BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34880.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491168 jgi|Araly1|491168|fgenesh2_kg.7__601__AT4G34880.1 2080 0.0
Ahg347425 jgi|Araly1|347425|fgenesh1_pg.C_scaffold_5000817 259 4e-68
Ahg344577 jgi|Araly1|344577|fgenesh1_pg.C_scaffold_4000919 259 4e-68
> Ahg491168 jgi|Araly1|491168|fgenesh2_kg.7__601__AT4G34880.1
Length=1371
Score = 2080 bits (1126), Expect = 0.0
Identities = 1248/1307 (95%), Gaps = 8/1307 (1%)
Strand=Plus/Plus
Query 99 GCTTAGCTCAACGTTCTCGATCCAAGAAGCTACCATTGAAGACATTAGAGTTGCTTTCAA 158
||||| ||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 69 GCTTACCTCAATGTTCTCGATCCAAGAAGCCACCATTGAAGACATCAGACTTGCTTTCAA 128
Query 159 CGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTCCAAACT 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTCCAAACT 188
Query 219 TAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGATC--CAAGCAGAG 276
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 189 TAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCG--AATCAACAAGCAGAG 246
Query 277 ATCGCAGACAGAGAACGTGACCTTAAAAACACCACTAAGCTTCCTATCTTGCACGGTGTT 336
|||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 247 ATCGCAGACAAAGAACGTGACCTCAAAAACGCCACTAAGCTTCCTATCTTGCACGGTGTT 306
Query 337 CCGGTTCTTCTCAAGGATTCCATATCTACCAAGGACAAGCTTAACACCACGGCTGGCTCG 396
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 307 CCGGTTCTGCTCAAGGATTCAATATCCACCAAGGACAAGCTTAACACCACGGCTGGCTCG 366
Query 397 TTTGCCTTGCTTGGTTCGGTCGTGGCTCGAGACGCGGGTGTTGTTAAAAGACTGAGAGAA 456
||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||
Sbjct 367 TTTGCCTTGCTTGGTTCGGTCGTGGCTCGAGACGCCTGTGTTGTCAAGAGACTAAGAGAA 426
Query 457 TCTGGTGCTGTGATCTTGGGCAAAGCCAGTTTAAGTGAATGGGCTCATTTTCGATCTTTC 516
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 427 TCTGGTGCTGTGATCTTGGGCAAAGCCAGTTTAAGTGAATGGGCTAATTTTCGATCTTTC 486
Query 517 TCCATCCCAGATGGTTGGAGCGCACCAAGTCAGAACTCTGTGGTCGGGATTAAACCGAGT 576
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 487 TCCATCCCAGATGGTTGGAGCGCACCAAGTCAGAGCTCTGTGGTCGGGATTAAACCGAGT 546
Query 577 GTCGGACTCACGAGCCGAGCCGGGGTAGTTCCTATCTCCTTGAGACAGGACAGTATTGGG 636
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 547 GTCGGGCTCACGAGCCGAGCCGGGGTAGTTCCTATCTCCTTGAGACAGGACAGTATAGGG 606
Query 637 CCGATTTGTAGGACAGTGTCGGATGCTGTTCATCTCCTTGATGCTATTGTGGGTTATGAT 696
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 607 CCGATTTGTAGGACAGTTTCGGATGCTGTTCATCTCCTTGATGCTATTGTTGGTTATGAT 666
Query 697 CCATTGGACGAGGCCACGAAAACTGCGTCCGAGTTCATACCTGAAGGCGGTTACAAGCAG 756
||||||||| ||||||| ||| ||||||| ||||||||||||||||| ||||||||||||
Sbjct 667 CCATTGGACAAGGCCACCAAATCTGCGTCTGAGTTCATACCTGAAGGGGGTTACAAGCAG 726
Query 757 TTTCTGACAACTAGTGGCCTCAAAGGTAAGAGATTAGGGATTGTAATGAAGCATTCTTCT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TTTCTGACAACTAGTGGCCTCAAAGGTAAGAGATTAGGGATTGTAATGAAGCATTCTTCT 786
Query 817 CTTCTTGATCATCACATCAAAACATTAAGACGAGAAGGCGCTATTGTCATTAACAATCTG 876
| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 787 CGTCTTGATCATCACATCAAAACATTAAGACGAGAAGGTGCTATCGTCATTAACAATCTA 846
Query 877 ACGATACCAAACATCGAAGTCATTGTGGGTGGGACTGATAGTGGTGAAGAGATAGCACTT 936
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 ACGATACCAAACATGGAAGTCATTGTGGGTGGGACTGATAGTGGTGAAGAGATAGCACTT 906
Query 937 TTGGCTGAGTTCAAGATGTCTCTCAATGCATATCTTAAAGAGCTTGTGAAATCACCAGTC 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TTGGCTGAGTTCAAGATGTCTCTCAATGCATATCTTAAAGAGCTTGTGAAATCACCAGTC 966
Query 997 CGGTCCTTAGCAGATGTTATTGCCTACAACGAGGAATTCGCTGAACAAGAAAAAGTGAAA 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CGGTCCTTAGCAGATGTTATTGCCTACAACGAGGAATTCGCTGAACAAGAAAAAGTGAAA 1026
Query 1057 GAATGGGGACAAGAGGTGTTCCTTACAGCAGAAGCCACTAGTGGAATGGGTGAGAAAGAG 1116
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1027 GAATGGGGACAAGAGGTGTTCCTTACAGCAGAAGCCACAAATGGAATGGGTGAGAAAGAG 1086
Query 1117 AAAACAGCGTTGCAGAAAATGAAAGAACTATCGAGGAATGGAATCGAAAAGCTAATTGAA 1176
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1087 AAAGCAGCGTTGCAAAAAATGAAAGAACTATCGAGGAATGGAATCGAAAAGCTAAT-GAA 1145
Query 1177 -GAGAACAAGTTAGATGCAATAGTGACACTTGGTTCA-GATTTGAGCTCTGTCCTAGCCA 1234
|||| || |||||| |||||||| ||||||||||| | ||||||||||||||| ||||
Sbjct 1146 AGAGAGGAATTTAGATTCAATAGTGGCACTTGGTTCAAG-TTTGAGCTCTGTCCTCGCCA 1204
Query 1235 TTGGAGGGTATCCAGGAATCAATGTCCCTGCAGGATACGATAGTGGAGGAGTTCCATATG 1294
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 1205 TTGGAGGGTATCCAGGAATCAATGTCCCTGCAGGATATGATAATGGAGGAGTTCCATTTG 1264
Query 1295 GGATTAGCTTTGGAGGACTGAGATTCTCAGAGCCAAAGCTCATTGAGATTGCTTTTGCCT 1354
| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1265 GAATAAGCTTTGGAGGACTGAGATTCTCAGAGCCAAAGCTCATTGAGATTGCTTATGCCT 1324
Query 1355 TTGAACAAGCAACTCTTATTAGAAAGCCACCCAAGTTCATAGCTTGA 1401
| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 TCGAACAAGCAACTCTTATTAGAAAGCCACCCAAGTTCATAGCTTGA 1371
> Ahg347425 jgi|Araly1|347425|fgenesh1_pg.C_scaffold_5000817
Length=1389
Score = 259 bits (140), Expect = 4e-68
Identities = 163/174 (94%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 94 ATCAGGCTTAGCTCAACGTTCT-CGATCCAAGAAGCTACCATTGAAGACATTAGAGTTGC 152
|||||||||| ||| ||||| | | ||||||||||| |||||||||||||| ||| ||||
Sbjct 55 ATCAGGCTTACCTCGACGTT-TGCTATCCAAGAAGCCACCATTGAAGACATCAGACTTGC 113
Query 153 TTTCAACGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTC 212
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 114 TTTTAAGGAGAAACGACTAACATCAAAGCAGCTTGTTGAGTTGTATCTCGAAGCAATCTC 173
Query 213 CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT 227
> Ahg344577 jgi|Araly1|344577|fgenesh1_pg.C_scaffold_4000919
Length=822
Score = 259 bits (140), Expect = 4e-68
Identities = 163/174 (94%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 94 ATCAGGCTTAGCTCAACGTTCT-CGATCCAAGAAGCTACCATTGAAGACATTAGAGTTGC 152
|||||||||| ||| ||||| | | ||||||||||| |||||||||||||| ||| ||||
Sbjct 55 ATCAGGCTTACCTCGACGTT-TGCTATCCAAGAAGCCACCATTGAAGACATCAGACTTGC 113
Query 153 TTTCAACGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTC 212
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 114 TTTTAAGGAGAAACGACTAACATCAAAGCAGCTTGTTGAGTTGTATCTCGAAGCAATCTC 173
Query 213 CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT 227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5