BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34910.1
Length=2324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491167 jgi|Araly1|491167|fgenesh2_kg.7__600__AT4G34910.1 3249 0.0
> Ahg491167 jgi|Araly1|491167|fgenesh2_kg.7__600__AT4G34910.1
Length=2266
Score = 3249 bits (1759), Expect = 0.0
Identities = 2141/2312 (93%), Gaps = 79/2312 (3%)
Strand=Plus/Plus
Query 19 GAAACGCGGCGGAGGAGGTTTTA-CGACTATT-TTCCCTTCACTTCTTCATCTTCTTCCT 76
|||||||||||||||||| |||| | || ||| || ||| | ||| | |||||||||
Sbjct 1 GAAACGCGGCGGAGGAGG-TTTACCAACCATTATT---TTC-C--CTT-A-CTTCTTCCT 51
Query 77 GCGCCGCTTTTCAAACCTATTCGACCAGACAAACTCGGAAATTTCAT--ATTCCATGGGT 134
|||||||||||||||| |||||||| |||||| |||||||||||| | ||| |||||||
Sbjct 52 GCGCCGCTTTTCAAACTTATTCGACTAGACAAGCTCGGAAATTTC-TGAATT-CATGGGT 109
Query 135 AAGACGAAGTTA-AAACCTGTGGAGGATGTGAACTCGGAAGTGGTGGACGAAGTTgagaa 193
||||| ||| || ||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 110 AAGACCAAG-TATAAACCTGTGGAGGATGTGAACTCTGAAGTGGTGGATGATGTTGAGAT 168
Query 194 agcagaggaagttgaggaacagagaaacgac--ag-a---gaacaagaagaagagcaaaa 247
|||||||||||| || ||||||||||||||| || | ||| |||||||||| |||||
Sbjct 169 AGCAGAGGAAGTAGAAGAACAGAGAAACGACGGAGAAGTTGAAGAAGAAGAAGAACAAAA 228
Query 248 agaagaagaggcacctaaaagtttcgaagagCTAGGGCTTGATTCTCGTCTAATTCGTGC 307
| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 229 ACAAGAAGAGACACCTAAGAGTTTCGAAGAGCTAGGGCTTGATTCTCGTCTAATTCGTGC 288
Query 308 CCTAACTAAAAAGGGTATAGAGAAACCAACCCTTATTCAGCAATCAGCCATTCCTTACAT 367
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 289 GCTAACTAAAAAGGGTATAGAGAAACCAACCCTTATCCAGCAATCAGCCATTCCTTACAT 348
Query 368 TCTGGAAGGAAAAGATGTGGTTGCTAGGGCAAAGACTGGTTCAGGTAAGACTTTGGCTTA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TCTGGAAGGAAAAGATGTGGTTGCTAGGGCAAAGACTGGTTCAGGTAAGACTTTGGCTTA 408
Query 428 CCTTTTGCCATTGCTCCAGAAGCTATTTTCAGCAGATTCTGTG-AGCAAGAAGAAGCTTG 486
||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||||||
Sbjct 409 CCTTTTGCCATTGCTTCAGAAGCTGTTTTCAGCAGATTCTG-GAAGCAAGAAGAAGCTTG 467
Query 487 CTCCTTCTGCATTTATTCTTGTTCCATCTCGAGAACTATGTCAGCAGGTTTACACAGAGG 546
||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 468 CTCCTTCTGCATTTATTCTTGTTCCATCTCGAGAATTATGTCAGCAGGTTTACTCCGAGG 527
Query 547 TTTCATCGCTTATTGAGCTGTGTAGAGTTCAGCTAAAAGCAGTGCAGTTGACTAGTAGCA 606
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 528 TTTCTTCGCTTATTGAGCTGTGTAGGGTTCAGCTGAAAGCAGTGCAGTTGACTAGTAGCA 587
Query 607 TGTCTGCATCTGATATGCGTAATGCATTGGCTGGACTGCCTGAGATTCTTGTCTCCACAC 666
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 588 TGTCTGCTTCTGATATGCGTAATGCATTGGCTGGACTGCCTGAGGTTCTTGTCTCCACAC 647
Query 667 CTGCTTGTATTCCGAAATGTTTTGCTGCCGGAGTTTTAGAGCCCACTGCTGTCAGTGAAT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CTGCTTGTATTCCGAAATGTTTTGCTGCCGGAGTTTTAGAGCCCACTGCTGTCAGTGAAT 707
Query 727 CACTTTCAATTCTGGTTCTTGATGAGGCAGATCTTTTGTTGTCATATGGATATGAAGATA 786
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CACTTGCAATTCTGGTTCTTGATGAGGCAGATCTTTTGTTGTCATATGGATATGAAGATA 767
Query 787 ATCTAAGGTCGGTAACATCAATAATCCCAAGGCGTTGCCAATGCCTTCTTATGTCGGCTA 846
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ATCTAAGATCGGTAACTTCAATAATCCCAAGGCGTTGCCAATGCCTTCTTATGTCGGCTA 827
Query 847 CCACAAGCTCTGATGTCGAAAAATTGAAGAAATTGATTCTGCACAACCCAATCGTTTTGA 906
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 CCACAAGTTCTGATGTCGAAAAATTGAAGAAATTGATTCTGCACAACCCAATCGTTTTGA 887
Query 907 CCTTGACAGAAGATAATGACAAGGAAGAGGCCGTCCCAAGTAATGTTCAGCAGTTTTGGA 966
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 888 CCTTGACAGAAGAGAATGACAAGGATGAGGCCGTCCCAAGTAATGTTCAGCAGTTTTGGA 947
Query 967 TCTCTTGCAGTGCTCAGGATAAACTGCTTCACATTCTTGCTCTCTTGAAGCTAGAGGTTG 1026
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 948 TTTCTTGCAGTGCTCAGGATAAACTGCTTCACATTCTTGCTCTCTTGAAGCTAGAGATTG 1007
Query 1027 TTCAGAAGAAAATTCTGATTTTCATCAATACAATTGACATGGGATTCAGGTTGAAATTAT 1086
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1008 TTCAGAAGAAAATTCTGATATTCATCAATACGATTGACATGGGATTCAGGTTGAAATTAT 1067
Query 1087 TCTTGGAAAAGTTTGGAATCAAGTCTGCAATTTTAAACGGGGAATTGCCTCAGAATTCTC 1146
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1068 TCTTGGAAAAGTTTGGAATTAAGTCTGCAATTTTAAACGGGGAGTTGCCTCAGAATTCTC 1127
Query 1147 GACTTCATATCCTTGAGCAATTCAATGCAGGACTTTTCGATTACTTGATTGCAACGGATG 1206
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1128 GGCTACATATCCTTGAGCAATTCAATGCAGGTCTTTTCGATTACTTGATTGCAACGGATG 1187
Query 1207 ATAATAGCCAGACTAAAAAACAAAAGGAAGAGGCTAAAGGTGAGGCTAACAAGGAGAACA 1266
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1188 ATAATAGCCAGACTAAAAAACAAAAGGAAGAGGCTAAAGGTGAGGAGAACAAGGAGAACA 1247
Query 1267 AGAAAAATAATAAGCGTAGCAAACCAAAGCTAGATGCTGAGTTCGGTGTAGTTAGGGGAA 1326
| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1248 ATAAAAACAATAAGCGTAGCAAACCAAAGCTGGATGCCGAGTTCGGTGTAGTTAGGGGAA 1307
Query 1327 TTGATTTCAAAAAAGTTCACACGGTTATAAACTTTGATATGCCTCAAAGTGTTACTGGAT 1386
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1308 TTGATTTCAAAAAAGTTCACACGGTCATAAACTTTGATATGCCTCAAAGTGTTACTGGAT 1367
Query 1387 ATATCCATCGAATTGGGCGTACAGGGAGAGCATATAGCAGCGGATCTTCCGTTTCTCTTA 1446
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1368 ATATTCATCGAATTGGGCGTACAGGGAGAGCATATAGCAGCGGTTCTTCCGTTTCTCTTG 1427
Query 1447 TTTCTCCTGATGAGATGGAAGGGTTTGAAGATATAAAGTCCTTCTTAGCAAGCGACAAGA 1506
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1428 TTTCTCCTGATGAGATGGAAGGGTTTGAAGATATAAAGTCCTTCTTAGCAAGTGACAAGA 1487
Query 1507 ACAAGGATATTGATATTATCACACCCTTTCCTTTGTTGACCGAAAATGCTGTCGAGTCTC 1566
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1488 ACAAGGATAGTGATATTATCACACCCTTTCCTTTGTTGACCGAAAATGCTGTGGAGTCTC 1547
Query 1567 TTAGATATAGAGCTGAGGATGTGGCAAAGAGTGTTACAAAGATTGCGGTTCGAGAGTCTC 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 TTAGATATAGAGCTGAGGATGTGGCAAAGAGTGTTACAAAGATTGCGGTTCGAGAGTCTC 1607
Query 1627 GAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAAGTTAAAAGCTCATTTTGAAG 1686
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1608 GAGCTCAGGATTTGAGGAATGAGATAATCAACTCCGAAAAGTTAAAAGCTCATTTTGAAG 1667
Query 1687 CTAATCCAAGAGACTTAGATCTGTTGAGACATGACAAGCCTCTGAGTAAGACTGCACCTG 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 CTAATCCAAGAGACTTAGATCTGTTGAGACATGACAAGCCTCTGAGTAAGACTGCACCTG 1727
Query 1747 CACCACATCTAAAGGACATCCCCGAGTATCTAGTGGACGCAAAGACTCAAGAAGCAAGCA 1806
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1728 CACCACATCTAAAGGACATCCCTGAGTATCTAGTGGACCCAAAGACTCAAGAAGCAAGCA 1787
Query 1807 AGATGGTAAAGCTAGCTAGAGCCGCAATGGGCAACACTAGGAGATCTGGTGGAGGCGGTG 1866
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1788 AGATGGTAAAACTAGCTAGAGCCGCAATGGGCAACACTAGGAGATCTGGTGGAGGCAGTG 1847
Query 1867 GTCGCAACAACAAAAACAAGAAACGGTCTAGAAAAGGCAGCGACCCACTCAAAACCTTCA 1926
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1848 GTCGCAACAACAAAAACAAGAAACGGTCCAGAAAAGGCAGCGACCCACTCAAAACCTTCA 1907
Query 1927 ACCCTAATGGGTCTAAGAGAGGA---G----C--CGTTGGCCAGAAG--G-ATGGCAAAG 1974
|||| ||||| |||||||||||| | | ||||||||||||| | |||||| ||
Sbjct 1908 ACCCCAATGGATCTAAGAGAGGACACGGTGGCGGCGTTGGCCAGAAGAAGGATGGCAGAG 1967
Query 1975 ATTCTAGC--T--C--GACCAAAAAACAGAAGACAGTTTAAGTTATTTCGTTTAGCGT-A 2027
|||||||| | | |||||| |||||||||||||||||||||||||||||| || | |
Sbjct 1968 ATTCTAGCGATGGCTCGACCAAGAAACAGAAGACAGTTTAAGTTATTTCGTTTTGC-TCA 2026
Query 2028 AGTGTAACCAAATTTTGACTCGTTATAGTCAATCACACAAAAGAACGGAGACGAGAGCAT 2087
|||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||||
Sbjct 2027 AGTGTAACCAAATTTTGACT-GTTATAATCAGTCACACAAAAGAACGGAGACAAGAGCAA 2085
Query 2088 CAATCTTTGTAGCTCTATTCAT-GTAGCATCAGGAGACAAAGTTTTGTGAGCATATTATT 2146
| |||||| |||||||||| || |||||||||| ||| |||||||||||| | | ||
Sbjct 2086 CCATCTTT-TAGCTCTATT-ATTGTAGCATCAGAAGAGAAAGTTTTGTGA---T-TGAT- 2138
Query 2147 AGCCTTTTGAGGTTTTTATTGAAATAGATTTTTGTAAGCTTATGAAGACGATATCTGCAG 2206
| | || ||||| | || | || | | | | || ||| | | || ||
Sbjct 2139 A---TA--GA--TTTTTGT--AA---GCTTGT-G-A--C----GACGACC-T-T-TGTAG 2175
Query 2207 GGTTCAAAATACTCAAATCCACATGGTTTTGGACCCATTTAGATATTTT-CGAAATGAAT 2265
|||||||||| || | ||||||||||||||||| |||||||||||||| |||| |||||
Sbjct 2176 GGTTCAAAATGTTCTAGTCCACATGGTTTTGGACTCATTTAGATATTTTTCGAATTGAAT 2235
Query 2266 TGGCACATTATATGCTTGCACGTTTTTTGTTC 2297
| ||||| |||||||||||||||||| ||||
Sbjct 2236 CGACACAT-ATATGCTTGCACGTTTTTGGTTC 2266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87531383010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5