BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34780.1
Length=321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944419 jgi|Araly1|944419|scaffold_700648.1 483 4e-136
> Ahg944419 jgi|Araly1|944419|scaffold_700648.1
Length=365
Score = 483 bits (261), Expect = 4e-136
Identities = 302/322 (94%), Gaps = 2/322 (1%)
Strand=Plus/Plus
Query 1 ATGATTCGATTCAAGACTATAGTTTTTCAAGTCAAGAGAGTACTCGATAAAAAGATATCG 60
||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 24 ATGATTCAATTCAAGACTATAGTTATTCAAGTCAAGAGAGTAGTCGATAAAAAGATATCG 83
Query 61 CGTTTAAGACACATAATCAACGTACGAAAGGGTCACTTTGCGGTATATGTTGGAGAAGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 84 CGTTTAAGACACATAATCAACGTACGAAAGGGTCACTTTGCGGTATATGTTGGTGTAGAC 143
Query 121 GAG-ATGGAGACGAAGAGATTTGTGGTTCCAATATCTTACTTAAACCATCCTTTGTTCCA 179
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GAGGAAG-AGACGAAGAGATTTGTGGTTCCAATATCTTACTTAAACCATCCTTTGTTCCA 202
Query 180 AGCCTTGTTGCGTAAAGCCGAAGATGAATTTGGCACAGATCATCAGAGGACATACCTCAC 239
||||||||||| | ||||||||||||| || |||||||||||| |||||| || ||||||
Sbjct 203 AGCCTTGTTGCTTCAAGCCGAAGATGAGTTCGGCACAGATCATAAGAGGAAATCCCTCAC 262
Query 240 AATTCCTTGTGCTAAAGATGTCTTTCTTGACATCACTTCTCGTCTGAAGCGTAATAAATT 299
||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 263 AATCCCTTGTGCTAAAGATGTCTTTATTGACATCACTTCTCGTCTGAAGCGTAGTAAATT 322
Query 300 TATTAGTACTGAAATTAATTAA 321
|||||| ||||||| |||||||
Sbjct 323 TATTAGAACTGAAAGTAATTAA 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11332209933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5