BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34940.1
Length=2353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944404 jgi|Araly1|944404|scaffold_700633.1 3258 0.0
> Ahg944404 jgi|Araly1|944404|scaffold_700633.1
Length=2038
Score = 3258 bits (1764), Expect = 0.0
Identities = 1949/2040 (96%), Gaps = 6/2040 (0%)
Strand=Plus/Plus
Query 142 GTTTCTTGATTGTTG-TT-TCTCATGGCGGATATTGTGAAACAGATCTTAGTAAGACCGA 199
||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GTTTCTTGACTGTTGTTTCTCTCATGGCGGATATCGTGAAACAGATCTTAGTAAGACCGA 60
Query 200 TTCAATTAGCGGATCAGATAACTAAAGCGTCAGACGAAGCTTACTCATTCCGTCAAGAAT 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCAATTAGCGGATCAGATAACTAAAGCGTCAGACGAAGCTTACTCATTCCGTCAAGAAT 120
Query 260 GTCTAGAGGTCAAAGCCAAAACGGAAAAGCTCGCCGGTCTCCTCCGTCAAGCGGCGCGTG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCTAGAGGTCAAAGCCAAAACGGAAAAGCTCGCCGGTCTCCTCCGTCAAGCGGCGCGTG 180
Query 320 CAAGCAACGATCTCTACGAACGTCCCACTCGCCGTATCATCGACGATACAGAGCAAGTCC 379
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 CAAGCAACGATCTCTACGAACGTCCCACGCGCCGTATCATCGACGATACAGAGCAAGTCC 240
Query 380 TCTTCAAAGCCCTAGCCCTCGTAGAAAAATGCCGCGCCACGGGACTGATGAAACGTGTTT 439
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTTCAAAGCATTAGCCCTCGTCGAAAAATGCCGCGCCACGGGACTGATGAAACGTGTTT 300
Query 440 TCACCATTATTCCCGCGGCTGCGTTTAGGAAAATCACGATGCAGTTAGAGAATTCAATCG 499
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCACCATTATCCCCGCGGCTGCGTTTAGGAAAATCACGATGCAGTTAGAGAATTCAATCG 360
Query 500 GAGACGTTTCTTGGCTCCTACGTGTCTCTGCTTCAGGCGATGACCGTGACGATGAGTATT 559
||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 361 GAGACGTCTCTTGGCTTCTCCGTGTCTCTGCTTCAGGAGATGATCGTGACGATGAGTATT 420
Query 560 TAGGTCTCCCTCCGATCGCTGCAAACGAACCAATCCTCTGTTTGATTTGGGAACAAGTTG 619
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 TAGGTCTCCCTCCCATCGCTGCCAACGAACCAATCCTCTGTTTGATTTGGGAACAAGTTG 480
Query 620 CGATACTGTTCACAGGCTCTCTCGATGATCGATCTGATGCAGCGGCTTCCCTGGTGTCGC 679
| || ||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 481 CAATTCTGTTCACAGGCTCTCTCGATGATCGATCCGATGCAGCGGCTTCGCTCGTGTCGC 540
Query 680 TTGCACGTGACAATGATCGATACGGGAGGTTGATTATTGAAGAAGGTGGTGTACCTTCGT 739
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 541 TTGCACGTGACAATGATCGATACGGGAGGTTGATTATTGAAGAAGGTGGGGTTCCTCCGT 600
Query 740 TATTGAAACTTGCTAAAGAAGGTAAAATGGAAGGTCAAGAAAACGCGGCTCGAGCCATTG 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TATTGAAACTTGCTAAAGAAGGTAAAATGGAAGGTCAAGAAAACGCGGCTCGAGCCATTG 660
Query 800 GGTTATTAGGACGAGATCCAGAGAGTGTTGAACAGATTGTGAACGCAGGTGTGTGTCAAG 859
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGTTATTAGGACGTGATCCAGAGAGTGTTGAACAGATTGTGAACGCAGGTGTGTGTCAAG 720
Query 860 TGTTTGCGAAGATTCTTAAAGAAGGTCATATGAAAGTTCAAACTGTTGTTGCTTGGGCTG 919
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTTTGCAAAGATTCTTAAAGAAGGTCATATGAAAGTTCAAACTGTTGTTGCTTGGGCTG 780
Query 920 TTTCTGAATTAGCCTCTAATCATCCTAAATGTCAAGACCATTTTGCTCAGAACAACATCA 979
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 781 TTTCTGAATTAGCTTCAAATCATCCAAAATGTCAAGACCATTTTGCTCAGAACAACATCA 840
Query 980 TCCGTTTCCTCGTGAGCCATTTAGCTTTTGAGACGGTTCAAGAACATAGCAAATACGCTA 1039
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTCGTTTCCTTGTAAGCCATTTAGCTTTTGAGACGGTTCAAGAACATAGCAAATACGCTA 900
Query 1040 TCGTGAGTAACAAGCAAACATTGTCGTCGATCCATACGGTTGTTATGGCGAGTAATACGA 1099
|||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 901 TCGTGAGTAACAAGCAGACATTGTCTTCGATCCATACGGTTGTGATGGCAAGTAATACGA 960
Query 1100 ATCCGGCGGATAAGAAGGAGAACAATGAGCAAGATGAGACAAAAAGCAATATTTCACATC 1159
||||| ||| |||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 961 ATCCGACGGGTAAGAAGGAGAATAGCGAGCAAGACGAGACAAAAAGCAATATTTCACATC 1020
Query 1160 CTTTGAGTAATCAAACACCGAGCCAGATGCATAGCTTGATTGCTAACACATTGGCAATGA 1219
|| |||||||||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 1021 CTATGAGTAATCAAACACCGAGCCAGATGCATAGCTTGATTACAAACACATTAGCAATGA 1080
Query 1220 AGGGTTCAGGTCCCAGTTCAGGTTCAGGCTCAGGTTCAGGTTCGGGAACTAACAAGAATC 1279
||||||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1081 AGGGTTCGGGTCCGAGTTCAGGTTCGGGTTCAGGTTCGGGTTCGGGAACTAACAAGAATC 1140
Query 1280 AGATAAAACAGAGCAATCAACAGCACCAGAATCATACCAAGGGTGGTTCAAACCCTAGAG 1339
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1141 AGATAAAACAGAGCAACCAACAGCACCAGAATCATACCAAGGGTGGTTCAAACCCGAGAG 1200
Query 1340 GGAACAATCCTACGCATGTTTCATTAATGGGCACAAGCATTAAAGGAAGAGAGTATGAGG 1399
||||||| || || |||||||| |||||||| |||||||| ||||||||||||| |||||
Sbjct 1201 GGAACAACCCGACACATGTTTCTTTAATGGGGACAAGCATAAAAGGAAGAGAGTTTGAGG 1260
Query 1400 ATCCAGCTACTAAAGCTCAGATGAAAGCAATGGCTGCAAGAGCATTGTGGCAACTCTCAA 1459
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1261 ATCCAGCTACTAAAGCTCAGATGAAGGCAATGGCTGCAAGAGCACTGTGGCAACTCTCAA 1320
Query 1460 GAGGGAATCTCCAAATATGTAGAAGCATAACAGAGTCAAGAGCATTGCTCTGTTTCGCGG 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1321 GAGGGAATCTCCAAATATGTAGAAGCATAACAGAGTCAAGAGCATTGCTCTGTTTTGCGG 1380
Query 1520 TTCTGTTAGAGAAAGGAGACGATGAAGTCAAGTCATATTCAGCTTTGGCAATGATGGAAA 1579
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1381 TTCTGTTAGAGAAAGGAGACGATGAAGTCAAGTCATATTCCGCTTTGGCAATGATGGAGA 1440
Query 1580 TCACAGATGTAGCAGAGCAATATCCAGAACTGAGACGTTCAGCCTTT-AAACCAACCTCT 1638
|||||||||| || || || ||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 1441 TCACAGATGTGGCTGAACAGTATCCAGAACTTAGACGTTCAGC-TTTCAAACCAACCTCT 1499
Query 1639 CCTGCTGCAAAAGCTGTAGTAGAACAGTTACTTAAGGTGATCGAAAACGAAATA-CTGGA 1697
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 1500 CCTGCTGCAAAAGCTGTAGTTGAACAGTTACTTAAGGTGATCGAAAACGAAATAAC-GGA 1558
Query 1698 CCTACTAATCCCGTGTATCAAATCAATCGGTAGTCTTTCAAGAACGTTCCGTGCAACGGA 1757
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1559 CCTTCTAATCCCGTGTATCAAATCAATCGGTAGTCTTTCAAGAACATTCCGTGCAACGGA 1618
Query 1758 AACTAGGATCATTGGACCACTCGTGAAGCTTCTTGATGAAAGAGAAGCAGAGATTGCAAT 1817
||| ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct 1619 AACAAGGATCATTGGACCACTTGTGAAGCTTCTAGATGAAAGAGAAGCAGAGGTTGCAAT 1678
Query 1818 GGAAGCCGCAGTAGCGCTTATCAAATTCTCATGTACCGAGAATTTCCTTCGCGATAACCA 1877
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1679 GGAAGCCGCAGTAGCGCTTATCAAATTCTCATGTACCGATAATTTCCTTCGCGATAACCA 1738
Query 1878 CTCTAAAGCGATTATAGCAGCTGGAGGTGCAAAGCATTTGATTCAACTGGTATACTTTGG 1937
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||
Sbjct 1739 CTCTAAAGCGATTATAGCAGCAGGAGGTGCAAAGCATTTGATTCAATTGGTCTACTTTGG 1798
Query 1938 AGAACAAATGGTTCAAGTCCCGGCTTTGATGCTACTTTGTTATATCGCTTTGAATGTACC 1997
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1799 AGAACAAATGGTTCAAGTCCCGGCTTTGATGCTACTTTGTTATATAGCTTTGAATGTACC 1858
Query 1998 GGACAGTGAGACTTTAGCTCAAGAAGAGGTTCTTGTAGTACTTGAATGGTCGACAAAGCA 2057
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1859 GGACAGTGAGGCTTTAGCTCAAGAAGAGGTTCTTGTAGTGCTTGAATGGTCGACAAAGCA 1918
Query 2058 AGCTCATTTGGTTGAAGCACCGACGATTGATGAGATTTTACCAGAAGCAAAGAGTAGATT 2117
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1919 AGCTCATTTGGTGGAAGCACCGACGATTGACGAGATTTTACCAGAAGCAAAGAGTAGATT 1978
Query 2118 GGAGCTTTACCAATCTAGAGGGTCAAGAGGATTTCATTGATATATGACGAAGCTTCACTC 2177
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1979 GGAGCTTTACCAATCTAGAGGGTCAAGAGGATTTCATTGATATATGACAAAGCTTCACTC 2038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88636000115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5