BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34990.1
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944399 jgi|Araly1|944399|scaffold_700628.1 1168 0.0
Ahg931500 jgi|Araly1|931500|scaffold_303957.1 431 5e-120
Ahg490626 jgi|Araly1|490626|fgenesh2_kg.7__59__AT4G38620.1 350 1e-95
Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1 222 3e-57
> Ahg944399 jgi|Araly1|944399|scaffold_700628.1
Length=877
Score = 1168 bits (632), Expect = 0.0
Identities = 796/870 (91%), Gaps = 32/870 (4%)
Strand=Plus/Plus
Query 59 CAAGAATCAGAAGAAGAAAGATGGGAAGGTCTCCTTGCTGTGAGAAAGACCACACAAACA 118
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 1 CAAGAATCAGAAGAAGAAAGATGGGGAGGTCTCCTTGCTGCGAGAAAGACCACACGAACA 60
Query 119 AAGGAGCTTGGACTAAGGAAGAAGACGATAAGCTCATCTCTTACATCAAAG-CTCACGGT 177
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 61 AAGGAGCTTGGACTAAGGAAGAAGACGATAAGCTCATCTCTTACATC-AAGTCTCACGGC 119
Query 178 GAAGGTTGTTGGCGTTCTCTTCCTAGATCCGCCGGTCTTCAACGTTGCGGAAAAAGCTGT 237
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 GAAGGTTGTTGGCGTTCTCTTCCTAGATCCGCCGGTCTTCAACGTTGCGGCAAAAGCTGT 179
Query 238 CGTCTCCGATGGATTAACTATCTCCGACCTGATCTCAAGAGGGGTAACTTCACCCTCGAA 297
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 180 CGTCTCCGGTGGATTAACTATCTCCGGCCTGATCTCAAGAGGGGTAATTTCACCCTCGAA 239
Query 298 GAAGATGATCTCATCATCAAACTACATAGCCTTCTCGGTAACAAGTGGTCTCTTATTGCG 357
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 240 GAAGATGATCTCATCATCAAACTCCATAGCCTTCTCGGCAACAAGTGGTCTCTTATCGCG 299
Query 358 ACGAGATTACCAGGAAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAG 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACGAGATTACCGGGAAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAG 359
Query 418 AGGAAGCTATTAAGAAAAGGGATTGATCCGGCGACTCATCGACCTATCAACGAGACCAAA 477
|||||||||||||||| |||||||||||| |||||||||||||| |||||| | | ||
Sbjct 360 AGGAAGCTATTAAGAAGAGGGATTGATCCCGCGACTCATCGACCGATCAAC-A-A--AA- 414
Query 478 ACTTCTCAAGATTCGTCTGATTCTAGTAAAACAGAGGACCCTCTTGTCAAGATTCTCTCT 537
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 415 -CTCCTCAAGATTCGTCTGATTCTAGTAAAACAGAGGACTCTCTTGTCAAGATTATCTCT 473
Query 538 TTTGGTCCTCAGCTGGAGAAAATAGCAAATTTCGGGGACGAGAGAA-T----------TC 586
|| ||||||||| ||||||||||||||||||| ||||||||||||| | ||
Sbjct 474 TTCGGTCCTCAGTTGGAGAAAATAGCAAATTTTGGGGACGAGAGAACTGAAAAGGGACTC 533
Query 587 A------AAA--GAGAG--TTGAGTACTCAGTTGTTGAAGAAAGATGTCTGGACTTGAAT 636
| ||| ||||| |||||||||| ||||| |||||||||||| | |||||||||
Sbjct 534 ATGTGCCAAAAAGAGAGAGTTGAGTACTCTGTTGTCGAAGAAAGATGTGTAGACTTGAAT 593
Query 637 CTTGAGCTTAGGATCAGTCCACCATGGCAAGACAAGCTCCATGATGAGAGGAACCTAAGG 696
|| |||||||| ||||||||||| ||||||||| ||||||||||||||| |||||| |||
Sbjct 594 CTGGAGCTTAGAATCAGTCCACCGTGGCAAGACCAGCTCCATGATGAGAAGAACCTGAGG 653
Query 697 TTTGGGAGAGTGAAGTATAGGTGCAGTGCGTGCCGTTTTGGATTCGGGAACGGCAAGGAG 756
||||||||||||||| ||| ||| | |||||| ||||||||||| |||||||||||||||
Sbjct 654 TTTGGGAGAGTGAAGCATATGTGTACTGCGTGTCGTTTTGGATTTGGGAACGGCAAGGAG 713
Query 757 TGTAGCTGTAATAATGTGAAATGTCAAACAGAGGACAGTAGTAGCAGCAGTTATTCTTCA 816
|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGTATATGTGATAATAAGAAATGTCAAACAGAGGACAGTAGTAGCAGCAGTTATTCTTCA 773
Query 817 ACCGACATTAGTAGTAGCATTGGTTATGACTTCTTGGGTCTAAACAACACTAGGGTTTTG 876
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 774 ACCGACATTAGTAGTAGCATTGGTTATGACTTCTTGGGTCTAAACAA---TAGGGTTTTG 830
Query 877 GATTTTAGCACTTTGGAAATGAAATGAAAT 906
||||||||||||||||||||||||||||||
Sbjct 831 GATTTTAGCACTTTGGAAATGAAATGAAAT 860
> Ahg931500 jgi|Araly1|931500|scaffold_303957.1
Length=860
Score = 431 bits (233), Expect = 5e-120
Identities = 361/422 (86%), Gaps = 11/422 (3%)
Strand=Plus/Plus
Query 67 AGAAGAAGAAAG--ATGGGAAGGTCTCCTTGCTGTGAGAAAGACCACACAAACAAAGGAG 124
||||||||| || |||||||| ||||||||||| |||||||| |||| |||||||| |
Sbjct 17 AGAAGAAGAGAGCTATGGGAAGATCTCCTTGCTGCGAGAAAGAACACATGAACAAAGGTG 76
Query 125 CTTGGACTAAGGAAGAAGACGATAAG-CTCATCTCTTACATCAAAG-CTCACGGTGAAGG 182
|||||||||| ||||||||||| || ||| ||||||| ||| ||| |||||||||||||
Sbjct 77 CTTGGACTAAAGAAGAAGACGA-GAGACTCGTCTCTTATATC-AAGTCTCACGGTGAAGG 134
Query 183 TTGTTGGCGTTCTCTTCCTAGATCCGCCGGTCTTCAACGTTGCGGAAAAAGCTGTCGTCT 242
||||||||| |||||||||||| |||| ||||| | |||||||| ||||||||||||||
Sbjct 135 TTGTTGGCGATCTCTTCCTAGAGCCGCTGGTCTCCTCCGTTGCGGTAAAAGCTGTCGTCT 194
Query 243 CCGATGGATTAACTATCTCCGACCTGATCTCAAGAGGGGTAACTTCACCC-TCGAAGAAG 301
||| ||||||||||||||||||||||||||||| || || ||||| || | | || ||||
Sbjct 195 CCGGTGGATTAACTATCTCCGACCTGATCTCAAAAGAGGAAACTTTACACAT-GATGAAG 253
Query 302 ATGATCTCATCATCAAACTACATAGCCTTCTCGGTAACAAGTGGTCTCTTA-TTGCGACG 360
|||| || |||||||| || |||||||| || || |||||||||||| ||| ||||| ||
Sbjct 254 ATGAACTTATCATCAAGCTTCATAGCCTCCTTGGCAACAAGTGGTCT-TTAATTGCGGCG 312
Query 361 AGATTACCAGGAAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAGAGG 420
|||||||| |||||||||||||| ||||| |||||||||||||| |||||| | ||||||
Sbjct 313 AGATTACCTGGAAGAACAGATAATGAGATCAAGAATTACTGGAATACACATATAAAGAGG 372
Query 421 AAGCTATTAAGAAAAGGGATTGATCCGGCGACTCATCGACCTATCAACGAGACCAAAACT 480
||||| || || |||||||||||||| || || ||| || | ||||||||| | |||| |
Sbjct 373 AAGCTTTTGAGCAAAGGGATTGATCCAGCCACGCATAGAGCGATCAACGAGGCGAAAA-T 431
Query 481 TC 482
||
Sbjct 432 TC 433
> Ahg490626 jgi|Araly1|490626|fgenesh2_kg.7__59__AT4G38620.1
Length=1286
Score = 350 bits (189), Expect = 1e-95
Identities = 348/424 (82%), Gaps = 13/424 (3%)
Strand=Plus/Plus
Query 75 AAAG-ATGGGAAGGTCTCCTTGCTGTGAGAAAGAC-CACACAAACAAAGGAGCTTGGACT 132
|||| ||||||||||| || || |||||||||| | ||||||||||||||||| |||||
Sbjct 336 AAAGTATGGGAAGGTCACCGTGTTGTGAGAAAG-CTCACACAAACAAAGGAGCATGGACG 394
Query 133 AAGGAAGAAGACGATAAGCTCATCTCTTACATCAAAGCTCACGGTGAAGGTTGTTGGCGT 192
|| ||||| ||||| | |||||| ||||||| |||||||| || ||||| || ||| |
Sbjct 395 AAAGAAGAGGACGAGAGGCTCATAGCTTACATTAAAGCTCATGGAGAAGGCTGCTGGAGA 454
Query 193 TCTCTTCCTAGATCCGCCGGTCTTCAACGTTGCGGAAAAAGCTGTCGTCTCCGATGGATT 252
||||| || | | ||||||| |||| || || || |||||||| |||||||| |||||
Sbjct 455 TCTCTCCCCAAAGCCGCCGGACTTCTTCGGTGTGGCAAAAGCTGCCGTCTCCGGTGGATC 514
Query 253 AACTATCTCCGACCTGATCTCAAGAGGGGTAACTTCACCCTCGAAGAAGATGATCTCATC 312
||||||||||| ||||| || ||| | || ||||||||| |||||||| || ||||||
Sbjct 515 AACTATCTCCGGCCTGACCTTAAGCGTGGAAACTTCACCGAGGAAGAAGACGAGCTCATC 574
Query 313 ATCAAACTACATAGCCTTCTCGGTAACAAGTGGTCTCTTATTG-CGACGAGATTACCAGG 371
||||| || ||||||||||| || ||||| ||||| ||||||| || ||||||||| ||
Sbjct 575 ATCAAGCTCCATAGCCTTCTTGGCAACAAATGGTCGCTTATTGCCG-GGAGATTACCGGG 633
Query 372 AAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAGAGGAA-GCT-ATTA 429
|||||||||||||||||||||||||||||||||||||||| | | || ||| ||| || |
Sbjct 634 AAGAACAGATAACGAGATTAAGAATTACTGGAACACACATAT-ACGAAGAAAGCTTATAA 692
Query 430 AGAAAAGGGATTGATCCGGCGACTCATCGACCTATC-AACGAGACCAAAA-CTTCTCAAG 487
| | | ||||||||||| |||||||| |||| ||| || || | || | |||||||||
Sbjct 693 ACAGA-GGGATTGATCCAACGACTCATAGACCAATCCAA-GA-ATCATCAGCTTCTCAAG 749
Query 488 ATTC 491
||||
Sbjct 750 ATTC 753
> Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1
Length=980
Score = 222 bits (120), Expect = 3e-57
Identities = 321/413 (78%), Gaps = 34/413 (8%)
Strand=Plus/Plus
Query 75 AAAGATGGGAAGGTCTCCTTGCTGTGAGAAAGAC-CACACAAACAAAGGAGCTTGGACTA 133
|||||||||||| || || ||||| ||||||| | |||| ||||||||||||||||||
Sbjct 80 AAAGATGGGAAGATCACCATGCTGCGAGAAAG-CTCACATGAACAAAGGAGCTTGGACT- 137
Query 134 AGGAAGAAGACGATAAGC-TCATC--T-CTTACAT-C--AAAGCTCACGGTGAAGGTTGT 186
| ||||||| ||| ||| || || | |||||| | ||| ||||||||||||||
Sbjct 138 A--AAGAAGAAGATCAGCTTC-TCGTTGATTACATCCGTAAA---CACGGTGAAGGTTGC 191
Query 187 TGGCGTTCTCTTCCTAGATCCGCCGGTCTT-CA-ACGTTGCGGAAAAAGCTGTCG-TCTC 243
||||| ||||| ||| | ||||||| || || | | || || || || ||| | | |
Sbjct 192 TGGCGATCTCTCCCTCGCGCCGCCGG-ATTACAGA-GATGTGGTAAGAGTTGTAGAT-TG 248
Query 244 CGATGGATTAACTATCTCCGACCTGATCTCAAGAGGGGTAACTTCACCCTCGAAGAAGAT 303
||||||| || ||||| |||| |||||||| || || || ||||| |||||||||
Sbjct 249 AGATGGATGAATTATCTAAGACCAGATCTCAAAAGAGGCAATTTCACTGAAGAAGAAGAT 308
Query 304 GATCTCATCATCAAACTACATAGCCTT-CTCGGTAACAAGTGGTCTCTT-ATTGC-GACG 360
|| ||||||||||| || ||||| ||| || |||||||| |||||| || || || | |
Sbjct 309 GAACTCATCATCAAGCTCCATAG-CTTGCTTGGTAACAAATGGTCT-TTAATAGCTG-GG 365
Query 361 AGATTACCAGGAAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAGAGG 420
||||||||||||||||||||||||||||| ||||| || |||||||| ||| | ||||||
Sbjct 366 AGATTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAACACTCATATCAAGAGG 425
Query 421 AAGCTA-TTAAGAAAAGGGATTGATCCGG-CGACTCATCGACCT-ATCAACGA 470
||||| ||| | ||||||||||| | |||||||| | | ||||||||
Sbjct 426 AAGCTTCTTA-GCCGTGGGATTGATCCAAAC-ACTCATCGTC-TGATCAACGA 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35034960723
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5