BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34880.1 Length=1401 Score E Sequences producing significant alignments: (Bits) Value Ahg491168 jgi|Araly1|491168|fgenesh2_kg.7__601__AT4G34880.1 2080 0.0 Ahg347425 jgi|Araly1|347425|fgenesh1_pg.C_scaffold_5000817 259 4e-68 Ahg344577 jgi|Araly1|344577|fgenesh1_pg.C_scaffold_4000919 259 4e-68 > Ahg491168 jgi|Araly1|491168|fgenesh2_kg.7__601__AT4G34880.1 Length=1371 Score = 2080 bits (1126), Expect = 0.0 Identities = 1248/1307 (95%), Gaps = 8/1307 (1%) Strand=Plus/Plus Query 99 GCTTAGCTCAACGTTCTCGATCCAAGAAGCTACCATTGAAGACATTAGAGTTGCTTTCAA 158 ||||| ||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| Sbjct 69 GCTTACCTCAATGTTCTCGATCCAAGAAGCCACCATTGAAGACATCAGACTTGCTTTCAA 128 Query 159 CGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTCCAAACT 218 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 GGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTCCAAACT 188 Query 219 TAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGATC--CAAGCAGAG 276 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 189 TAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCG--AATCAACAAGCAGAG 246 Query 277 ATCGCAGACAGAGAACGTGACCTTAAAAACACCACTAAGCTTCCTATCTTGCACGGTGTT 336 |||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 247 ATCGCAGACAAAGAACGTGACCTCAAAAACGCCACTAAGCTTCCTATCTTGCACGGTGTT 306 Query 337 CCGGTTCTTCTCAAGGATTCCATATCTACCAAGGACAAGCTTAACACCACGGCTGGCTCG 396 |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 307 CCGGTTCTGCTCAAGGATTCAATATCCACCAAGGACAAGCTTAACACCACGGCTGGCTCG 366 Query 397 TTTGCCTTGCTTGGTTCGGTCGTGGCTCGAGACGCGGGTGTTGTTAAAAGACTGAGAGAA 456 ||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||| Sbjct 367 TTTGCCTTGCTTGGTTCGGTCGTGGCTCGAGACGCCTGTGTTGTCAAGAGACTAAGAGAA 426 Query 457 TCTGGTGCTGTGATCTTGGGCAAAGCCAGTTTAAGTGAATGGGCTCATTTTCGATCTTTC 516 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 427 TCTGGTGCTGTGATCTTGGGCAAAGCCAGTTTAAGTGAATGGGCTAATTTTCGATCTTTC 486 Query 517 TCCATCCCAGATGGTTGGAGCGCACCAAGTCAGAACTCTGTGGTCGGGATTAAACCGAGT 576 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 487 TCCATCCCAGATGGTTGGAGCGCACCAAGTCAGAGCTCTGTGGTCGGGATTAAACCGAGT 546 Query 577 GTCGGACTCACGAGCCGAGCCGGGGTAGTTCCTATCTCCTTGAGACAGGACAGTATTGGG 636 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 547 GTCGGGCTCACGAGCCGAGCCGGGGTAGTTCCTATCTCCTTGAGACAGGACAGTATAGGG 606 Query 637 CCGATTTGTAGGACAGTGTCGGATGCTGTTCATCTCCTTGATGCTATTGTGGGTTATGAT 696 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 607 CCGATTTGTAGGACAGTTTCGGATGCTGTTCATCTCCTTGATGCTATTGTTGGTTATGAT 666 Query 697 CCATTGGACGAGGCCACGAAAACTGCGTCCGAGTTCATACCTGAAGGCGGTTACAAGCAG 756 ||||||||| ||||||| ||| ||||||| ||||||||||||||||| |||||||||||| Sbjct 667 CCATTGGACAAGGCCACCAAATCTGCGTCTGAGTTCATACCTGAAGGGGGTTACAAGCAG 726 Query 757 TTTCTGACAACTAGTGGCCTCAAAGGTAAGAGATTAGGGATTGTAATGAAGCATTCTTCT 816 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 727 TTTCTGACAACTAGTGGCCTCAAAGGTAAGAGATTAGGGATTGTAATGAAGCATTCTTCT 786 Query 817 CTTCTTGATCATCACATCAAAACATTAAGACGAGAAGGCGCTATTGTCATTAACAATCTG 876 | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 787 CGTCTTGATCATCACATCAAAACATTAAGACGAGAAGGTGCTATCGTCATTAACAATCTA 846 Query 877 ACGATACCAAACATCGAAGTCATTGTGGGTGGGACTGATAGTGGTGAAGAGATAGCACTT 936 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 847 ACGATACCAAACATGGAAGTCATTGTGGGTGGGACTGATAGTGGTGAAGAGATAGCACTT 906 Query 937 TTGGCTGAGTTCAAGATGTCTCTCAATGCATATCTTAAAGAGCTTGTGAAATCACCAGTC 996 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907 TTGGCTGAGTTCAAGATGTCTCTCAATGCATATCTTAAAGAGCTTGTGAAATCACCAGTC 966 Query 997 CGGTCCTTAGCAGATGTTATTGCCTACAACGAGGAATTCGCTGAACAAGAAAAAGTGAAA 1056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 967 CGGTCCTTAGCAGATGTTATTGCCTACAACGAGGAATTCGCTGAACAAGAAAAAGTGAAA 1026 Query 1057 GAATGGGGACAAGAGGTGTTCCTTACAGCAGAAGCCACTAGTGGAATGGGTGAGAAAGAG 1116 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1027 GAATGGGGACAAGAGGTGTTCCTTACAGCAGAAGCCACAAATGGAATGGGTGAGAAAGAG 1086 Query 1117 AAAACAGCGTTGCAGAAAATGAAAGAACTATCGAGGAATGGAATCGAAAAGCTAATTGAA 1176 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1087 AAAGCAGCGTTGCAAAAAATGAAAGAACTATCGAGGAATGGAATCGAAAAGCTAAT-GAA 1145 Query 1177 -GAGAACAAGTTAGATGCAATAGTGACACTTGGTTCA-GATTTGAGCTCTGTCCTAGCCA 1234 |||| || |||||| |||||||| ||||||||||| | ||||||||||||||| |||| Sbjct 1146 AGAGAGGAATTTAGATTCAATAGTGGCACTTGGTTCAAG-TTTGAGCTCTGTCCTCGCCA 1204 Query 1235 TTGGAGGGTATCCAGGAATCAATGTCCCTGCAGGATACGATAGTGGAGGAGTTCCATATG 1294 ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || Sbjct 1205 TTGGAGGGTATCCAGGAATCAATGTCCCTGCAGGATATGATAATGGAGGAGTTCCATTTG 1264 Query 1295 GGATTAGCTTTGGAGGACTGAGATTCTCAGAGCCAAAGCTCATTGAGATTGCTTTTGCCT 1354 | || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1265 GAATAAGCTTTGGAGGACTGAGATTCTCAGAGCCAAAGCTCATTGAGATTGCTTATGCCT 1324 Query 1355 TTGAACAAGCAACTCTTATTAGAAAGCCACCCAAGTTCATAGCTTGA 1401 | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1325 TCGAACAAGCAACTCTTATTAGAAAGCCACCCAAGTTCATAGCTTGA 1371 > Ahg347425 jgi|Araly1|347425|fgenesh1_pg.C_scaffold_5000817 Length=1389 Score = 259 bits (140), Expect = 4e-68 Identities = 163/174 (94%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 94 ATCAGGCTTAGCTCAACGTTCT-CGATCCAAGAAGCTACCATTGAAGACATTAGAGTTGC 152 |||||||||| ||| ||||| | | ||||||||||| |||||||||||||| ||| |||| Sbjct 55 ATCAGGCTTACCTCGACGTT-TGCTATCCAAGAAGCCACCATTGAAGACATCAGACTTGC 113 Query 153 TTTCAACGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTC 212 ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 114 TTTTAAGGAGAAACGACTAACATCAAAGCAGCTTGTTGAGTTGTATCTCGAAGCAATCTC 173 Query 213 CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT 227 > Ahg344577 jgi|Araly1|344577|fgenesh1_pg.C_scaffold_4000919 Length=822 Score = 259 bits (140), Expect = 4e-68 Identities = 163/174 (94%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 94 ATCAGGCTTAGCTCAACGTTCT-CGATCCAAGAAGCTACCATTGAAGACATTAGAGTTGC 152 |||||||||| ||| ||||| | | ||||||||||| |||||||||||||| ||| |||| Sbjct 55 ATCAGGCTTACCTCGACGTT-TGCTATCCAAGAAGCCACCATTGAAGACATCAGACTTGC 113 Query 153 TTTCAACGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTC 212 ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 114 TTTTAAGGAGAAACGACTAACATCAAAGCAGCTTGTTGAGTTGTATCTCGAAGCAATCTC 173 Query 213 CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT 227 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52374086875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5