BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34670.1
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491188 jgi|Araly1|491188|fgenesh2_kg.7__621__AT4G34670.1 1657 0.0
Ahg477755 jgi|Araly1|477755|fgenesh2_kg.3__456__AT3G04840.1 833 0.0
> Ahg491188 jgi|Araly1|491188|fgenesh2_kg.7__621__AT4G34670.1
Length=1036
Score = 1657 bits (897), Expect = 0.0
Identities = 995/1040 (96%), Gaps = 15/1040 (1%)
Strand=Plus/Plus
Query 1 AAATGAAAAGCCAGTGAATTAGGGCTTTCTCTCACTTGTTGAAGCCG---CTTCTTCTTC 57
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1 AAATGAAAAGCCAGTGAATTAGGGCTTTCTCTCAATTGTTGAAGCCGCTTCTTCTTCTTC 60
Query 58 TTCCTCACTGTAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG 117
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 TTCCTCACTGTAGCTCGTCGTCGCTACACCATCT-GAAGACCCTTAACCATGGCTGTCGG 119
Query 118 GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGCTGTTGATCCCTT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGCTGTTGATCCTTT 179
Query 178 CTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGGTTCTTTCACGAACAGGAATGTTGG 237
||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 180 CTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGCTTCATTCACCCACAGGAATGTTGG 239
Query 238 GAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGATTGCCTCTGAGGGACTGAAACACAG 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGATTGCCTCTGAGGGACTGAAACACAG 299
Query 298 GGTGTTTGAGGTTTCTCTTGCTGATCTACAAAATGATGAGGATAATGCCTACAGGAAGAT 357
||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 300 GGTTTTTGAGGTTTCTCTTGCTGATTTACAAAAAGATGAGGATAATGCCTACAGGAAGAT 359
Query 358 CCGTCTTAGAGCTGAAGATGTTCAGGGAAGGAATGTGTTGACCCAGTTCTGGGGTATGGA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCGTCTTAGAGCTGAAGATGTTCAGGGAAGGAATGTGTTGACCCAGTTCTGGGGTATGGA 419
Query 418 TTTCACAACCGACAAGCTAAGGTCATTGGTGAAGAAGTGGCAGACTTTGATTGAAGCCCA 477
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 420 TTTCACAACCGACAAGCTAAGGTCTTTGGTCAAGAAGTGGCAGACTTTGATTGAAGCCCA 479
Query 478 TGTCGATGTGAAAACCACAGACGGCTACACCTTGAGGATGTTCTGCATCGCCTTCACAAA 537
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 TGTCGATGTGAAAACCACTGACGGCTACACCTTGAGGCTGTTCTGCATCGCCTTCACAAA 539
Query 538 GAGACGTGCTAACCAAGTGAAGCGTACCTGTTACGCTCAATCCAGCCAAATCCGTCAGAT 597
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 540 GAGACGTGCTAACCAAGTGAAGCGTACTTGTTATGCTCAATCCAGCCAAATCCGTCAGAT 599
Query 598 CCGCAGAAAGATGAGTGAGATTATGGTGAAGGAGGCTTCATCTTGTGACCTCAAGGAGCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCGCAGAAAGATGAGTGAGATTATGGTGAAGGAGGCTTCATCTTGTGACCTCAAGGAGCT 659
Query 658 AGTGGCCAAGTTCATCCCAGAGGCCATTGGAAGAGAGATTGAGAAGGCAACACAGGGCAT 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGTGGCCAAGTTCATCCCAGAGGCCATTGGAAGAGAGATTGAGAAGGCAACACAGGGCAT 719
Query 718 CTACCCGTTGCAGAATGTGTTCATCCGTAAAGTGAAGATCCTAAAGGCTCCCAAGTTTGA 777
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTACCCGTTGCAAAATGTGTTCATCCGTAAAGTGAAGATCCTAAAGGCTCCCAAGTTTGA 779
Query 778 CCTTGGAAAGCTCATGGAGGTGCATGGAGATTACACAGCAGAGGATGTTGGTGTGAAGGT 837
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 CCTTGGAAAGCTCATGGAGGTGCATGGAGATTACACAGCCGAGGATGTTGGTGTGAAGGT 839
Query 838 AGACAGGCCAGCTGATGAGACAATGGTTGAGGAGCCAACAGAAATCATCGGAGCTTAGGG 897
|||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |
Sbjct 840 AGACAGGCCAGCTGATGAAACAATGGCTGAGGAACCAACAGAAATCATCGGAGCTTAGAG 899
Query 898 GATTATAGATTTGTTTGTTTTTTCGCTGGCaaaaaaaaaaaaGAACCTAATGTTATGTCG 957
| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 900 AAATATAGATTTGTTTGTTTTT-CGCTGGCAAAAAAAAAA--GAACCTAATGTTATGTCG 956
Query 958 CCATTGGTGTGACTGGTTTTGGACTCGTTTTTGATGGATG---AT--CT-T-T-ATTGtt 1009
|| || ||||||||||||||||| ||||||||||||||| || || | | ||||||
Sbjct 957 CCTTTTGTGTGACTGGTTTTGGATTCGTTTTTGATGGATATCTATAACTCTCTTATTGTT 1016
Query 1010 tatcatgttttacctttttt 1029
|||||||| |||||||||||
Sbjct 1017 TATCATGTGTTACCTTTTTT 1036
> Ahg477755 jgi|Araly1|477755|fgenesh2_kg.3__456__AT3G04840.1
Length=1015
Score = 833 bits (451), Expect = 0.0
Identities = 681/794 (86%), Gaps = 8/794 (1%)
Strand=Plus/Plus
Query 105 CCATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGG 164
||||||| |||||||| |||||||| || || ||||||||||| ||||||||||||||||
Sbjct 72 CCATGGCCGTCGGGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGG 131
Query 165 CTGTTGATCCCTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCC-TGGTTCTTTCA-C 222
|||||||||| |||||||||||||| |||||||| || |||||||| | | |||| |
Sbjct 132 CTGTTGATCCTTTCTCCAAGAAGGACTGGTATGATGTCAAGGCTCCTTCAAAC-TTCACC 190
Query 223 GAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGATTGCCTCTGA 282
||| |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 191 AAAC-GGAATGTTGGAAAGACACTTGTTTCCAGGACTCAGGGTACCAAAATTGCCTCTGA 249
Query 283 GGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGATCTACAAAATGATGAGGATAA 342
|| |||||||||| || |||||||| ||||| |||||||| ||| ||| || |||||
Sbjct 250 AGGTTTGAAACACAGAGTTTTTGAGGTCTCTCTAGCTGATCTTCAAGTTGACGAAGATAA 309
Query 343 TGCCTACAGGAAGATCCGTCTTAGAGCTGAAGATGTTCAGGGAAGGAATGTGTTGACCCA 402
||| ||||||||||||||||| |||||||||||||| ||||| ||||| || ||| |||
Sbjct 310 TGCTTACAGGAAGATCCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAACGTTTTGTGCCA 369
Query 403 GTTCTGGGGTATGGATTTCACAACCGACAAGCTAAGGTCATTGGTGAAGAAGTGGCAGAC 462
|||||||| ||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 370 ATTCTGGGGCATGGACTTCACAACCGACAAGCTTAGGTCATTGGTTAAAAAGTGGCAGAC 429
Query 463 TTTGATTGAAGCCCATGTCGATGTGAAAACCACAGACGGCTACACCT-TGAGGATGTTCT 521
||||||||| || ||||| ||||| |||||||| ||| ||||| || ||||| | ||||
Sbjct 430 TTTGATTGAGGCTCATGTTGATGTCAAAACCACTGACAACTACA-CTCTGAGGCTATTCT 488
Query 522 GCATCGCCTTCACAAAGAGACGTGCTAACCAAGTGAAGCGTACCTGTTACGCTCAATCCA 581
||||||||||||| ||||||||||||||||| || ||| | || || |||||||||||||
Sbjct 489 GCATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCA 548
Query 582 GCCAAATCCGTCAGATCCGCAGAAAGATGAGTGAGATTATGGTGAAGGAGGCTTCATCTT 641
|||||||||||||||||||||| |||||||| ||||| ||| | ||||| ||||| || |
Sbjct 549 GCCAAATCCGTCAGATCCGCAGGAAGATGAGGGAGATCATGATTAAGGAAGCTTCCTCAT 608
Query 642 GTGACCTCAAGGAGCTAGTGGCCAAGTTCATCCCAGAGGCCATTGGAAGAGAGATTGAGA 701
||||||| ||||| || || || |||||||| || || || ||||| || ||||||||||
Sbjct 609 GTGACCTGAAGGATCTTGTTGCTAAGTTCATTCCTGAAGCTATTGGCAGGGAGATTGAGA 668
Query 702 AGGCAACACAGGGCATCTACCCG-TTGCAGAATGTGTTCATCCGTAAAGTGAAGATCCTA 760
||||||| |||||||||||||| || |||||||| |||||||| ||||| ||||||||
Sbjct 669 AGGCAACTCAGGGCATCTACCCTCTT-CAGAATGTTTTCATCCGCAAAGTCAAGATCCTC 727
Query 761 AAGGCTCCCAAGTTTGACCTTGGAAAGCTCATGGAGGTGCATGGAGATTACACAGCAGAG 820
||||| ||||| || |||||||| ||||||||||| || || |||||||| |||||||
Sbjct 728 AAGGCACCCAAATTCGACCTTGGCAAGCTCATGGATGTTCACGGAGATTATTCAGCAGAA 787
Query 821 GATGTTGGTGTGAAGGTAGACAGGCCAGCTGATGAGACAATGGTTGAGGAGCCAACAGAA 880
||||||||||| |||||||| |||||||||||||||| |||||||| || || |||
Sbjct 788 GATGTTGGTGTTAAGGTAGAGAGGCCAGCTGATGAGATGGCCGTTGAGGAACCTACTGAA 847
Query 881 ATCATCGGAGCTTA 894
||||||||||||||
Sbjct 848 ATCATCGGAGCTTA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41973331617
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5