BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34680.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491187 jgi|Araly1|491187|fgenesh2_kg.7__620__AT4G34680.2 1544 0.0
> Ahg491187 jgi|Araly1|491187|fgenesh2_kg.7__620__AT4G34680.2
Length=1206
Score = 1544 bits (836), Expect = 0.0
Identities = 907/940 (96%), Gaps = 10/940 (1%)
Strand=Plus/Plus
Query 71 AGAGTGAATGGAGCTGTGGACAGAAGCTAGAGCCTTAAAGGCAAGTCTAAGAGGAGAATC 130
||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 274 AGAGTTAATGGAGCTGTGGACAGAAGCTAAAGCCCTAAAGGCAAGTCTAAGAGGAGAATC 333
Query 131 TACTATATCTCTCAAACATCACCAAGTGATTGTGTCGGAAGATTTAAGCCGAACTTCTTC 190
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 334 TACTACATCTCTCAAACATCACCAACTGATTGTGTCGGAAGATTTAAGCCGAACTTCTTC 393
Query 191 CTTG-CCGGAAGATTTCTCCGTTGAGTGTTTCCTCGATTTCTCAGAAGGTCAAAaagaag 249
||| || |||||||| || ||||||||||||||||||||||||||||||| ||| |||
Sbjct 394 TTTGTCC-GAAGATTTTTCTGTTGAGTGTTTCCTCGATTTCTCAGAAGGTC--AAA-AAG 449
Query 250 aagaagaagaagTTGTCTCTGTTTCTTCTTCACAAG-AGCAAGAAGAACAAGAACATGAT 308
||||||||||| |||||||||||||||||||||||| || || ||||||||||||| |||
Sbjct 450 AAGAAGAAGAACTTGTCTCTGTTTCTTCTTCACAAGAAG-AACAAGAACAAGAACAAGAT 508
Query 309 TGTGTCTTTAGTTCACAACCTTGCATCTTTGATCAACTTCCTTCTTTGCCGGATGAAGAT 368
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TGTATCTTTAGTTCACAACCTTGCATCTTTGATCAACTTCCTTCTTTGCCGGATGAAGAT 568
Query 369 GTGGAAGAGCTTGAATGGGTATCTCGTGTTGTGGATGATTGTTCATCACCAGAAGTTTCA 428
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 569 GTGGAAGAGCTTGAATGGGTATCTCGTGTTGTGGATGATTGTTCATCACCAGAAGTCTCA 628
Query 429 CTTCTCTTAACACAAACACATAAAACCAAACCAAGCTTCTCAAGAATTCCGGTTAAACCA 488
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 629 CTTCTCTTAACACAAACCCACAAAACCAAACCAAGCTTCTCAAGAATTCCGGTTAAACCA 688
Query 489 AGAACCAAACGGTCTCGGAACAGTTTAACCGGTAGTCGTGTTTGGCCACTCGTTTCAACC 548
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 689 AGAACCAAACGGTCTCGTAACAGTTTAACCGGTGGTCGTGTTTGGCCACTCGTTTCAACC 748
Query 549 AATCATCAACATGCAGCAACAGAGCAGTTGAGGAAGAAGAAACAAGAAACTGTCC-TTGT 607
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 749 AATCATCAACATGCAGCAACAGAGCAGTTGAGGAAGAAGAAACAAGAAAC-GGCCGTTGT 807
Query 608 GTTTCAACGAAGATGCAGCCATTGTGGCACAAACAACACACCACAGTGGAGAACCGGTCC 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GTTTCAACGAAGATGCAGCCATTGTGGCACAAACAACACACCACAGTGGAGAACCGGTCC 867
Query 668 GGTCGGTCCAAAAACCTTATGTAATGCATGTGGAGTCCGGTTTAAGTCTGGTAGGCTCTG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GGTCGGTCCAAAAACCTTATGTAATGCATGTGGAGTCCGGTTTAAGTCTGGTAGGCTCTG 927
Query 728 CCCGGAATACAGACCGGCGGATAGTCCGACGTTCTCGAATGAGATTCACTCAAATCTTCA 787
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 928 CCCGGAATACAGACCGGCGGATAGTCCGACGTTCTCTAATGAGATTCACTCGAATCTACA 987
Query 788 TAGGAAGGTTCTGGAATTAAGAAAGAGTAAAGAGTTGGGTGAAGAAACAGGTGAAGCTAG 847
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 988 TAGGAAGGTTCTGGAATTGAGAAAGAGTAAAGAGTTGGGTGAAGAAACAGGTGAAGCTAG 1047
Query 848 TACTAAATCAGACCCAGTCAAATTTGGCAGCAAGTGGTAGATAAGACTTAGGTAAAACCT 907
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TACTAAATCAGACCAAGTCAAATTTGGCAGCAAGTGGTAGATAAGACTTAGGTAAAACCT 1107
Query 908 ACTTTTTGTAACATTATCTGTAGTGTTGTAATTTAACAACTTGCTTCTTAACATTTTGAA 967
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1108 ACTTTTTGTAACATTATCTGTAGTGTTGTAATTTAACAACTTGCTTCTTAACATTT-GAA 1166
Query 968 ACTGTTTCAGGAACTAGTCTTAAGTAAACAATGGTTTTCT 1007
||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 ACTGTTTCAGGAACTAGTCTTAAGTAAACAATGGTTTTCT 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5