BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35000.1
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491157 jgi|Araly1|491157|fgenesh2_kg.7__590__AT4G35000.1 1862 0.0
> Ahg491157 jgi|Araly1|491157|fgenesh2_kg.7__590__AT4G35000.1
Length=1194
Score = 1862 bits (1008), Expect = 0.0
Identities = 1139/1200 (95%), Gaps = 17/1200 (1%)
Strand=Plus/Plus
Query 1 GCTGAGGAAAACAGGAGATAACTGACACCGCCCATTCAAATCCCGTTTCTCATTGGGTGG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTGAGGAAAACAGCAGATAACTGACACCGCCCATTCAAATCCCGTTTCTCATTGGGTGG 60
Query 61 TTTTATCTCTTTGGCCCAAATTTCGGTGTAACCaaa-aaaaa---TCTT--CACACACAT 114
|||||||||||||||||||||||||||| ||||||| ||||| |||| |||||||||
Sbjct 61 TTTTATCTCTTTGGCCCAAATTTCGGTGCAACCAAATAAAAATCTTCTTCACACACACAT 120
Query 115 CCTTGACCA-TTTTCTTGTTCATCGCTCTCTTTCTTCTTCACAAATCCTAAACGAGT--- 170
||||||||| ||||||||||||||||||||||||| || ||| ||||| | ||||||
Sbjct 121 CCTTGACCATTTTTCTTGTTCATCGCTCTCTTTCTCCTCCACCAATCCCAGACGAGTAGG 180
Query 171 AG-GAGCTATGGCTGCACCGATTGTTGATGCGGAGTACTTGAAAGAGATCACTAAGGCTC 229
|| |||||||||| |||||||||||||| || ||||||||||| | |||||| |||||||
Sbjct 181 AGCGAGCTATGGCGGCACCGATTGTTGACGCTGAGTACTTGAAGGCGATCACCAAGGCTC 240
Query 230 GCCGTGAGCTCCGTTCTCTCATCGCGAACAAGAACTGTGCTCCTATCATGCTCCGATTGG 289
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 GCCGTGACCTCCGGTCTCTCATCGCGAACAAGAACTGTGCTCCGATCATGCTCCGATTGG 300
Query 290 CATGGCACGATGCTGGAACCTATGATGCTCAATCGAAGACCGGTGGACCTAATGGCTCTA 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATGGCACGATGCTGGAACCTATGATGCTCAATCGAAGACCGGTGGACCTAATGGCTCTA 360
Query 350 TCAGGAACGAAGAAGAGCACACTCATGGTGCCAACAGTGGTTTGAAGATCGCTCTCGATC 409
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCAGGAACGAAGAAGAGTTCACTCATGGTGCCAACAGTGGTTTGAAGATCGCTCTCGATC 420
Query 410 TCTGTGAGGGCGTGAAAGCTAAGCATCCCAAAATCACATACGCAGACCTGTATCAGCTTG 469
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTGTGAGGGCGTGAAAGCTAAAAATCCCAAAATCACATACGCAGACCTGTATCAGCTTG 480
Query 470 CTGGTGTGGTAGCAGTTGAGGTTACTGGTGGACCTGACATCGTGTTCGTTCCCGGGAGAA 529
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 481 CTGGTGTGGTAGCAGTTGAGGTTACTGGTGGACCTGACATCGTGTTCGTTCCTGGAAGAA 540
Query 530 AGGATTCAAATGTCTGCCCCAAGGAAGGAAGACTTCCTGATGCCAAACAAGGTTTCCAAC 589
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGATTCAAATGTCAGCCCCAAGGAAGGAAGACTTCCTGATGCCAAACAAGGTTTCCAAC 600
Query 590 ATCTCAGAGATGTCTTCTACCGCATGGGACTATCTGATAAGGATATTGTGGCACTCTCAG 649
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCTTAGAGATGTCTTCTACCGCATGGGACTATCTGATAAGGATATTGTGGCACTCTCAG 660
Query 650 GGGGTCATACTCTGGGAAGGGCTCACCCGGAGAGGTCAGGCTTTGATGGACCATGGACCC 709
|||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 661 GGGGTCATACTCTGGGAAGGGCTCACCCAGAGAGGTCAGGCTTCGATGGACCGTGGACTC 720
Query 710 AAGAGCCGCTGAAGTTTGACAACTCCTACTTCGTGGAACTGCTGAAAGGAGAATCAGAGG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGAGCCGCTGAAGTTTGACAACTCCTACTTCGTGGAACTGCTGAAAGGAGAATCAGAGG 780
Query 770 GCTTGTTGAAACTTCCAACTGACAAGACCTTATTGGAAGACCCGGAGTTCCGTCGTCTTG 829
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 781 GCTTGTTGAAACTTCCAACTGACAAGACCTTATTGGAAGACCCGGAGTTTCGTCGTCTTG 840
Query 830 TTGAGCTTTATGCAAAGGATGAAGATGCATTCTTCAGAGACTACGCGGAATCGCACAAGA 889
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 TTGAGCTTTATGCAAAGGATGAAGATGCATTCTTCAGAGACTATGCGGAATCGCACAAGA 900
Query 890 AACTCTCTGAGCTTGGTTTCAACCCAAACTCCTCAGCAGGCAAAGCAGTTGCAGACAGCA 949
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 901 AACTCTCTGAGCTCGGTTTCAACCCGAACTCCTCAGCGGGCAAAGCAGTTGCAGACAGCA 960
Query 950 CGATTCTGGCACAGAGTGCGTTCGGGGTTGCAGTTGCTGCTGCGGTTGTGGCATTTGGTT 1009
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 961 CGATTCTGGCCCAGAGTGCGTTCGGGGTTGCGGTTGCTGCTGCGGTTGTGGCCTTTGGTT 1020
Query 1010 ACTTTTACGAGATCCGGAAGAGGATGAAGTAAACGAAATAGGAAGTAAAACACGAAGCAA 1069
||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1021 ACTTTTACGAGATTCGGAAGAGGATGAAGTAAACGAAATAG-AAGGAAAACACGAAGCAA 1079
Query 1070 CGATGCTCTTATTTGGGTATTAAAGAAACTATTAATCGTCTATCGAATCTATTTTGCTGC 1129
|| | |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1080 CGGTTCTCTTATTTGGGCATTAAAGAAACTATTAATCATCTATCGGATCTATTTTGCTGC 1139
Query 1130 TACAAGATTCTAAACTCTTTGAATCCACGATTCTACTGTTTAGTAGTAAAAAAGTTAAAA 1189
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TACA-----CTAAACTATTTGAATCCACGATTCTACTGTTTAGTAGTAAAAAAGTTAAAA 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45785623317
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5