BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34750.1
Length=971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491180 jgi|Araly1|491180|fgenesh2_kg.7__613__AT4G34750.1 1092 0.0
> Ahg491180 jgi|Araly1|491180|fgenesh2_kg.7__613__AT4G34750.1
Length=841
Score = 1092 bits (591), Expect = 0.0
Identities = 799/889 (90%), Gaps = 56/889 (6%)
Strand=Plus/Plus
Query 1 CTCTCCAACTTTCCCTTCATTTTCTGGGGAAAAGCGAGCCAAAAAACGCA-AAAGCAATC 59
||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||
Sbjct 1 CTCTCCAACTTTCCCTTCATTTTCTGGGGAATAGCGAGCC-AAAAACGCAGAAAGC-ATC 58
Query 60 CACAAGAAGCAATTGTTCGATATCAATGGGGAAGAACAATAAGATCGGAAGCGTTGTTCG 119
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CACAAGAAGCAATTGGTCGATATCAATGGGGAAGAACAATAAGATCGGAAGCGTTGTTCG 118
Query 120 GATCCGTCAGATGCTTAAACAATGGCAGAAAAAAGCTCACATCGGATCTAGCAACAACGA 179
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 119 GATCCGTCAGATGCTTAAACAATGGCAGAAAAAAGCTCACATCGGATCCAACAACAACGA 178
Query 180 TCCTGTTTCCGATGTACCTCCTGGTCACGTTGCTGTTTCCGTCGGTGAGAATCGTCGGAG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 179 TCCTGTTTCCGATGTACCTCCTGGTCACGTTGCTGTTTCCGTCGGTGAGAATCGTCAGAG 238
Query 240 ATACGTTGTCCGTGCTAAGCATTTGAACCATCCGAT-TTTCCGACGGCTTCTAGCTGAGG 298
||||||||||||||| ||||||||||| |||||||| |||| | |||||||| || ||||
Sbjct 239 ATACGTTGTCCGTGCGAAGCATTTGAATCATCCGATCTTTC-GTCGGCTTCTCGCGGAGG 297
Query 299 CTGAGGAAGAGTATGGATTCGCTAACGTTGGTCCGTTAGCGATTCCTTGTGATGAATCGT 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTGAGGAAGAGTACGGATTCGCTAACGTTGGTCCGTTAGCGATTCCTTGTGATGAATCGT 357
Query 359 TGTTTGAGGATATTATTGCGATTGTGACTCGGTGTGAGTCGTCATCATCATCTGGACGAG 418
||||||||||||||||||||||||||| |||| ||||||||||||| | || ||||
Sbjct 358 TGTTTGAGGATATTATTGCGATTGTGAGTCGGAGTGAGTCGTCATC-TG----GG-CGAG 411
Query 419 GTAATCCTCCGGCGGCGACGCTTGAGGATCTCCGGAGGTGTAGTCATGTTGGATTGGCGA 478
||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 412 GTAATCC---GGAGGCGACGCTTGAGGATCTCCGGAGGTGTAGTCACGTCGGATTGGCGA 468
Query 479 AGAACAACGTTGAATCTCGTCCGTTACTTCCTGGGATTGCTGAAAAATCTGTGTGCTAAT 538
||| ||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||||
Sbjct 469 AGAGCAACGTTGAATCTCGGCCGTTGCTTCCTGGGATTACTGAAAAATCTGTCTGCTAAA 528
Query 539 GAAATTTGCAAACGGAATGTG-ATTGAAACTTTGGTTAGAGatttaattttgaaagtttt 597
||||||||||||||||| || |||||| |||||||||||||||| |||||||||||||
Sbjct 529 CAAATTTGCAAACGGAATTTGGATTGAAGCTTTGGTTAGAGATTTGCTTTTGAAAGTTTT 588
Query 598 a-atttaatttcgttgctattttttttaatgatttttgactttgtttttgGGAAGGAGAT 656
||||||||||||||||| ||||| | ||||| | | ||||| |||||||||||
Sbjct 589 TTATTTAATTTCGTTGCTAATTTTT--A-TGATTCT--A----GTTTT-GGGAAGGAGAT 638
Query 657 GGCAAAATTAGGGTTTGATATTGTTTTTGGTTGTCG-C-C-AGTGTCGTCGTCCCAGAAT 713
||||||||||||||||||| | |||||||||||||| | | ||||||||||||||||| |
Sbjct 639 GGCAAAATTAGGGTTTGAT-T-GTTTTTGGTTGTCGTCGCCAGTGTCGTCGTCCCAGA-T 695
Query 714 GATGAAGATTTGATGAAGGAGATAGtttttttGGAGAGAGGAGCCC-TCAGTTTTTAATT 772
||| | || | |||||||||||||| |||||| | ||||| |||||||||| ||
Sbjct 696 --TGA---T--GA--A-GGAGATAGTTTTTT-GGAGAG-G-AGCCCCTCAGTTTTTA-TT 741
Query 773 TAGATATTTTTGATTCTGGTCGAGAGATTCTTATTTATATTTCTCTTGGCTATTTTCAAT 832
||||||||| | | | | |||| ||||||||||||||||| |||||||||||||||
Sbjct 742 TAGATATTTG-G-T-CA--T-GAGA--TTCTTATTTATATTTCTTTTGGCTATTTTCAAT 793
Query 833 TTGTATATTCAGATTTCTGAATTTTAACTGAGGAATAATAAATTAATTT 881
| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 T-GTATATTCAGATTTCTGAATTTTAACTGAGGAATAATAAATTAATTT 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36064279482
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5