BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34840.1
Length=1066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491173 jgi|Araly1|491173|fgenesh2_kg.7__606__AT4G34840.1 1487 0.0
> Ahg491173 jgi|Araly1|491173|fgenesh2_kg.7__606__AT4G34840.1
Length=987
Score = 1487 bits (805), Expect = 0.0
Identities = 934/995 (94%), Gaps = 13/995 (1%)
Strand=Plus/Plus
Query 1 CGGCGACGGATTCTCAGACGCTGCTATGGAAGGTGTTATGGGTCAGGTAGAGAAACGGCC 60
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1 CGGCGACGGATTCTCAGACGCTGCAATGGAAGGTCTTATGGGTCAGGTAGAGAAACGGCA 60
Query 61 GATTTCTACCATCGTCTTCATCGTTGCTATGCAAAAGGAAGCTCAGCCTCTGATCAACAG 120
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GATTTCTACCGTTGTCTTCATCGTCGCTATGCAAAAGGAAGCTCAGCCTCTGATCAACAG 120
Query 121 ATTACGCCTCGTTGAAGAAGTTAATACTCCGTTTCCAAAAGAGGTGACTTGGATTATGTT 180
|||||| || ||| ||||||||| ||| |||||||||||||||||||||||| || ||||
Sbjct 121 ATTACGGCTAGTTAAAGAAGTTACTACGCCGTTTCCAAAAGAGGTGACTTGGGTTCTGTT 180
Query 181 TAAGGGAATGTATAAAGACTTGAACATCAATATAGTGTGTCCTGGAAAAGATTCAACTCT 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 TAAGGGAATGTATAAAGACTTGAACATCAATATAGTGTGTCCAGGAAAAGATTCAACTCT 240
Query 241 TGGGGTTGAGAGTGTTGGCACAGTTCCTGCATCACTCGTGACTTATGCTTCCATTCTAGC 300
|||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TGGGGTCGAGAGTGTAGGCACGGTTCCTGCATCCCTCGTGACTTATGCTTCCATTCTAGC 300
Query 301 AATTCAACCAGACTTAATCATTAATGCGGGAACCGCTGGTGGCTTTAAGGCCAAAGGAGC 360
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 AATTCAACCCGACTTAATCATTAATGCGGGAACCGCTGGTGGGTTTAAGGCCAAAGGAGC 360
Query 361 ATGTATTAGCGATGTTTATGTTGTCTCTACTGTTGCTTTCCATGACAGAAGAATACCTGT 420
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 361 GTGTATTAGCGATGTTTATGTTGTCTCCACTGTTGCTTTCCATGACAGAAGAATACCAGT 420
Query 421 TCCTGTCCTTGATATATATGGTGTTGGTATGCGGAACA-CCTTCCCCACACCCAACCTTA 479
|||||| |||||| |||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 421 TCCTGTTCTTGATCTATACGGTGTTGGTATGCGGAA-AGCCTTCCCCACACCCAACCTTA 479
Query 480 TAAAGGAGCTGAACCTAAAGGTGGGAAGATTATCCACTGGCGATTCTATGGATATGTCTC 539
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 480 TAAAGGAGCTGAACCTAAAGGTAGGAAGATTATCTACTGGCGATTCTATGGATATGTCTC 539
Query 540 CACATGACGAAGAATCCATCACAGCAAATGATGCTACAGTTAAAGATATGGAGGGAGCAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CACATGACGAAGAATCCATCACAGCAAATGATGCTACAGTTAAAGATATGGAGGGAGCAG 599
Query 600 CAGTGGCCTATGTGGCTGATATCTTTAAAGTGCCTACGATTCTAATAAAAGGTGTGACTG 659
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 CAGTGGCTTATGTGGCTGATATCTTTAAGGTGCCTACGATTCTAATAAAAGGTGTGACTG 659
Query 660 ATATTGTGGATGGCAATAGACCAACTTCTGAAGAATTTTTGGAGAACTTAGCTGCAGTCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATATTGTGGATGGCAATAGACCAACTTCTGAAGAATTTTTGGAGAACTTAGCTGCAGTCA 719
Query 720 CTGCCAAACTTGATGAGTCACTTACCAAAGTGATTGACTTCATCAGTGGGAAATGTCTCT 779
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 720 CTGCCAAACTTGATGAGTCACTTACCAAAGTGATTGAATTCATCACTGGGAAGTGTCTCT 779
Query 780 CAGACCTCTAACAAGTCATACGTATTAAGT-TTCATCTGTTCAGT-ATGTGCATTGGGCG 837
||||||||| ||||||||| | |||||| || | ||||| | |||||||||||| |
Sbjct 780 CAGACCTCTGACAAGTCATGCATATTAACCATTAAG--GTTCACTTATGTGCATTGGG-G 836
Query 838 AA-GAAAGCATATGAAGATTCAAGCAAAGGGCGTAGGTAGGGAATAGGTTTGAGCAGAAA 896
|| ||||| |||| |||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 837 AAAGAAAGGATATAAAGATTCAAGCAAAGGGCATAGGTAGGGAATAGTTTTGAGAAGAAA 896
Query 897 TTTCAACTCTTCACCTTTTCTCATTTGTTCCTCTATTTCTTTTTGCTGTCTTTCT-ATTG 955
|||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||| || |
Sbjct 897 TTTCAACTCTTCACCTTTCCTCATTTGTTCTTCTATTT-TTT--GCTGTCTTTCTTAT-G 952
Query 956 ATGATCCATCATACATGTAGAAACTCAGCAAATTT 990
|||||||||||||||||||||||||||||||||||
Sbjct 953 ATGATCCATCATACATGTAGAAACTCAGCAAATTT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39685956597
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5