BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34760.1
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491179 jgi|Araly1|491179|fgenesh2_kg.7__612__AT4G34760.1 749 0.0
Ahg931483 jgi|Araly1|931483|scaffold_303940.1 335 3e-91
> Ahg491179 jgi|Araly1|491179|fgenesh2_kg.7__612__AT4G34760.1
Length=658
Score = 749 bits (405), Expect = 0.0
Identities = 451/471 (96%), Gaps = 12/471 (3%)
Strand=Plus/Plus
Query 2 CCACCCATCTCCTTCTCCATAA--ctctctctctctctcCCTAAACACAACC-AAAGACT 58
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||
Sbjct 1 CCACCCATCTCCTTCTCCATAACTCTCTCTCTCTCTCTCCCTAAACACAACCAAAAG-CT 59
Query 59 TTTATCTCTCAGGAACCCCAAAAACAAATGGCTATAATGAAGAAAACTTCAAAACTCACT 118
||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 TTTATCTCTCAAGAA-CCCAAAAACAAATGGCTATAATAAAGAAAACTTCAAAACTCACT 118
Query 119 CAAACAGCAATGCTGAAGCAGATTCTGAAGAGATGCTCGAGCTTAGGGAAGAAGAATGGA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CAAACAGCAATGCTGAAGCAGATTCTGAAGAGATGCTCGAGCTTAGGGAAGAAGAATGGA 178
Query 179 GGAGGGTACGATGAAGATTGCCTTCCGCTTGACGTACCAAAGGGACACTTCCCTGTCTAT 238
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 GGAGGGTACGATGAAGATTGCCTTCCACTTGACGTACCAAAGGGACACTTCCCTGTCTAT 238
Query 239 GTCGGAGAGAACAGAAGCAGATACATTGTCCCAATCTCCTTCTTGACACATCCTGAGTTC 298
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 239 GTCGGAGAGAACAGAAGCAGATACATTGTCCCAATCTCCTTCTTGACTCATCCTGAGTTT 298
Query 299 CAATCTCTCTTACAACGAGCCGAGGAAGAATTTGGATTCGATCACGACATGGGTCTCACC 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 CAATCTCTCTTACAACGAGCCGAGGAAGAATTTGGATTCGACCACGACATGGGTCTCACC 358
Query 359 ATTCCTTGTGATGAACTCGTTTTTCAAACCCTAACATCCATGATCCGATGATATTTTA-- 416
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 ATTCCTTGTGATGAACTCGTTTTTCAAACCCTAACTTCCATGATCCGATGATATTTTAAG 418
Query 417 T-----CATTTGAAGAAGAAGCAGAAGGAGATGGTTAAAGAAGAAGCGGAA 462
| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 419 TTAAATCATTTGAAGAAGAAGCAGAAGGAGATGGTTAAAGAAGAGGCGGAA 469
Score = 311 bits (168), Expect = 5e-84
Identities = 182/189 (96%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 508 ttttttcctttatttttaagcccatctagggttttttttACGAGTTAATTGACTCGTCTA 567
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 470 TTTTTTCCTTTATTTTTAAGCCCATCTAGGGTTTTTTTTACGAGGTAATTGTCTCGTCTA 529
Query 568 ACTAGAAATAAATCCGTATGAGATAGAGATTCTATGGGTTTAGATCTGTAAATAAAGTTT 627
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 530 ACTAGAAAAAAATCCGTATGAGATAGAGATTCTATGGGTTTAGATATGTAAATAAAGTTT 589
Query 628 GTAATGTTTTCCTCACAGATCTTCGTTCTGTGAGAGAAGTTATTTAATGCAAGAGAAAGT 687
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 590 GTAATGTTTTCCTCACAAATCTTAATTCTGTGAGAGAAGTTATTTAATGCAAGAGAAAGT 649
Query 688 ATTCCTCCG 696
|||||||||
Sbjct 650 ATTCCTCCG 658
> Ahg931483 jgi|Araly1|931483|scaffold_303940.1
Length=373
Score = 335 bits (181), Expect = 3e-91
Identities = 310/371 (84%), Gaps = 13/371 (4%)
Strand=Plus/Plus
Query 75 CCCAAAAAC--AAATGGCTATAATGAAGAAAACTTCAAAACTCACTCAAACAGCAATGCT 132
||||||||| ||||||| || | |||||| || ||||||| ||||||||||||||||
Sbjct 8 CCCAAAAACAAAAATGGCCATCCTTAAGAAATCTACAAAACTGGCTCAAACAGCAATGCT 67
Query 133 GAAGCAGATTCTGAAGAGATGCTCGAGCTTAGGGAAGAAGAATGGAGGAGGGTACGATGA 192
| |||||||||||||||||| || |||||||| ||||||||||||||||| ||||| ||
Sbjct 68 TAGGCAGATTCTGAAGAGATGTTCAAGCTTAGGTAAGAAGAATGGAGGAGGATACGAAGA 127
Query 193 AGATTG-CCTTCCGCTTGACGTACCAAAGGGACACTTCCCTGTCTATGTCGGAGAGAACA 251
||| || || || ||||| ||||||||||||||||||||||||||||| ||| | ||||
Sbjct 128 AGA-TGATCTCCCACTTGATGTACCAAAGGGACACTTCCCTGTCTATGTAGGACACAACA 186
Query 252 GAAGCAGATACATTGTCCCAATCTCCTTCTTG-ACACATCCTGAGTTCCAATCTCT-CTT 309
||||||||||||| || || ||||| |||||| || ||| ||| ||||||| ||| |||
Sbjct 187 GAAGCAGATACATAGTTCCTATCTCTTTCTTGTCCA-ATCTTGACTTCCAATGTCTCCTT 245
Query 310 ACAACGAGCCGAGGAAGAATTTGGATTCGATCACGACATGGGTCTCACCATTCCTTGTGA 369
| || |||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 246 AGAA-GAGCTGAGGAAGAGTTTGGTTTTGATCATGACATGGGTCTCACCATTCCTTGTGA 304
Query 370 TGAACTCGTT-TTTCAA-ACCCTAACATCCATGATCCGATGATATTTTATCA-TTTGAAG 426
||||||| || |||||| | | | || ||||||||| ||||| || | | | ||| |||
Sbjct 305 TGAACTC-TTCTTTCAAGATC-TGACTTCCATGATCAGATGAGATCTCAAAAGTTTTAAG 362
Query 427 AAGAAGCAGAA 437
|| ||| ||||
Sbjct 363 AACAAGAAGAA 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25618600224
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5