BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34770.1
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491178 jgi|Araly1|491178|fgenesh2_kg.7__611__AT4G34770.1 898 0.0
> Ahg491178 jgi|Araly1|491178|fgenesh2_kg.7__611__AT4G34770.1
Length=605
Score = 898 bits (486), Expect = 0.0
Identities = 570/609 (94%), Gaps = 11/609 (2%)
Strand=Plus/Plus
Query 63 TCACCACCTAAAAAGTTCTTTCAAAATCTCCCTTCTTACTCATTTGCATTAG-TCCTCAA 121
||| ||||||||||||| |||||||||||||||| ||| ||| ||||||| | |||||||
Sbjct 1 TCATCACCTAAAAAGTTTTTTCAAAATCTCCCTTTTTAGTCACTTGCATT-GATCCTCAA 59
Query 122 AGATGGGTATCCAATTGATCGGACTCTCTCAGGCAAAGCAAAAGCTTCAAAGAAGCTTAT 181
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 60 AGATGGGTATCCAATTGATCGGACTATCTCAAGCAAAGCAAAAGCTTCAAAGAAGCTTAT 119
Query 182 CAGCGAGAATCGCAAGCCTCTTGGCTACGTCGGGTACTAATAATGTCCCAAAGGGTCATG 241
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGGCAAGAATCGCAAGTCTCTTGGCTACGTCGGGTACTAATAATGTCCCAAAGGGTCATG 179
Query 242 TGGCCGTCTATGT-GGGAGAGACTTATCACAGGAAGAGATTTGTGATACCTATATCGTAT 300
||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 180 TGGCCGTCTATGTTGGG-GAGACTTATCAAATGAAGAGATTTGTGATACCTATATCGTAT 238
Query 301 TTAAACCACCCATTGTTCCAAGGTTTGTTGAACCTCGCGGAAGAAGAGTTCGGGTTCGAC 360
||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 239 CTAAACCATCCACTGTTCCAAGGTTTGTTGAACCTTGCGGAAGAAGAGTTCGGGTTTGAC 298
Query 361 CATCCCATGGGAGGTCTCACCATCCCTTGCACTGAAGATTACTTCACCGCTCTAGCTTCT 420
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 299 CATCCCATGGGAGGTCTCACCATCCCTTGCACTGAAGATTACTTCACTGCTCTAGCTTCG 358
Query 421 ATTCTAAGTGGTTCATGATAAGGGAGCT--C--ATTGATCATCACAACATTCATTAAGTT 476
|||||||||||||||||||||||||||| | | |||||||||||| |||||||| |||
Sbjct 359 ATTCTAAGTGGTTCATGATAAGGGAGCTAGCTCACTGATCATCACAATATTCATTAGGTT 418
Query 477 TCTTTATACAAATCTTTGTGTTTCTCTTAAAATGTATTTAAGGGGGGAGAGAAAATAACT 536
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 419 TCTTTATACAAATCTTTGTGTTTCTCTTAAAATGTATTTAAGTGG--AGAGAAAATAACT 476
Query 537 CGAGACTGAGAAACTAAGTGAGTCTCTTTCAATTTTTGATCTAAAATGATCTTGTGAGTT 596
||||||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 477 CGAGACTGAGATACTAAGTGAGTCTCTTTCAAATTTTGATCAAAAATGATCGTGTGAGTT 536
Query 597 CTTTT-AACCATTCCATTTGTAAAGAATTCACTATCTGAAAAATTAATCTATGATTCTTT 655
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 CTTTTTAACCATTCCATTTGTAAAGAATTCACTTTCTGAAAAATTAATCTATGATTCTTT 596
Query 656 TTGTCCATT 664
|||||||||
Sbjct 597 TTGTCCATT 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24360543963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5