BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G34790.1

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944418 jgi|Araly1|944418|scaffold_700647.1                        523    6e-148


> Ahg944418 jgi|Araly1|944418|scaffold_700647.1
Length=362

 Score =  523 bits (283),  Expect = 6e-148
 Identities = 338/363 (93%), Gaps = 9/363 (2%)
 Strand=Plus/Plus

Query  48   GTTCCAAACATAAATAAGAAGACATGGGTTTAATGAGGTCGATGCTTCCAAATGCAAAGC  107
            ||| |||| ||||| ||||||  |||||||||||| ||||||||||||||||||||||||
Sbjct  1    GTTGCAAATATAAAGAAGAAG--ATGGGTTTAATGCGGTCGATGCTTCCAAATGCAAAGC  58

Query  108  AAATCTTCAAATCACAATCTATGAGGAACAAGAACGGATCATCCTCACCATCAACAACAA  167
            ||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||  || |||
Sbjct  59   AAATCTTCAAATCACAATCTATGAGAAACAAAAACGGATCATCATCATCATC--CA-CAA  115

Query  168  CAACAACTTCAGGGCTTGTTCCGAAAGGTCACGTAGCGGTTTACGTTGGAGAACAAATGG  227
            ||||   ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  116  CAAC---TTCAGGGCTTGTTCCGAAAGGTCACGTAGCGGTTTACGTGGGAGAACAAATGG  172

Query  228  AGAAGAAGAGGTTTGTGGTTCCAATATCATACTTGAACCATCCTTTGTTCAGAGAATTTC  287
            |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  173  AGAAAAAGAGGTTTGTGGTTCCAATATCATACTTGAACCATCCTTTGTTCCGAGAATTTC  232

Query  288  TTAATCGCGCTGAGGAAGAATGCGGATTTCATCACTCTATGGGTGGCTTGACGATACCTT  347
            ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct  233  TTAATCGCGCTGAGGAAGAGTGTGGATTTCATCACTCCATGGGTGGCTTGACGATACCTT  292

Query  348  GTCGAGAAGAGTCGTTTCTTTATCTCATTACTTCTCATCAGCTGCATTGAGGAACGCAT-  406
            || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  293  GTAGAGAAGAGTCGTTTCTTCATCTCATTACTTCTCATCAGCTGCATTGAGGAACGCATG  352

Query  407  TAA  409
            |||
Sbjct  353  TAA  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25161125220


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5