BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34960.1
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491161 jgi|Araly1|491161|fgenesh2_kg.7__594__AT4G34960.1 1677 0.0
> Ahg491161 jgi|Araly1|491161|fgenesh2_kg.7__594__AT4G34960.1
Length=1150
Score = 1677 bits (908), Expect = 0.0
Identities = 1099/1184 (93%), Gaps = 41/1184 (3%)
Strand=Plus/Plus
Query 2 CTGAAAAAACACACTGCAATTGAGATCGATTTCGACTGTAAGTGAACTTTGATTGCCGCG 61
||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1 CTGAAGAAACACACTGCAATTGAGATCGATTTCGACTGTGAGTTAACTTTGATT------ 54
Query 62 AAGATTACTCAAATCGCCGGACACAAGTTTTTCAGTGAATTCCATTGGCATAGAACTCga 121
| | |||| || |||||| |||||||||||||| ||| |||||||||| ||
Sbjct 55 --G------C---TCGCTGGTCACAAGCTTTTCAGTGAATTCGATT-GCATAGAACTAGA 102
Query 122 gagaaagagacacagagagagagagagaTCTAACAAGAGTCAAAGTTTCTGACTTTTTCG 181
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 103 GAGAAAGAGACACAGAGAGAGAGAGAGATCTAACACGAGTCGAAGTTTCTGACTTTTTCC 162
Query 182 CATTC--TTTTTGAGATCGAGTTCT-GTTTTTGTTGGCGTGTGAGATGAATTCTTaagaa 238
||||| |||||||||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct 163 CATTCTTTTTTTGAGATCGAGTTCTGGTGTTTGTTGGCGTGTGAGATGAATTCTTAACAA 222
Query 239 ggaagaagaagaagaaggaaagaTGCGTAGAGAGATCTCGTTTTTGCTACAGCCCAGGTG 298
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 -G--GAAGAAGAAGAACGAAAGATGCGTAGAGAGATCTCGTTTTTGCTACAGCCCAGGTG 279
Query 299 TCTTCTTCTTCTCGTTGCCCTAACGATTTTCCTCGTCTTCGCGCTCTTCAACACCGGAAA 358
||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 280 TCTTCTTCTCCTCGTTGTCCTAACGATTTTCCTCGTCTTCGCGCTCTTCAACTCCGGAAA 339
Query 359 AGATGAGGAGAAGCAAGTAATTGAAGATCATGAAATCACCAACAGGGTTTTTCTCGATGT 418
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 340 AGATGAGGAGAAGCAAGTAATCGAAGATCACGAAATCACCAACAGGGTTTTTCTCGATGT 399
Query 419 TGATATTGATGGCCAACGCTTAGGCAGGATTGTTATCGGACTATATGGCACTGTTGTACC 478
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 400 TGATATTGACGGCCAACGCTTAGGCAGGATCGTTATCGGACTATATGGCACTGTTGTACC 459
Query 479 CAAAACTGTAGAAAATTTCAGGGCTTTATGCACAGGGGAGAAGGGTAAAACCTCAAGCGG 538
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 460 CAAAACTGTAGAAAATTTCAGGGCTTTATGCACAGGAGAGAAGGGGAAGACCTCAAGCGG 519
Query 539 AAAGCCTTTACATTATAAGGGAACACCATTTCATCGTATAATATCTGGATTTGTAATCCA 598
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 520 AAAGCCTTTACATTATAAGGGAACACCGTTTCATCGTATAATATCTGGATTTGTAATCCA 579
Query 599 AGGAGGAGACATTATCCATGGTGATGGAAAAAGTAGTGACTCAATCTATGGTGGAACCTT 658
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 580 AGGAGGAGACATTATCCATGGTGATGGAAAAAGTAGTGAGTCAATCTATGGTGGTACCTT 639
Query 659 TCCTGACGAAAATTTCAAGATACAGCATTCACACGCAGGTATGGTAGCAATGGCTAATAC 718
|||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||
Sbjct 640 TCCTGACGAAAATTTCAAGATAAAGCATTCACACGCAGGTGTTGTAGCGATGGCTAATAC 699
Query 719 AGGACCGGATTCTAATGGCTCGCAGTTCTTTATCACTACTGTTAAGGCTAGCTGGTTGGA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 AGGACCGGATTCTAATGGCTCGCAGTTCTTTATCACTACTGTTAAGGCTAGCTGGTTGGA 759
Query 779 AGGAGAACATGTGGTGTTGGGAAAGGTGATACAAGGAATGGACAATGTATTCGCCATTGA 838
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 760 AGGAGAACATGTGGTGTTTGGAAAGGTAATACAAGGAATGGACAATGTATTCGCCATTGA 819
Query 839 AGGTGGAGCTGGAACTTACAGTGGCAAACCCAGGAAGAAAGTTGTGATTGCTGATTCTGG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 AGGTGGAGCTGGAACTTACAGTGGCAAACCCAGGAAGAAAGTTGTGATTGCTGATTCTGG 879
Query 899 AGAGATCCCTAAAGACAAATGGGATGAAGAGAGATGACAAAGACAAACCTAAGATACACA 958
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 880 AGAGATCCCTAAAGACAAATGGGATGAAGAGAGATGACCAAGACAA-CCTAAGATACACA 938
Query 959 GCACTACGACAAATCTGGTTCTGTTCCTGTGAGATTCT--GTCTCTGTATTTTCTTTCTA 1016
|||||| | || ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 939 TCACTAC-A-AA-TCTGGTTCTGTTCCTGTGAGATTCTCTGTCTCTGTTTTTTCTTTCTA 995
Query 1017 TTTATAGTTTTGCACATGTGATGATCTGAATTCTGAACGCAATGTCACTGTAGTTAGTGT 1076
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 996 TTTATAGTTTTGCACATGTGATGATCTGAATTCTGAACACAATGCCAATGTAGTTAGTGT 1055
Query 1077 TTAAAGCTGGGCCTGGAAGCATCTGTAGCTTTTCACTTGAG--GTTTTTCTAGACTTTAT 1134
|||||| | |||||||||||||||||||||| | |||||||||||||||||
Sbjct 1056 TTAAAG--G-------AAGCATCTGTAGCTTTTCACTTAAAAAGTTTTTCTAGACTTTAT 1106
Query 1135 TTATATGATTTTTAGTTCACTCTACTTCAGTTATGTAGATATAT 1178
| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1107 TGATATGATTTTTAGTTCAGTCTACTACAGTTATGTAGATATAT 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44260706637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5