BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34870.1
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491169 jgi|Araly1|491169|fgenesh2_kg.7__602__AT4G34870.1 905 0.0
Ahg931489 jgi|Araly1|931489|scaffold_303946.1 387 1e-106
> Ahg491169 jgi|Araly1|491169|fgenesh2_kg.7__602__AT4G34870.1
Length=896
Score = 905 bits (490), Expect = 0.0
Identities = 570/608 (94%), Gaps = 7/608 (1%)
Strand=Plus/Plus
Query 84 AATCTTCTTCATCGATTTCTCTCTTCCAAATC-TCC-CAAAAGATGTCGAACCCTAGAGT 141
|||||||||||||||||||||||||| ||||| ||| |||| ||| | |||||||||||
Sbjct 55 AATCTTCTTCATCGATTTCTCTCTTCAAAATCTTCCAGAAAAAATGGCAAACCCTAGAGT 114
Query 142 TTTCTTCGACATGAGTCTCAGCGGTACTCCCATCGGACGGATCGAGATGGAGCTTTTCGC 201
|||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 115 TTTCTTCGACATGAGTCTGAGCGGTACTCCGATCGGTCGGATCGAGATGGAGCTATTCGC 174
Query 202 TGATACAACCCCAAACACGGCGGAGAATTTCCGTGCTCTCTGTACCGGCGAGAAAGGAAT 261
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 175 TGATACGACCCCAAACACGGCGGAGAATTTCCGTGCTCTGTGTACCGGAGAGAAAGGAAT 234
Query 262 GGGAAAGCTAGGTAAGCCACTTCACTTCAAAGGATCGATCTTCCACCGTGTGATTCCCGG 321
|||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 235 CGGAAAGATGGGTAAGCCACTTCACTACAAGGGATCGATCTTCCACCGTGTGATTCCCGG 294
Query 322 ATTCATGTGTCAAGGAGGTGATTTCACCGCCAAGAACGGAACCGGTGGTGAATCGATCTA 381
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATTCATGTGTCAGGGAGGTGATTTCACCGCCAAGAACGGAACCGGTGGTGAATCGATCTA 354
Query 382 CGGTGCTAAGTTCAAGGACGAGAACTTTATCAAGAAGCATACAGGAGCTGGGATTCTCTC 441
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 355 CGGTGCTAAGTTCAAAGACGAGAACTTTATTAAGAAGCATACCGGAGCTGGGATTCTCTC 414
Query 442 AATGGCTAACTCTGGTCCTAACACTAACGGATCTCAGTTCTTCATCTGTACCGATAAGAC 501
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AATGGCTAACTCTGGTGCTAACACTAACGGATCTCAGTTCTTCATCTGTACCGATAAGAC 474
Query 502 GTCGTGGTTAGATGGTAAGCACGTTGTGTTTGGACAAGTTGTTAAAGGCTTGGACGTCGT 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CTCGTGGTTAGATGGTAAGCACGTTGTGTTTGGACAAGTTGTTAAAGGCTTGGACGTCGT 534
Query 562 GAAGGCGATTGAGAAAGTTGGATCTGATTCTGGAAAGACTTCCAAAGTCGTTACCATCAC 621
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 535 CAAGGCCATTGAGAAAGTTGGATCTGATTCTGGAAAGACTTCCAAAGTCGTAACCATCAC 594
Query 622 TGATTGTGGTCAGCTTTCTTAGATCTGAGTGAGAAAGTGAGAGA----CTTTGATCTTTA 677
||||||||||||||||||||||||||||||||| | ||||||| | || |||||||
Sbjct 595 TGATTGTGGTCAGCTTTCTTAGATCTGAGTGAGTGACTGAGAGAAAGACCTT-ATCTTTA 653
Query 678 TGAGTAAT 685
||| ||||
Sbjct 654 TGAATAAT 661
Score = 93.5 bits (50), Expect = 3e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 2 TTTTCAGATTCACCGTTTTAGAAATTAAATCCTCTCTATAAGAACCTCTCCAAAAA 57
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCAGATTCACCGCTTTAAAAATTAAATCCTCTCTATAAGAACCTCTCCAAAAA 56
> Ahg931489 jgi|Araly1|931489|scaffold_303946.1
Length=562
Score = 387 bits (209), Expect = 1e-106
Identities = 437/545 (80%), Gaps = 24/545 (4%)
Strand=Plus/Plus
Query 131 AACCCTAGAGTTTTCTTCGACATGAGTC-TCAGCGGTACTCCCATC-GGACGGATCGAGA 188
||||||| ||||| |||||||||| | | || | ||| | || | || || |||| ||
Sbjct 30 AACCCTAAAGTTTACTTCGACATG-GCCGTCGGTGGT-CAATCAGCTGGTCGTATCGTGA 87
Query 189 TGGAGCTTTTCGCTGATACAACCCCA-AACACGGCGGAGAATTTCCGTGCTCTCTGTACC 247
||||||||||||| || ||||| ||| || || || ||||||||| | ||||||||||||
Sbjct 88 TGGAGCTTTTCGCGGACACAACACCAGAA-ACCGCCGAGAATTTCAGAGCTCTCTGTACC 146
Query 248 GGCGAGAAAGGAAT-GGGAAAGCTAGGTAAGCCACTT-CACTTCAAAGGATCGATCTTCC 305
|| ||||||||||| || ||| || ||||||||| || |||| |||||| || | ||| |
Sbjct 147 GGAGAGAAAGGAATCGGAAAATCT-GGTAAGCCA-TTACACTACAAAGGGTCAAGCTTTC 204
Query 306 ACCGTGTGATTCCCG-GATTCATGTGTCAAGGAGGTGATTTCACCGCCAAGAACGGAACC 364
||||||||||| ||| ||||||||||||||||||||||||||||||| ||| || |||
Sbjct 205 ACCGTGTGATT-CCGAAATTCATGTGTCAAGGAGGTGATTTCACCGCCGGGAATGGTACC 263
Query 365 GGTGGTGAATCGATCTACGGTGCT-AAGTTCAAGGACGAGAACTTTATCAAGAAGCATAC 423
|| |||||||| ||||| || || |||||||| || ||||||||| ||||||| |||||
Sbjct 264 GGAGGTGAATCTATCTATGGA-CTGAAGTTCAAAGATGAGAACTTTGTCAAGAAACATAC 322
Query 424 AGGAGCTGGGATTCTCTCAATGGCTAACTCTGGT-CCTAACACTAACGGATCTCAGTTCT 482
|||| | || ||| | || ||||||||| ||||| || |||||||| ||||||||||| |
Sbjct 323 AGGACCAGGTATTTTGTCTATGGCTAACGCTGGTGCC-AACACTAATGGATCTCAGTTTT 381
Query 483 TCATCTGTACCGATAAGACGTCGTGGTTAGATGGTAAGCACGTTGTGTTTGGACAAGTTG 542
| || ||||| || ||||| || ||| | ||||| || || ||||||||||| |||||||
Sbjct 382 TTATTTGTACTGAGAAGACTTCATGGCTCGATGGGAAACATGTTGTGTTTGGTCAAGTTG 441
Query 543 TTAAAGGCTTGGACGTCGTGA-AGGCGATTGAGAAAG-TTGGATCTGATTCTGGAAAGA- 599
|| |||| ||| | || || | || ||||| |||| |||||||||| ||||||| ||
Sbjct 442 TTGAAGGATTGAATGTTGTTAGAGAT-ATTGA-AAAGGTTGGATCTGACTCTGGAA-GAA 498
Query 600 CTTCCAAAGTC-GTTACCATCACTGATTGTGGTCAGCTTTCTTAGATCTGAGTGAGAAAG 658
|||| || | | ||| || ||||||||||||| |||||||||||| ||||| ||
Sbjct 499 CTTCTAA-GCCTGTTGTTATTGTTGATTGTGGTCAGATTTCTTAGATCTCTCTGAGAGAG 557
Query 659 TGAGA 663
||||
Sbjct 558 AGAGA 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36674246154
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5