BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34970.1
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491160 jgi|Araly1|491160|fgenesh2_kg.7__593__AT4G34970.1 918 0.0
> Ahg491160 jgi|Araly1|491160|fgenesh2_kg.7__593__AT4G34970.1
Length=693
Score = 918 bits (497), Expect = 0.0
Identities = 627/683 (92%), Gaps = 35/683 (5%)
Strand=Plus/Plus
Query 22 AAAAGCTCTCTACACTCAAAATA-TAACGAAAGAACAAGAAGACATCATCTTAGCTCACT 80
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1 AAAAGCTCTCTACACTCAAAATATTAACGAAAGAAGAAGAAGACATCATCTTAGCTCACT 60
Query 81 ATGGCTTTGAAGACGGCGACGAGTGGTATGTGGATGACGGATGATTGCAAGAAATCGTTC 140
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGGCTTTAAAGACGGCGACGAGTGGTATGTGGATGACGGATGATTGCAAGAAATCGTTC 120
Query 141 ATGGAGATGAAATGGAAGAAAGTGCATAGATACGTCGTTTACAAACTCGAGGAGAAGTCT 200
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 ATGGAGATGAAATGGAAGAAAGTGCATAGATACGTCGTTTACAAAATCGAGGAGAAGTCT 180
Query 201 CGGAAAGTCACCGTCGACAAGGTTGGTGCCGCCGGCGAGAGCTACGACGATCTCGCTGCT 260
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CGGAAAGTCACCGTCGACAAGGTTGGTGCCGCCGGCGAGAGCTATGACGATCTCGCTGCT 240
Query 261 TCTTTGCCGGAGGATGACTGTCGTTACGCCGTGTTTGATTTCGATTACGTCACCGTCGAT 320
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 241 TCTTTGCCGGAGGACGACTGTCGCTACGCCGTGTTTGATTTCGATTACGTGACCGTCGAT 300
Query 321 AACTGTCGTATGAGCAAGATCTTCTTCATAACTTGGTCGCCGGAGGCTTCAAGGATAAGG 380
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 AACTGTCGTATGAGCAAGATCTTCTTCATAACTTGGTCACCGGAGGCTTCAAGGATAAGG 360
Query 381 GAGAAGATGATGTACGCGACGTCGAAGAGCGGACTGAGAAGAGTGTTGGATGGTGTTCAC 440
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 361 GAGAAGATGATGTACGCGACGTCGAAGAGCGGACTGAGAAGAGTGTTGGACGGCGTTCAC 420
Query 441 TACGAGCTTCAAGCCACCGACCCAACCGAGATGGGATTTGATAAAATCCAGGACCGGGCC 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TACGAGCTTCAAGCCACCGACCCAACCGAGATGGGATTTGATAAAATCCAGGACCGGGCC 480
Query 501 AAATGATCACAACACATAACTGGAGTTATATCGTCAGTAACTAGCTGTTCTTAACAGTTA 560
|||||||||||| || |||| ||||||| ||| | | | || | | |||
Sbjct 481 AAATGATCACAATACCTAACCGGAGTTACATC---A-T--C-AG-T------A----TTA 522
Query 561 TGACTTATGAGCAGCAATTAATTATCTATTAATGTTATTTA-GTGCTTAACCTCTTCCCT 619
||| | |||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 523 TGA-----G--CAGCAATTAATTCTCTATTAATGTTACTTAAGTGCTTAACCTCTTCCCT 575
Query 620 TTGGTTGTCAAACAAAAT-GATTTACTTC-TATTTTGTTGACAATAGTACTAAACTATTA 677
||| ||||| |||||||| | ||| |||| | |||||||||||||| | || ||||||||
Sbjct 576 TTG-TTGTCCAACAAAATAG-TTTCCTTCCT-TTTTGTTGACAATACTTCTCAACTATTA 632
Query 678 TTAGTGTTTCAgtttaattgttg 700
||||||||||| ||| ||||||
Sbjct 633 TTAGTGTTTCA-TTT--TTGTTG 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28935294003
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5