BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G34700.1

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944429 jgi|Araly1|944429|scaffold_700658.1                        628    1e-179


> Ahg944429 jgi|Araly1|944429|scaffold_700658.1
Length=394

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 378/395 (96%), Gaps = 7/395 (2%)
 Strand=Plus/Plus

Query  34   AATCAGGAAGA-CA-AAAATGAGCGGAGTTTCGACGGCGGCGTACTTTGCGCGGCGAGCG  91
            |||| |||| | || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  5    AATC-GGAA-ATCAGAAAATGAGCGGAGTTTCGACGGCGGCGTATTTTGCGCGGCGAGCG  62

Query  92   GCTCAGAAGGAGAGAGTTCGAATCCTTTACCGTCGTGCCCTTAAGGATACTCTCAATTGG  151
            || ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct  63   GCGCAGAAGGAGAGGGTTCGAATCCTTTATCGCCGTGCCCTTAAGGATACTCTCAATTGG  122

Query  152  GCTGTTCATCGCCATATCTTCTACCGTGACGCTTCTGATCTGCGTGAGAAGTTCAATGTC  211
            |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct  123  GCTGTTCATCGCCATATCTTCTACCGCGACGCTTCTGATCTTCGTGAGAAGTTCAATGCC  182

Query  212  AACCAAGATGTGGAGGATGTCGACAGAATCGACAAACTGATTGCTCATGGTGAAGCAGAA  271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  AACCAAGATGTGGAGGATGTCGACAGAATCGACAAACTGATTGCTCATGGTGAAGCAGAA  242

Query  272  TACAACAAATGGCGGCACCCTGATCCTTATATCGTTCCATGGGCTCCTGGTGGCTCAAAG  331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  TACAACAAATGGCGGCACCCTGATCCTTATATCGTTCCATGGGCTCCTGGTGGCTCAAAG  302

Query  332  TTCTGTAGAAACCCGACTCCGCCTGCTGGGATTGAGATTGTGTACAACTATGGTCTAGAA  391
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  303  TTCTGTAGAAACCCGACTCCGCCTGCTGGGATTGAGATTGTGTATAACTATGGTCTAGAA  362

Query  392  GACAACCCATAATAAACCTAGCTTCCATATTGTCA  426
            |||||||||||| |  ||||||||||||||| |||
Sbjct  363  GACAACCCATAA-A--CCTAGCTTCCATATTTTCA  394



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27486623157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5