BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34950.1 Length=1991 Score E Sequences producing significant alignments: (Bits) Value Ahg491162 jgi|Araly1|491162|fgenesh2_kg.7__595__AT4G34950.1 2839 0.0 Ahg931495 jgi|Araly1|931495|scaffold_303952.1 588 6e-167 > Ahg491162 jgi|Araly1|491162|fgenesh2_kg.7__595__AT4G34950.1 Length=1914 Score = 2839 bits (1537), Expect = 0.0 Identities = 1744/1846 (94%), Gaps = 5/1846 (0%) Strand=Plus/Plus Query 12 AAAAATAtcttctttctccttcttcttcattcttctcaatatctcctaatgggttttggt 71 ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| Sbjct 1 AAAAATATCTTCTTTCTTCTTCTTCTTCATTCTTCTCAATATCTCC-AATGGGGTTTGGT 59 Query 72 acatcttcttcttcatcttcttcCTCAGCTCTGAAATGGCTAGGTTTCGTTACTGCCGTT 131 | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 60 AGATCTTCTTCTTCATCTTCTTCCTCAGCTCTAAAATGGCTAGGTTTCGTTACTGCCGTT 119 Query 132 TGGGTCCAATCCATCTCCGGCAACAATTACACCTTCTCAAATTACTCCGGCGCACTCAAA 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TGGGTCCAATCCATCTCCGGCAACAATTACACCTTCTCAAATTACTCCGGCGCACTCAAA 179 Query 192 TCCTTAATGAACCTCACTCAGTTAGAACTCAACAGTCTCTCCGTCGCTAAAGACGTCGGA 251 ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| Sbjct 180 TCCCTAATGAACCTCACTCAGCTAGAACTCAACAGTCTTTCCGTCGCTAAAGACATCGGA 239 Query 252 AAAGCATTCGGAATCCTCGCCGGACTTGCTTCCGACCGTCTTTCAACTCCGGTGATCCTC 311 ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| Sbjct 240 AAAGCATTCGGAATCCTTGCCGGGCTTGCTTCCGATCGTCTTTCAACTCCGGTGATCCTT 299 Query 312 CTCATCGGTTCTTTCGAAGGTCTTCTTGGTTATGGTGTACAATGGCTTGTCGTTAGCCGC 371 |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 300 CTCATCGGTTGTTTCGAAGGTCTTCTCGGTTATGGTGTACAATGGCTTGTCGTAAGCCGC 359 Query 372 ACGATTCAACCTATACCTTATTGGCAGATGTGTGTGTTTCTCTGTATGGGAGGAAACAGT 431 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 360 ACGATTCAACCTATACCTTATTGGCAGATGTGTGTGTTTCTCTGTATGGGAGGTAACAGT 419 Query 432 ACGACGTGGATGAACACGGCGGTTCTGGTTACTTGTATAAGAAACTTCCGGCGAAATCGT 491 || |||||||||||||||||||||||||| || |||||| |||||||||||||||||||| Sbjct 420 ACTACGTGGATGAACACGGCGGTTCTGGTGACGTGTATACGAAACTTCCGGCGAAATCGT 479 Query 492 GGTCCTGTTTCAGGGATTCTTAAAGGATACGTTGGTTTAAGTACTGCGATTTTCACGGAT 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGTCCTGTTTCAGGGATTCTTAAAGGATACGTTGGTTTAAGTACTGCGATTTTCACGGAT 539 Query 552 CTATGTAATGCTCTGTTTTCCTCTGACCCAGCTTCGTTTCTTGTCCTCCTCTCCGTCGTG 611 || || | |||||||||||||||||||||||||||||||||| | || |||||||||||| Sbjct 540 CTCTGCACTGCTCTGTTTTCCTCTGACCCAGCTTCGTTTCTTATTCTTCTCTCCGTCGTG 599 Query 612 CCTTTTGCCGTTTGTCTCACGGCGGTTTTCTTCCTCCGTGAAATCCCTCCGTCTACTACC 671 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CCTTTCGCTGTTTGTCTCACGGCGGTTTTCTTCCTCCGTGAAATCCCTCCGTCTACTACC 659 Query 672 TTCGCCGAGGATAACGAAGAGTCTAAATACTTTGCTGTGTTTAACATCGTTGCGGTTGTT 731 | || ||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 660 TCCGACGAGGATAACGAAGAGTCTAAATACTTCGCCGTGTTTAACATCGTTGCGGTTGTT 719 Query 732 GTTGCTGTGTACCTTCAGTCTTACGACATCATCGGAATCAAAACAGGAGCTTTCTCAATC 791 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 720 GTTGCTGTGTACCTTCAGTCTTACGACATCATCGGAATCAAAACCGGAGCTTTCTCTATC 779 Query 792 GCATTCGCTTCCATACTTCTCATACTCTTAGCCTCTCCTGTCGCTGTACCTTTCCACGCT 851 || |||||||||||||||||||| |||||||| |||||| ||||||| || ||||| || Sbjct 780 GCGTTCGCTTCCATACTTCTCATTCTCTTAGCTTCTCCTATCGCTGTCCCATTCCATGCC 839 Query 852 TTTATCCGTAGCAAAGTTCATGATGAGCAAGACGTAGAAGGACGAATAGATGAACCTTTA 911 || || || ||||||| ||| ||||| || ||||||||||||||||| || ||||| ||| Sbjct 840 TTCATTCGGAGCAAAGATCACGATGAACAGGACGTAGAAGGACGAATCGACGAACCGTTA 899 Query 912 CTAAGATCAGGATCTGAGATTGAAGTGGAGGAAACAATCGTAGGTGCTGCAGCGGCGGCG 971 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 CTGAGATCAGGATCCGAGATTGAAGTGGAGGAAACAATCGTAGGTGCTGCAGCGGCGGCG 959 Query 972 GATAACGAATTGCCACCGTCTCTTAAGCCGTTAAGTAACGAGGAGGAAGAGAATCACGGA 1031 ||||| |||||||||||||| ||| ||||||||| ||||||||||| ||||||||||||| Sbjct 960 GATAATGAATTGCCACCGTCGCTTGAGCCGTTAAATAACGAGGAGGTAGAGAATCACGGA 1019 Query 1032 ACTATAGTGACGACGGAGAAGAAAAGACCGGTTCTTGGAGAAGAACACACCATAATGGAA 1091 | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 AATGTGGTGACGACGGAGAAGAAAAGACCGGTTCTTGGAGAAGAACACACCATAATGGAA 1079 Query 1092 GCTATGTTGACCGTTGACTTTTGGGTGTTGTTCGTGTCGTTCTTGTGTGGAGTAGGAACT 1151 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1080 GCGATGTTGACCGTTGACTTTTGGGTGTTGTTTGTGTCGTTCTTGTGTGGAGTAGGAACT 1139 Query 1152 GGTTTAGCAGTTATGAACAATATGGGTCAGATCGGGCTTGCGCTTGGTTACACTGATGTC 1211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1140 GGTTTAGCAGTTATGAACAATATGGGTCAGATCGGGCTTGCGCTTGGTTACACTGACGTC 1199 Query 1212 TCCATTTTTGTCTCCATGACTAGCATTTGGGGATTCTTTGGTCGGATTCTCTCCGGTACT 1271 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TCCATTTTTGTATCAATGACTAGCATTTGGGGATTCTTTGGTCGGATTCTCTCCGGTACT 1259 Query 1272 ATCTCCGAGCACTTCATCAAGAAAGCTGGAACACCAAGACCATTATGGAATGCAGCAGCT 1331 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1260 ATCTCCGAGCACTTCATCAAAAAAGCTGGAACACCAAGACCATTATGGAATGCAGCAGCT 1319 Query 1332 CAAATCATTATGGCCGTGGGATATCTACTGATGGCTTTAGCCTTGCCCGGTTCACTCTAT 1391 || ||||||||||| || |||||||||||||||||||||||| |||||||||||||||| Sbjct 1320 CAGATCATTATGGCTGTCGGATATCTACTGATGGCTTTAGCCATGCCCGGTTCACTCTAC 1379 Query 1392 ATTGGTTCAATGGTGGTTGGGGTATGCTATGGAGTTCGG-TTAGCGATAACCGTACCAAC 1450 ||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||| Sbjct 1380 ATTGGTTCAATGGTGGTTGGGGTATGCTATGGAGT-CAGATTAGCCATAACCGTACCAAC 1438 Query 1451 AGCATCAGAACTCTTCGGTCTCAAATACTATGGACTCATCTACAACATCCTTATACTTAA 1510 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1439 AGCATCAGAACTCTTCGGTCTCAAATACTATGGACTCATCTACAACATCCTTGTACTTAA 1498 Query 1511 TATGCCTCTAGGATCGTTCCTCTTCTCGGGTCTACTCGCGGGTTTACTCTACGATGCTGA 1570 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1499 TTTGCCTCTAGGATCGTTCCTCTTCTCGGGTCTACTTGCGGGTTTACTCTACGATGCTGA 1558 Query 1571 AGCCACACCTACTCCTGGTGGAGGCAATACGTGTGTAGGAGCTCATTGTTTCCGTATCGT 1630 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1559 AGCCACACCAACTCCTGGTGGAGGCAATACGTGTGTAGGAGCTCATTGTTTCCGTATGGT 1618 Query 1631 CTTCATTGTAATGGCGTTTGCTTCTATCATTGGGGTCGGTCTTGACCTTTTGCTTGCGTA 1690 ||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||||| Sbjct 1619 CTTCATTGTAATGGCGTTTACTTCCATTATTGGAGTCGGTCTTGACCTTTTGCTTGCGTT 1678 Query 1691 TAGAACCAAGGGGATCTATGCGAAGATTCATGCGAGCAAGAAGACTAAGAAATCTGGTGG 1750 |||||| ||||| |||||||||||||||||||||||||||||| ||| |||||| ||| Sbjct 1679 TAGAACAAAGGGAATCTATGCGAAGATTCATGCGAGCAAGAAGGGTAATAAATCTACTGG 1738 Query 1751 TAATCTTCGATGAGAGTGGATTTTGCTTTTGGTGAAAATCATTTTTTGGGTATCTTTAGT 1810 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1739 TAATCTTCGATGAGAGTGGATTT-GCTTTTGGTGACAATCATTTTTTGGGTATCTTTAGT 1797 Query 1811 TCTATAGTAATATGTAGATTTCTTGTGTCTATTTTCGAAAGAATTT 1856 |||||||||| | |||||||| |||||||||||||| |||| |||| Sbjct 1798 TCTATAGTAA-ACGTAGATTTGTTGTGTCTATTTTCCAAAGCATTT 1842 > Ahg931495 jgi|Araly1|931495|scaffold_303952.1 Length=1678 Score = 588 bits (318), Expect = 6e-167 Identities = 630/781 (81%), Gaps = 20/781 (3%) Strand=Plus/Plus Query 87 tcttcttcCTCAGC-TCTGAAATGGCTAGG-TTTCGTTACTGCCGTTTGGGTCCAATCCA 144 |||||||| || || | |||||||||| || ||| || || || |||||||| ||| ||| Sbjct 42 TCTTCTTCTTCTGCAT-TGAAATGGCTTGGATTT-GTAACGGCTGTTTGGGTTCAAGCCA 99 Query 145 TCTCCGGCAACAATTACACCTTCTCAAATTACTCCGGCGCACTCAAATCCT-TAATGAAC 203 ||||||||||||| ||||| || ||||| |||||||| || || || | || | ||||| Sbjct 100 TCTCCGGCAACAACTACACTTTTTCAAACTACTCCGGTGCTCTTAAGT-CTCTCATGAAT 158 Query 204 CTC-ACTCAGTTAGAACTCAACAGTCTCTCCGTCGCTAAAGACGTCGGAAAAGCATTCGG 262 ||| || ||| | || ||||||| ||||| |||||||||||||| |||||||| || || Sbjct 159 CTCAAC-CAGCTCGAGCTCAACAACCTCTCTGTCGCTAAAGACGTTGGAAAAGCCTTTGG 217 Query 263 AATCCTCGCCGGACTTGCTTCCGACCGTCTTTCAACTCCGGTGATCCTCCTCATCGGTTC 322 |||||||| || ||||| || ||||||||| | ||||| || ||||| || || |||| Sbjct 218 GATCCTCGCTGGCCTTGCCTCTGACCGTCTTCCTACTCCTGTCATCCTTCTTATTGGTTG 277 Query 323 TTTCGAAGGTCTTCTTGGTTATGGTGTACAATGGCTTGTCGTTAGCCGCACGATTCAACC 382 ||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 278 TTTTGAAGGACTTCTCGGTTATGGTGTACAATGGCTTGTTGTTAGCCGCACCATCCAACC 337 Query 383 TATACCTTATTGGCAGATGTGTGTGTTTCTCTGTATGGGAGGAAACAGTACGACGTGGAT 442 || |||||||||||||||||| | || |||||||||||||| ||||| || |||||||| Sbjct 338 AATCCCTTATTGGCAGATGTGTATATTCCTCTGTATGGGAGGGAACAGCACAACGTGGAT 397 Query 443 GAACACGGCGGTTCTGGTTACTTGTATAAGAAACTTCCGGCGAAATCGTGGTCCTGTTTC 502 ||||||||||||| | || ||||| ||| | || ||||| ||||| ||||||||||| || Sbjct 398 GAACACGGCGGTTTTAGTGACTTGCATACGCAATTTCCGACGAAACCGTGGTCCTGTCTC 457 Query 503 AGGGATTCTT-AAAGGATACGTTGGTTTAAGTACTGCGATTTTCACGGATCTATGTAATG 561 |||| |||| |||||||| || || |||| || || || ||||| || ||||| | || Sbjct 458 CGGGA-TCTTGAAAGGATATGTCGGCCTAAGCACAGCTATATTCACCGACCTATGCACTG 516 Query 562 CTCTGTTTTC-CTCTGACCCAGCTTCGTTTCTT-GTCCTCCTCTCCGTCGTGCCTTTTGC 619 ||||||| || | || || || |||||| || || | ||| | ||| | ||||| || Sbjct 517 CTCTGTTCTCAAAC-GATCCGGCGTCGTTT-TTGGTTTTGCTCGCAGTCATCCCTTTCGC 574 Query 620 CGTTTGTCTCACGGCGGTTTTCTTCCTCCGTGAAATCCCTCCGT-CTACTACCT-TCGCC 677 || ||||||||||||||||||||||||||||| ||||| || | || || || |||| Sbjct 575 GGTCTGTCTCACGGCGGTTTTCTTCCTCCGTGAGATCCCACC-TGCTTCT-TCTGCCGCC 632 Query 678 GAGGATAACGAAGAGTCTAAATACTTTGCTGTGTTTAACATCGTTGCGGTTGTTGTTGCT 737 ||||| ||||||||| || |||||| || | || ||||| || || || ||||| || Sbjct 633 GAGGAGAACGAAGAGACTCGCTACTTTACTATATTCAACATTGTGGCCGTCGTTGTCGCC 692 Query 738 GTGTACCTTCAGTCTTACGACATCATCGGAATCAAAACAGGAGCT-TTCTCAATCGCATT 796 ||||| |||||||||||||||||||||||||||||||| |||| | ||||| | || || Sbjct 693 GTGTATCTTCAGTCTTACGACATCATCGGAATCAAAACTGGAG-TGTTCTCTGTTGCTTT 751 Query 797 CGCTTCCATACTTCTCATACTCTTAGCCTCTCCTGTCGCTGTACCTTTCCACGCTTTTAT 856 ||| |||||||||||| | ||||| || ||||| |||| | ||||||||| |||| || Sbjct 752 CGCCTCCATACTTCTCTTCCTCTTGGCTTCTCCAATCGCCATTCCTTTCCACTCTTTCAT 811 Query 857 C 857 | Sbjct 812 C 812 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74847331425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5