BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34800.1
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944417 jgi|Araly1|944417|scaffold_700646.1 472 8e-133
> Ahg944417 jgi|Araly1|944417|scaffold_700646.1
Length=325
Score = 472 bits (255), Expect = 8e-133
Identities = 275/285 (96%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATTAGATTGTCGCGTGTGATCAACTCTAAACAGTCCCAAAAACAGCAATCTCGA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCGATTAGATTGTCGCGTGTTATCAACTCTAAACAGTCCCAAAAACAGCAATCTCGA 80
Query 61 GTCCCGAAAGGACATGTTGCGGTTTATGTCGGAGAAGAGATGGAGAGCAAGAAGAGATTC 120
||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 81 GTCCCAAAAGGACATGTTGCGGTTTATGTAGGAGAAGAGATGGAGAACAAGAAGAGGTTC 140
Query 121 GTGGTTCCGATTTCGTATTTGAACCATCCTTCATTTCAAGGTTTGCTTAGTAGAGCAGAG 180
|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 141 GTGGTTCCGATTTCGTATTTGAACCACCCTTCGTTTCAAGGTTTGCTTAGTCGAGCAGAG 200
Query 181 GAAGAGTTTGGTTTCAATCATCCAATCGGTGGATTAACGATTCCATGCAGAGAAGAAACA 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 201 GAAGAGTTTGGTTTCAATCATCCAATTGGTGGATTAACGATTCCATGCAGAGAAGAAACA 260
Query 241 TTTGTTGGTCTTTTGAATTCTTATGGTTGTATTGTTTCAACTTGA 285
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 261 TTTGTTGGTCTCTTGAATTCTTATGGTTGTATTGTTTCAACTTGA 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9958608729
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5