BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34810.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944416 jgi|Araly1|944416|scaffold_700645.1 544 2e-154
> Ahg944416 jgi|Araly1|944416|scaffold_700645.1
Length=362
Score = 544 bits (294), Expect = 2e-154
Identities = 310/318 (97%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCTGAGCCGTTTTGCGATATCAAATGCAACAAAGCAGATATTGAAGCTAAACTCA 60
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 25 ATGGGTCTAAGCCGTTTTGCAATTTCAAATGCAACAAAGCAGATATTGAAGCTAAACTCA 84
Query 61 TTGGCAAACAGAAACCGAACCTCATCATCATCATCGGATCATGTCCCTAAAGGACACGTA 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 85 TTGGCAAACAGAAACCGAACATCATCATCATCATCGGATCATGTCCCTAAAGGACACGTA 144
Query 121 GCAGTTTATGTAGGAGAACAGATTGAGATGGAGAAGAAGAGATTCGTGGTTCCAATATCG 180
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 145 GCAGTTTACGTAGGAGAACAGATTGAGGTGGAGAAGAAGAGATTCGTGGTTCCAATATCG 204
Query 181 TTTCTGAATCATCCTTCCTTCAAAGAGTTCCTTAGTCGAGCAGAGGAAGAGTTTGGATTC 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 205 TTTCTGAATCATCCTTCCTTCAAAGAGTTTCTTAGTCGAGCAGAGGAAGAGTTTGGATTC 264
Query 241 AATCATCCAATGGGAGGCTTGACCATTCCTTGTAGAGAAGAAGTTTTTCTTGATCTCATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 AATCATCCAATGGGAGGCTTGACCATTCCTTGTAGAGAAGAAGTTTTTCTTGATCTCATC 324
Query 301 GCTTCTCGGTTACAATAA 318
|||||||||||||| |||
Sbjct 325 GCTTCTCGGTTACATTAA 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11217743166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5