BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34950.1
Length=1991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491162 jgi|Araly1|491162|fgenesh2_kg.7__595__AT4G34950.1 2839 0.0
Ahg931495 jgi|Araly1|931495|scaffold_303952.1 588 6e-167
> Ahg491162 jgi|Araly1|491162|fgenesh2_kg.7__595__AT4G34950.1
Length=1914
Score = 2839 bits (1537), Expect = 0.0
Identities = 1744/1846 (94%), Gaps = 5/1846 (0%)
Strand=Plus/Plus
Query 12 AAAAATAtcttctttctccttcttcttcattcttctcaatatctcctaatgggttttggt 71
||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1 AAAAATATCTTCTTTCTTCTTCTTCTTCATTCTTCTCAATATCTCC-AATGGGGTTTGGT 59
Query 72 acatcttcttcttcatcttcttcCTCAGCTCTGAAATGGCTAGGTTTCGTTACTGCCGTT 131
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 AGATCTTCTTCTTCATCTTCTTCCTCAGCTCTAAAATGGCTAGGTTTCGTTACTGCCGTT 119
Query 132 TGGGTCCAATCCATCTCCGGCAACAATTACACCTTCTCAAATTACTCCGGCGCACTCAAA 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGGTCCAATCCATCTCCGGCAACAATTACACCTTCTCAAATTACTCCGGCGCACTCAAA 179
Query 192 TCCTTAATGAACCTCACTCAGTTAGAACTCAACAGTCTCTCCGTCGCTAAAGACGTCGGA 251
||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct 180 TCCCTAATGAACCTCACTCAGCTAGAACTCAACAGTCTTTCCGTCGCTAAAGACATCGGA 239
Query 252 AAAGCATTCGGAATCCTCGCCGGACTTGCTTCCGACCGTCTTTCAACTCCGGTGATCCTC 311
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 240 AAAGCATTCGGAATCCTTGCCGGGCTTGCTTCCGATCGTCTTTCAACTCCGGTGATCCTT 299
Query 312 CTCATCGGTTCTTTCGAAGGTCTTCTTGGTTATGGTGTACAATGGCTTGTCGTTAGCCGC 371
|||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 300 CTCATCGGTTGTTTCGAAGGTCTTCTCGGTTATGGTGTACAATGGCTTGTCGTAAGCCGC 359
Query 372 ACGATTCAACCTATACCTTATTGGCAGATGTGTGTGTTTCTCTGTATGGGAGGAAACAGT 431
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 ACGATTCAACCTATACCTTATTGGCAGATGTGTGTGTTTCTCTGTATGGGAGGTAACAGT 419
Query 432 ACGACGTGGATGAACACGGCGGTTCTGGTTACTTGTATAAGAAACTTCCGGCGAAATCGT 491
|| |||||||||||||||||||||||||| || |||||| ||||||||||||||||||||
Sbjct 420 ACTACGTGGATGAACACGGCGGTTCTGGTGACGTGTATACGAAACTTCCGGCGAAATCGT 479
Query 492 GGTCCTGTTTCAGGGATTCTTAAAGGATACGTTGGTTTAAGTACTGCGATTTTCACGGAT 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGTCCTGTTTCAGGGATTCTTAAAGGATACGTTGGTTTAAGTACTGCGATTTTCACGGAT 539
Query 552 CTATGTAATGCTCTGTTTTCCTCTGACCCAGCTTCGTTTCTTGTCCTCCTCTCCGTCGTG 611
|| || | |||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 540 CTCTGCACTGCTCTGTTTTCCTCTGACCCAGCTTCGTTTCTTATTCTTCTCTCCGTCGTG 599
Query 612 CCTTTTGCCGTTTGTCTCACGGCGGTTTTCTTCCTCCGTGAAATCCCTCCGTCTACTACC 671
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCTTTCGCTGTTTGTCTCACGGCGGTTTTCTTCCTCCGTGAAATCCCTCCGTCTACTACC 659
Query 672 TTCGCCGAGGATAACGAAGAGTCTAAATACTTTGCTGTGTTTAACATCGTTGCGGTTGTT 731
| || ||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 660 TCCGACGAGGATAACGAAGAGTCTAAATACTTCGCCGTGTTTAACATCGTTGCGGTTGTT 719
Query 732 GTTGCTGTGTACCTTCAGTCTTACGACATCATCGGAATCAAAACAGGAGCTTTCTCAATC 791
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 720 GTTGCTGTGTACCTTCAGTCTTACGACATCATCGGAATCAAAACCGGAGCTTTCTCTATC 779
Query 792 GCATTCGCTTCCATACTTCTCATACTCTTAGCCTCTCCTGTCGCTGTACCTTTCCACGCT 851
|| |||||||||||||||||||| |||||||| |||||| ||||||| || ||||| ||
Sbjct 780 GCGTTCGCTTCCATACTTCTCATTCTCTTAGCTTCTCCTATCGCTGTCCCATTCCATGCC 839
Query 852 TTTATCCGTAGCAAAGTTCATGATGAGCAAGACGTAGAAGGACGAATAGATGAACCTTTA 911
|| || || ||||||| ||| ||||| || ||||||||||||||||| || ||||| |||
Sbjct 840 TTCATTCGGAGCAAAGATCACGATGAACAGGACGTAGAAGGACGAATCGACGAACCGTTA 899
Query 912 CTAAGATCAGGATCTGAGATTGAAGTGGAGGAAACAATCGTAGGTGCTGCAGCGGCGGCG 971
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTGAGATCAGGATCCGAGATTGAAGTGGAGGAAACAATCGTAGGTGCTGCAGCGGCGGCG 959
Query 972 GATAACGAATTGCCACCGTCTCTTAAGCCGTTAAGTAACGAGGAGGAAGAGAATCACGGA 1031
||||| |||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||
Sbjct 960 GATAATGAATTGCCACCGTCGCTTGAGCCGTTAAATAACGAGGAGGTAGAGAATCACGGA 1019
Query 1032 ACTATAGTGACGACGGAGAAGAAAAGACCGGTTCTTGGAGAAGAACACACCATAATGGAA 1091
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AATGTGGTGACGACGGAGAAGAAAAGACCGGTTCTTGGAGAAGAACACACCATAATGGAA 1079
Query 1092 GCTATGTTGACCGTTGACTTTTGGGTGTTGTTCGTGTCGTTCTTGTGTGGAGTAGGAACT 1151
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1080 GCGATGTTGACCGTTGACTTTTGGGTGTTGTTTGTGTCGTTCTTGTGTGGAGTAGGAACT 1139
Query 1152 GGTTTAGCAGTTATGAACAATATGGGTCAGATCGGGCTTGCGCTTGGTTACACTGATGTC 1211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 GGTTTAGCAGTTATGAACAATATGGGTCAGATCGGGCTTGCGCTTGGTTACACTGACGTC 1199
Query 1212 TCCATTTTTGTCTCCATGACTAGCATTTGGGGATTCTTTGGTCGGATTCTCTCCGGTACT 1271
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCCATTTTTGTATCAATGACTAGCATTTGGGGATTCTTTGGTCGGATTCTCTCCGGTACT 1259
Query 1272 ATCTCCGAGCACTTCATCAAGAAAGCTGGAACACCAAGACCATTATGGAATGCAGCAGCT 1331
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ATCTCCGAGCACTTCATCAAAAAAGCTGGAACACCAAGACCATTATGGAATGCAGCAGCT 1319
Query 1332 CAAATCATTATGGCCGTGGGATATCTACTGATGGCTTTAGCCTTGCCCGGTTCACTCTAT 1391
|| ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1320 CAGATCATTATGGCTGTCGGATATCTACTGATGGCTTTAGCCATGCCCGGTTCACTCTAC 1379
Query 1392 ATTGGTTCAATGGTGGTTGGGGTATGCTATGGAGTTCGG-TTAGCGATAACCGTACCAAC 1450
||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||
Sbjct 1380 ATTGGTTCAATGGTGGTTGGGGTATGCTATGGAGT-CAGATTAGCCATAACCGTACCAAC 1438
Query 1451 AGCATCAGAACTCTTCGGTCTCAAATACTATGGACTCATCTACAACATCCTTATACTTAA 1510
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1439 AGCATCAGAACTCTTCGGTCTCAAATACTATGGACTCATCTACAACATCCTTGTACTTAA 1498
Query 1511 TATGCCTCTAGGATCGTTCCTCTTCTCGGGTCTACTCGCGGGTTTACTCTACGATGCTGA 1570
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1499 TTTGCCTCTAGGATCGTTCCTCTTCTCGGGTCTACTTGCGGGTTTACTCTACGATGCTGA 1558
Query 1571 AGCCACACCTACTCCTGGTGGAGGCAATACGTGTGTAGGAGCTCATTGTTTCCGTATCGT 1630
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1559 AGCCACACCAACTCCTGGTGGAGGCAATACGTGTGTAGGAGCTCATTGTTTCCGTATGGT 1618
Query 1631 CTTCATTGTAATGGCGTTTGCTTCTATCATTGGGGTCGGTCTTGACCTTTTGCTTGCGTA 1690
||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||
Sbjct 1619 CTTCATTGTAATGGCGTTTACTTCCATTATTGGAGTCGGTCTTGACCTTTTGCTTGCGTT 1678
Query 1691 TAGAACCAAGGGGATCTATGCGAAGATTCATGCGAGCAAGAAGACTAAGAAATCTGGTGG 1750
|||||| ||||| |||||||||||||||||||||||||||||| ||| |||||| |||
Sbjct 1679 TAGAACAAAGGGAATCTATGCGAAGATTCATGCGAGCAAGAAGGGTAATAAATCTACTGG 1738
Query 1751 TAATCTTCGATGAGAGTGGATTTTGCTTTTGGTGAAAATCATTTTTTGGGTATCTTTAGT 1810
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1739 TAATCTTCGATGAGAGTGGATTT-GCTTTTGGTGACAATCATTTTTTGGGTATCTTTAGT 1797
Query 1811 TCTATAGTAATATGTAGATTTCTTGTGTCTATTTTCGAAAGAATTT 1856
|||||||||| | |||||||| |||||||||||||| |||| ||||
Sbjct 1798 TCTATAGTAA-ACGTAGATTTGTTGTGTCTATTTTCCAAAGCATTT 1842
> Ahg931495 jgi|Araly1|931495|scaffold_303952.1
Length=1678
Score = 588 bits (318), Expect = 6e-167
Identities = 630/781 (81%), Gaps = 20/781 (3%)
Strand=Plus/Plus
Query 87 tcttcttcCTCAGC-TCTGAAATGGCTAGG-TTTCGTTACTGCCGTTTGGGTCCAATCCA 144
|||||||| || || | |||||||||| || ||| || || || |||||||| ||| |||
Sbjct 42 TCTTCTTCTTCTGCAT-TGAAATGGCTTGGATTT-GTAACGGCTGTTTGGGTTCAAGCCA 99
Query 145 TCTCCGGCAACAATTACACCTTCTCAAATTACTCCGGCGCACTCAAATCCT-TAATGAAC 203
||||||||||||| ||||| || ||||| |||||||| || || || | || | |||||
Sbjct 100 TCTCCGGCAACAACTACACTTTTTCAAACTACTCCGGTGCTCTTAAGT-CTCTCATGAAT 158
Query 204 CTC-ACTCAGTTAGAACTCAACAGTCTCTCCGTCGCTAAAGACGTCGGAAAAGCATTCGG 262
||| || ||| | || ||||||| ||||| |||||||||||||| |||||||| || ||
Sbjct 159 CTCAAC-CAGCTCGAGCTCAACAACCTCTCTGTCGCTAAAGACGTTGGAAAAGCCTTTGG 217
Query 263 AATCCTCGCCGGACTTGCTTCCGACCGTCTTTCAACTCCGGTGATCCTCCTCATCGGTTC 322
|||||||| || ||||| || ||||||||| | ||||| || ||||| || || ||||
Sbjct 218 GATCCTCGCTGGCCTTGCCTCTGACCGTCTTCCTACTCCTGTCATCCTTCTTATTGGTTG 277
Query 323 TTTCGAAGGTCTTCTTGGTTATGGTGTACAATGGCTTGTCGTTAGCCGCACGATTCAACC 382
||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 278 TTTTGAAGGACTTCTCGGTTATGGTGTACAATGGCTTGTTGTTAGCCGCACCATCCAACC 337
Query 383 TATACCTTATTGGCAGATGTGTGTGTTTCTCTGTATGGGAGGAAACAGTACGACGTGGAT 442
|| |||||||||||||||||| | || |||||||||||||| ||||| || ||||||||
Sbjct 338 AATCCCTTATTGGCAGATGTGTATATTCCTCTGTATGGGAGGGAACAGCACAACGTGGAT 397
Query 443 GAACACGGCGGTTCTGGTTACTTGTATAAGAAACTTCCGGCGAAATCGTGGTCCTGTTTC 502
||||||||||||| | || ||||| ||| | || ||||| ||||| ||||||||||| ||
Sbjct 398 GAACACGGCGGTTTTAGTGACTTGCATACGCAATTTCCGACGAAACCGTGGTCCTGTCTC 457
Query 503 AGGGATTCTT-AAAGGATACGTTGGTTTAAGTACTGCGATTTTCACGGATCTATGTAATG 561
|||| |||| |||||||| || || |||| || || || ||||| || ||||| | ||
Sbjct 458 CGGGA-TCTTGAAAGGATATGTCGGCCTAAGCACAGCTATATTCACCGACCTATGCACTG 516
Query 562 CTCTGTTTTC-CTCTGACCCAGCTTCGTTTCTT-GTCCTCCTCTCCGTCGTGCCTTTTGC 619
||||||| || | || || || |||||| || || | ||| | ||| | ||||| ||
Sbjct 517 CTCTGTTCTCAAAC-GATCCGGCGTCGTTT-TTGGTTTTGCTCGCAGTCATCCCTTTCGC 574
Query 620 CGTTTGTCTCACGGCGGTTTTCTTCCTCCGTGAAATCCCTCCGT-CTACTACCT-TCGCC 677
|| ||||||||||||||||||||||||||||| ||||| || | || || || ||||
Sbjct 575 GGTCTGTCTCACGGCGGTTTTCTTCCTCCGTGAGATCCCACC-TGCTTCT-TCTGCCGCC 632
Query 678 GAGGATAACGAAGAGTCTAAATACTTTGCTGTGTTTAACATCGTTGCGGTTGTTGTTGCT 737
||||| ||||||||| || |||||| || | || ||||| || || || ||||| ||
Sbjct 633 GAGGAGAACGAAGAGACTCGCTACTTTACTATATTCAACATTGTGGCCGTCGTTGTCGCC 692
Query 738 GTGTACCTTCAGTCTTACGACATCATCGGAATCAAAACAGGAGCT-TTCTCAATCGCATT 796
||||| |||||||||||||||||||||||||||||||| |||| | ||||| | || ||
Sbjct 693 GTGTATCTTCAGTCTTACGACATCATCGGAATCAAAACTGGAG-TGTTCTCTGTTGCTTT 751
Query 797 CGCTTCCATACTTCTCATACTCTTAGCCTCTCCTGTCGCTGTACCTTTCCACGCTTTTAT 856
||| |||||||||||| | ||||| || ||||| |||| | ||||||||| |||| ||
Sbjct 752 CGCCTCCATACTTCTCTTCCTCTTGGCTTCTCCAATCGCCATTCCTTTCCACTCTTTCAT 811
Query 857 C 857
|
Sbjct 812 C 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74847331425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5