BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34850.1
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491172 jgi|Araly1|491172|fgenesh2_kg.7__605__AT4G34850.1 2128 0.0
Ahg491170 jgi|Araly1|491170|fgenesh2_kg.7__603__AT4G34860.1 108 1e-22
> Ahg491172 jgi|Araly1|491172|fgenesh2_kg.7__605__AT4G34850.1
Length=1330
Score = 2128 bits (1152), Expect = 0.0
Identities = 1273/1330 (96%), Gaps = 14/1330 (1%)
Strand=Plus/Plus
Query 1 AGACCCAAGATTTGAGTC-TT--C-A-A-CAAACAGATACAAATGGGAAGCATCGATGCT 54
|||||||||||||||||| || | | | ||||| ||| |||||||||||||||||||
Sbjct 1 AGACCCAAGATTTGAGTCTTTGACAAGAGAAAACATATAGAAATGGGAAGCATCGATGCC 60
Query 55 GCAGTGTTGGGTTCAGAGAAGAAATCAAACCCGGGAAAAGCCACAATTCTTGCTCTGGGA 114
| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 61 GAAGTATTGGGTTCAGAGAAGAAATCAAACCCGGGAAAAGCGACAATTCTTGCTCTCGGA 120
Query 115 AAAGCCTTTCCTCACCAGCTAGTAATGCAAGAGTACTTAGTCGATGGCTACTTCAAAACC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGCCTTTCCTCACCAGCTAGTAATGCAAGAGTACTTAGTCGATGGCTACTTCAAAACC 180
Query 175 ACCAAGTGTGATGACCCTGAACTCAAACAGAAACTTACTCGTCTCTGCAAGACAACAACG 234
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 ACCAAGTGTGATGACCCTGAACTCAAACAGAAGCTTACTCGTCTCTGCAAGACAACAACG 240
Query 235 GTGAAGACAAGGTATGTTGTGATGTCAGAGGAGATTCTCAAGAAGTACCCAGAACTTGCC 294
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 241 GTGAAGACAAGGTATGTTGTGATGTCGGAGGAGATTCTCAAGAAGTATCCAGAACTTGCC 300
Query 295 ATTGAAGGAGGATCCACAGTGACGCAGCGTCTAGACATCTGCAACGATGCAGTGACCGAG 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTGAAGGAGGATCCACAGTGACGCAGCGTCTAGACATCTGCAACGATGCAGTGACCGAG 360
Query 355 ATGGCAGTAGAAGCCTCCAGAGCCTGCATCAAGAACTGGGGACGTTCTATTTCCGACATA 414
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||
Sbjct 361 ATGGCAGTAGAAGCCTCCAGAGCATGCATCAAGAACTGGGGGCGTTCTATTTCGGAAATA 420
Query 415 ACTCACGTTGTCTATGTCTCCTCAAGCGAAGCTCGTCTTCCTGGTGGGGACTTGTACCTG 474
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 ACTCACCTTGTCTATGTCTCCTCAAGCGAAGCTCGTCTTCCTGGTGGGGACTTGTACTTA 480
Query 475 GCCAAGGGGCTTGGACTCAGTCCTGACACACACCGTGTTCTGCTCTACTTTGTTGGCTGT 534
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 481 GCCAAGGGGCTTGGACTCAGTCCTGACACACACCGTGTTCTGCTCTACTTCGTCGGCTGT 540
Query 535 TCTGGTGGCGTTGCAGGTCTCCGTGTAGCCAAAGACATCGCCGAGAATAATCCGGGCAGT 594
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 TCTGGTGGCGTTGCAGGTCTCCGTGTAGCCAAAGACATAGCCGAGAATAATCCGGGCAGT 600
Query 595 AGAGTTTTGCTTGCCACGTCTGAGACAACCATCATTGGGTTCAAGCCCCCAAGTGTGGAT 654
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 601 AGAGTTTTGCTTGCCACGTCCGAGACAACCATCATTGGGTTCAAACCCCCAAGTGTGGAT 660
Query 655 AGACCGTATGATCTTGTTGGGGTCGCGTTGTTTGGTGATGGAGCCGGAGCTATGATCATT 714
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 661 AGACCGTATGATCTTGTTGGGGTGGCGTTGTTTGGTGATGGAGCCGGAGCTATGATCGTC 720
Query 715 GGATCCGATCCAGACCCGATCTGCGAGAAGCCTCTCTTTGAGCTTCATACTGCAATACAG 774
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 GGATCCGATCCAGACCCGATCTGCGAGAAGCCTCTCTTTGAGCTTCACACTGCAATACAG 780
Query 775 AACTTTTTACCTGAAACAGAGAAGACGATAGATGGAAGGCTAACAGAACAAGGGATAAAC 834
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 AATTTTTTACCTGACACAGAGAAGACAATAGATGGAAGGCTAACAGAACAAGGGATAAAC 840
Query 835 TTCAAGCTATCGAGAGAGCTTCCACAGATAATAGAAGACAATGTGGAGAATTTCTGCAAG 894
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 TTCAAGCTAGCGAGAGAGCTTCCACAGATAATAGAAGACAACGTGGAGAATTTCTGCAAG 900
Query 895 AAGCTAATAGGAAAAGCGGGACTGGCTCATAAGAACTATAACCAGATGTTCTGGGCGGTT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGCTAATAGGAAAAGCGGGACTGGCTCATAAGAACTATAACCAGATGTTCTGGGCGGTT 960
Query 955 CATCCAGGTGGACCAGCCATCTTGAACCGGATTGAAAAGCGGCTTAACCTGTCGCCTGAG 1014
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 961 CATCCAGGTGGACCAGCCATTTTGAATCGGATGGAAAAGCGGCTTAACCTGTCGCCTGAG 1020
Query 1015 AAGCTGAGTCCAAGCAGAAGAGCTCTCATGGACTATGGCAATGCGAGCAGCAATTCAATT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAGCTGAGTCCAAGCAGAAGAGCTCTCATGGACTATGGCAATGCGAGCAGCAATTCAATT 1080
Query 1075 GTTTATGTGCTGGAGTATATGTTGGAGGAGAGCAAGAAAGTGAGGAACATGAATGAAGAA 1134
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GTTTATGTGTTGGAGTATATGTTGGAGGAGAGCAAGAAAGTGAGGAACATGAATGAAGAA 1140
Query 1135 GAAAACGAGTGGGGTCTGATTCTTGCTTTTGGACCTGGTGTTACATTTGAAGGCATTATC 1194
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1141 GAAAACGAGTGGGGTCTGATTCTGGCTTTTGGACCTGGTGTTACATTTGAAGGCATCATC 1200
Query 1195 GCTCGAAACCTTGATGTCTGAACAATAA-GTT-----TTTACCTTGCAGATCGAGAAAGA 1248
||| |||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 1201 GCTAGAAACCTTGATGTCTGAACAATAAAGTGAAAGGTTTACCTTGCAGATCAAGAAAGA 1260
Query 1249 ACCCCTTAT--GCTTTAATAAAGACATGAAGCTAAACATACGAAATATTTTTTACGATGC 1306
||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ACCCCTTCTTTGCTATAATAAAGACATGAAGCTAAACATACGAAATATTTTTTACGATGC 1320
Query 1307 TTAAATCTTT 1316
||||||||||
Sbjct 1321 TTAAATCTTT 1330
> Ahg491170 jgi|Araly1|491170|fgenesh2_kg.7__603__AT4G34860.1
Length=2287
Score = 108 bits (58), Expect = 1e-22
Identities = 63/65 (97%), Gaps = 2/65 (3%)
Strand=Plus/Minus
Query 1262 TAATAAAGACATGAAGCTAAACATACGAAATATTTTTTACGATGCTTAAATCTTT--CAT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2286 TAATAAAGACATGAAGCTAAACATACGAAATATTTTTTACGATGCTTAAATCTTTTTCAT 2227
Query 1320 AGTCT 1324
|||||
Sbjct 2226 AGTCT 2222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49521669183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5