BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34930.1
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944405 jgi|Araly1|944405|scaffold_700634.1 1349 0.0
Ahg944406 jgi|Araly1|944406|scaffold_700635.1 1042 0.0
> Ahg944405 jgi|Araly1|944405|scaffold_700634.1
Length=1084
Score = 1349 bits (730), Expect = 0.0
Identities = 938/1039 (90%), Gaps = 12/1039 (1%)
Strand=Plus/Plus
Query 376 GGTCTCTTTTGCAAACGACTCTGCGAGAACTGTTGTAGAAAAAGTGCTAAATCCAACGGT 435
||| |||||||| ||||| |||||||||||||||| |||| ||||| |||||||| ||||
Sbjct 53 GGTATCTTTTGCCAACGATTCTGCGAGAACTGTTGCAGAAGAAGTGATAAATCCAGCGGT 112
Query 436 ATCGTTCATCGATAGCCAGCTCCAGCGGCCACGGGACGTCCTTGTGCAACAACAAATCCT 495
|||| ||||| | | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 113 ATCGATCATCCAAAACCAGCTCCAGCGGCCACGGGACGTCCTTGAGCAACAACAAATCCT 172
Query 496 AGACAATCTCCAAGAATCGAATGGTTCGAATTTCCCTGGGGATGACTACCACTCGCCTGA 555
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||
Sbjct 173 AGACAATCTCCAAGAATCTAATGGTTCGCATTTCCCTGGGGATGACTACCACTCGCCCGA 232
Query 556 CCGGAAGAACTGGATGGCCCATCTCTCTGTGGATAAACTAACCCTTAACAAGATCGTGTG 615
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 233 TCGGAAGAACTGGATGGCGCATCTCTCTGTGGATAAGCTAACCCTTAACAAGATCGTGTG 292
Query 616 GCCAGGAACTCACGACTCAGCCACCAACGGAATTGGGGACCCTTTGGTCACTCGTTGGTT 675
||| ||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct 293 GCCCGGAACGCACGACTCAGCCACCAACGGAATCGGGGACCCTGTGTTCACTCGTTGGTT 352
Query 676 GGGTGAATGTCAAACGCTCTCCATCTTCGACCAGCTAGTTCTTGGCACACGTGTCCTCGA 735
||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 353 GGGTGAATGCCAAACGCTTTCCATCTTTGACCAGCTAGTTCTTGGAACACGTGTCCTCGA 412
Query 736 TATCCGTTTCCAAGAGGATCGTTGTGTCTGCCATGGAGCTCTTTCTTCGTACAACGTTGA 795
||||||| | || || || || ||||||||||||||||||| || ||||||||||||||
Sbjct 413 TATCCGTATACAGGAAGACCGCAGTGTCTGCCATGGAGCTCTGTCGTCGTACAACGTTGA 472
Query 796 TGTCGTCCTCAATGACGTCATCAGATTTGTGTCCGAGACCCAATCTGAGATCATAAT-CT 854
||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||| ||
Sbjct 473 TGTCGTCCTCAATGACGTCGTTAGATTTTTGTCGGAGACCCAATCTGAGATCATAATCCT 532
Query 855 TGGAGATAAGGACCGAGTTTGGAAAGAAAGACCCTTTTGAATTCGAGACTTACTTGGTTG 914
| |||||||||||||||||| ||||||||||||| | | ||||||| ||||||||| |
Sbjct 533 T-GAGATAAGGACCGAGTTTAAAAAGAAAGACCCTATGGGATTCGAGGCTTACTTGGCAG 591
Query 915 ATAA-ATTAGGTCAATTCTTGATACATCAAGACGATAACTTGTTCAACAAGCCGGTATCA 973
| || | |||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 592 ACAAGA-TAGGTCAATTCTTGATACATCAAGACGATAACTTGTTCGACAAACCGATATCA 650
Query 974 GAGATTTTGCCGAAAAGGGTTATTTGCATCTGGAAACCTAGAGAATCTCCGAAGCCGAGC 1033
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||
Sbjct 651 GAGATTTTGCCGAAAAGGGTTATTTGCATCTGGAAACCAAGAGACTCTCAGAAGCCGCGC 710
Query 1034 CGTGGTGGAATTCTCTGGAACTCAGATTATCTAAAAGATAATTGGATCGATACGGATCTT 1093
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 711 CGTGGTGGACTTCTCTGGAACTCAGATTATCTAAAAGATAATTGGATCGATACAGATCTT 770
Query 1094 CCATGGACGAAATTTCAGAGCAATTTGAAGCATCTGAGTGAGCAGCAACCGATATCTTCT 1153
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| |
Sbjct 771 CCATGGACGAAATTTCAGAGCAATTTGAAGCATCTGAGCGAACAGCAACCAATATCTTAT 830
Query 1154 AGGAA-ATTCTTCTACCGGGTTGAGAACACGGTTACGCCGCAAGCAGATAATCCGGTTGT 1212
|| || |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 831 AG-AAGATTCTTTTACCGGGTTGAGAACACGGTTACTCCGCAAGCAGATAATCTGGTTGT 889
Query 1213 GTGGG-TTAAACAGGTTACTGATCGGATCAGAAAACACGCTAGGCTTTTTATATCTCAGT 1271
|||| |||||| ||| |||||||| ||| |||||||||| ||||| |||||||||||||
Sbjct 890 -TGGGGTTAAACCGGTGACTGATCGAATCCGAAAACACGCAAGGCTATTTATATCTCAGT 948
Query 1272 GTGCTTCCAAGGGATATGGAGATAAGTTACAGATTTTGTCCACTGATTTCATTGAAGGAG 1331
||| ||||| ||||| |||||| ||||| || ||| |||| |||||||||||||||||||
Sbjct 949 GTGTTTCCAGGGGATGTGGAGACAAGTTGCAAATTCTGTCGACTGATTTCATTGAAGGAG 1008
Query 1332 ATTTTGTCGATGCCTGCGTCGGACTCACTCACGCAAGAAT-GAAGGGACAGTTTGATAAG 1390
|||| || ||||||||||| ||||||||||| || ||||| ||||||| ||||| | | |
Sbjct 1009 ATTTCGTGGATGCCTGCGTTGGACTCACTCATGCGAGAATCGAAGGGAAAGTTTAACA-G 1067
Query 1391 ATATCTCCAAGTTAGACAA 1409
||||| | | ||| |||||
Sbjct 1068 ATATC-CGA-GTTTGACAA 1084
> Ahg944406 jgi|Araly1|944406|scaffold_700635.1
Length=1001
Score = 1042 bits (564), Expect = 0.0
Identities = 791/899 (88%), Gaps = 21/899 (2%)
Strand=Plus/Plus
Query 501 ATCTCCAAGAAT-CGAATGGTTCGA-ATTTCCCTGGGGATGACTACCACT-CG-CCTGAC 556
||||| || ||| || | ||||| | | |||||||| |||||||||| | || || ||
Sbjct 95 ATCTCGAAAAATCCG-ACGGTTC-ACAATTCCCTGGCGATGACTACC-GTCCGTCC-GAT 150
Query 557 CGGAAGAACTGGATGGCCCATCTCT-CTGTGGATAAACTAACCCTTAACAAGATCGTGTG 615
||||| |||||||||||| ||| | || |||| |||||||| || ||||||||||||||
Sbjct 151 CGGAAAAACTGGATGGCCGGTCT-TACTTTGGAGAAACTAACTCTAAACAAGATCGTGTG 209
Query 616 GCCAGGAACTCACGACTCAGCCACCAACGGAAT-TGGGGA-CCCTTTGGTCACTCGTTGG 673
||||||||| || || |||||||||||| | || | || | ||| || || |||||
Sbjct 210 GCCAGGAACGCATGATTCAGCCACCAAC-G-ATATCGGAATACCTCTGATCTCTCGTCCC 267
Query 674 TTGGGTGAATGTCAAACGCTCTCCATCTTCGACCAGCTAGTTCTTGGCACACGTGTCCTC 733
|||| |||||| ||||||||||| |||| ||| ||||| || || || ||||||||||||
Sbjct 268 TTGGCTGAATGCCAAACGCTCTCTATCTACGAGCAGCTCGTCCTCGGGACACGTGTCCTC 327
Query 734 GATATCCGTTTCCAAGAGGATCGTTGTGTCTGCCA-TGGAGCTCTTTCTTCGTACAACGT 792
||||||||| | ||||||||||| ||||||| ||| ||| | || ||| ||||
Sbjct 328 GATATCCGTGTGCAAGAGGATCGCCAAATCTGCCACGGGA-TTCTGACGTCATACGACGT 386
Query 793 TGATGTCGTCCTCAATGACGTCATCAGATT-TGTGTCCGAGACCCAATCTGAGATCATAA 851
|||||| ||| || ||||||| |||||||| | | || ||||| || || ||||| |||
Sbjct 387 TGATGTGGTCATCGATGACGTTATCAGATTCT-TATCGGAGACTCACTCGGAGATTGTAA 445
Query 852 TCTTGGAGATAAGGACCGAGTTTGGAAAGAAAGACCCTTTTGAATTCGAGACTTACTTGG 911
|| ||||||| ||||| ||||||||| | ||||| ||| || ||||||||||||||||
Sbjct 446 TCCTGGAGATTAGGACTGAGTTTGGACACAAAGATCCTCCGGAGTTCGAGACTTACTTGG 505
Query 912 TTGATAAATTAGGTCAATTCTTGATACATCAAGACGATAACTTGTTCAACAAGCCGGTAT 971
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 506 CAGATAAGTTAGGTCAATTCTTGATACATCAAGATGATAACTTGTTCAACAAGCCGGTTT 565
Query 972 CAGAGATTTTGCCGAAAAGGGTTATTTGCATCTGGAAACCTAGAGAATCTCCGAAGCCGA 1031
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 566 CAGAGATTTTGCCGAAAAGGGTTATTTGCATCTGGAAACCTAGAGAGTCTCCGAAGCCGA 625
Query 1032 GCCGTGGTGGAATTCTCTGGAACTCAGATTATCTAAAAGATAATTGGATCGATACGGATC 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 GCCGTGGTGGAATTCTCTGGAACTCAGATTATCTAAAAGATAATTGGATCGATACGGATC 685
Query 1092 TTCCATGGACGAAATTTCAGAGCAATTTGAAGCATCTGAGTGAGCAGCAACCGATATCTT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TTCCATGGACGAAATTTCAGAGCAATTTGAAGCATCTGAGTGAGCAGCAACCGATATCTT 745
Query 1152 CTAGGAAATTCTTCTACCGGGTTGAGAACACGGTTACGCCGCAAGCAGATAATCCGGTTG 1211
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 746 CTAGAAAATTCTTTTACCGGGTTGAGAACACGGTTACGCCGCAAGCAGATAATCCAGTTG 805
Query 1212 TGTGGGTTAAAC-AGGTTACTGATCGGATCAGAAAACACGCTAGGCTTTTTATATCTCAG 1270
|||||||||||| || | |||||||||||| |||||||||||||||||||||| || |||
Sbjct 806 TGTGGGTTAAACCAG-TGACTGATCGGATCCGAAAACACGCTAGGCTTTTTATTTCCCAG 864
Query 1271 TGTGCTTCCAAGGGATATGGAGATAAGTTACAGATTTTGTCCACTGATTTCATTGAAGGA 1330
|||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 TGTGTTTCCAAAGGATGTGGAGATAAGTTACAGATTTTGTCCACTGATTTCATTGAAGGA 924
Query 1331 GATTTTGTCGATGCCTGCGTCGGACTCACTCACGCAAGAAT-GAAGGGACAGTTTGATA 1388
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 925 GATTTTGTCGATGCCTGCGTCGGACTCACTCACGCAAGAATCGAAGGGAAAGTTTGATA 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5