907
|||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 821 TTCTCTCAATGGTTGAATCTGAGCGTGCTTACCATCAAAGAGTCCTCCAAATACTTGATC 880
Query 908 AGCTCGAAGGAGAGATGGTATCTGAGAGGCAACGTATAGAAGCTCCCTCTACTCCCTCAA 967
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 881 AGCTCGAAGGAGAGATGGTGTCTGAGAGGCAACGTATAGAAGCTCCCTCTACTCCCTCAA 940
Query 968 GCGCAGACAGTATGCCGCCACCTCCATCATATGAGGAAGCTAATGGAGTGTTTGCATCTC 1027
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 GCGCAGACAGTATGCCACCACCTCCATCATATGAGGAAGCTAATGGAGTGTTTGCATCTC 1000
Query 1028 AGATGCATGACACGTCAACAGATAGCATGGGTTACTTCTTAGGAGAGGTCTTGTTCCCAT 1087
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1001 AGATGCATGACACGTCAACAGATAGCATGGGTTACTTCTTAGGAGAGGTTTTGTTCCCAT 1060
Query 1088 ATCACGGTGTGACAGATGTCGAGCTCAGCTTATCAACTGGTGAATACGTTGTTGTTAGAA 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 ATCACGGTGTGACAGATGTCGAGCTCAGCTTATCAACTGGTGAATACGTTGTTGTTAGAA 1120
Query 1148 AGGTTACAGGCAGTGGATGGGCCGAAGGTGAATGCAAAGGCAAAGCTGGTTGGTTCCCTT 1207
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 AGGTTATAGGCAGTGGATGGGCCGAAGGTGAATGCAAAGGCAAAGCTGGTTGGTTCCCTT 1180
Query 1208 ATGGGTACATTGAAAGACGGGAACGAGTTCTTGCTAGCAAAGTGTCCGAAGTTTTCTGAG 1267
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 ATGATTACATTGAAAGACGGGAACGAGTTCTTGCTAGCAAAGTGTCCGAAGTTTTCTGAG 1240
Query 1268 AATTTGAAGGTAACATTATGGTTCTTTGTTGGTTATGGAATTGAGTTGCTTCTGTAGAAG 1327
|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1241 AATTCGAAGGTAACATC--G-TTCTTTGTTGGTTATGGAATTGAGTTGCTTCTGTAGAAG 1297
Query 1328 AGTTGTGTGT-T-CTGTagaa-gaaaaagaaagaaaagaTTCACGGGCTAAAACAGAAGT 1384
|||||||||| | |||||||| |||||||||||| ||||||||| |||||| |||||||
Sbjct 1298 AGTTGTGTGTGTTCTGTAGAAAGAAAAAGAAAGAGAAGATTCACCAGCTAAAGCAGAAGT 1357
Query 1385 CCATATGCATGAGGATCAGAGTTGATGCGGGTTTCTGCCATGTTCTGAATCTAATAGTGA 1444
|||||| |||||||||||||||||||| |||||||||| ||||||||||| || ||||||
Sbjct 1358 CCATATACATGAGGATCAGAGTTGATGTGGGTTTCTGCGATGTTCTGAATTTAGTAGTGA 1417
Query 1445 TGCCACTTGAACAAGAGTTCAGTTTTTAGGTATTATCTTCA-TATTGGATTTGGATATTT 1503
| |||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||
Sbjct 1418 TACCACTTGAACAAGAGTTCAGTTTTTAGGTATTATCT-CAATATTTGATTTGGATCTTC 1476
Query 1504 TCTTTGTCATTTGATGTAAACGCCACATCTCTGTTTATCTTCGTATGTGAATACACTTCT 1563
|||||| |||||||||||| ||||| |||||||||||||||| ||||||||| |||||||
Sbjct 1477 TCTTTGGCATTTGATGTAATCGCCAAATCTCTGTTTATCTTCATATGTGAATTCACTTCT 1536
Query 1564 TTTCGGGTCTTATTTGTGATTTTTTGTCCAAAT-TACTTTCATTTGATAACCTTGAAACT 1622
||| | || ||||| |||| | ||||||||||||||||||||||||||
Sbjct 1537 TTT----T-TT-TTTGT----------CCAA-TCTACTTTCATTTGATAACCTTGAAACT 1579
Query 1623 TGATGAAGAAGTGATTATTTTTCAAATTTACGCAAA 1658
||||||||||||||||||||||||| ||||||||||
Sbjct 1580 TGATGAAGAAGTGATTATTTTTCAAGTTTACGCAAA 1615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5