BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35020.1
Length=1069
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491155 jgi|Araly1|491155|fgenesh2_kg.7__588__AT4G35020.1 1664 0.0
Ahg491041 jgi|Araly1|491041|fgenesh2_kg.7__474__AT4G35950.1 431 5e-120
Ahg937990 jgi|Araly1|937990|scaffold_502181.1 416 2e-115
Ahg496470 jgi|Araly1|496470|fgenesh2_kg.8__2286__AT5G62880.1 274 1e-72
> Ahg491155 jgi|Araly1|491155|fgenesh2_kg.7__588__AT4G35020.1
Length=1012
Score = 1664 bits (901), Expect = 0.0
Identities = 983/1021 (96%), Gaps = 12/1021 (1%)
Strand=Plus/Plus
Query 35 aaaaaaaaGGAAGAAGAAGACC-AAGAAATTGAGGTGCATGTGAGGATGAGTAGTAAAAA 93
|||||||||||||||||||||| |||||||||| |||||||||||| || |||| |||||
Sbjct 1 AAAAAAAAGGAAGAAGAAGACCAAAGAAATTGAAGTGCATGTGAGGCTGCGTAGGAAAAA 60
Query 94 TTAGGAAGACTCTAGTCTGGGAGAGACTTTCAGCAGCTATTTCTTTGTCTTCTTTCTCTT 153
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 61 TTAGGAAGACACTAGTCTGGGAGAGACTCTCAGCAGCTATTTCTTTGTCTTCTTCCTCTT 120
Query 154 TAAAGAACCTCActctctctctctTTAGTCAAAAATCCCCAATTCGTGAACAAATTAGGG 213
|||||||||||| ||||||||| || |||||||||||||||||||| |||||||||
Sbjct 121 TAAAGAACCTCA--CTCTCTCTC----GTGAAAAATCCCCAATTCGTGAAAAAATTAGGG 174
Query 214 TTTTTGAAGTTTGAAGAAGGAGAGAAAGATGAGTGCTTCAAGGTTTATCAAGTGTGTCAC 273
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TTTTTGAAGTTTGAAGAAAGAGAGAAAGATGAGTGCTTCAAGGTTTATCAAGTGTGTCAC 234
Query 274 TGTCGGCGACGGTGCTGTTGGAAAGACTTGTCTT-CTCATCTCCTACACTAGCAACACTT 332
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 235 TGTCGGCGACGGTGCTGTTGGAAAGACTTGT-TTGCTCATCTCCTACACTAGCAACACTT 293
Query 333 TCCCCACGGATTATGTGCCAACTGTGTTCGATAATTTCAGTGCCAATGTGATTGTTGATG 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 294 TCCCCACGGATTATGTGCCAACTGTGTTCGATAATTTCAGTGCCAATGTGATTGTAGATG 353
Query 393 GCAACACTATCAACTTGGGATTGTGGGATACTGCAGGGCAAGAGGACTACAATAGACTAA 452
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GGAACACTATCAACTTGGGATTGTGGGATACTGCAGGGCAAGAGGACTACAATAGACTAA 413
Query 453 GACCTTTGAGCTATCGCGGTGCAGATGTCTTCTTACTTGCATTCTCACTTGTCAGCAAAG 512
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 414 GACCTTTGAGCTATCGCGGTGCAGATGTCTTCTTACTTGCATTCTCTCTCGTTAGCAAAG 473
Query 513 CTAGCTATGAAAATGTTTCTAAAAAGTGGGTTCCTGAACTGAGACATTATGCTCCTGGTG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CTAGCTATGAAAATGTTTCTAAAAAGTGGGTTCCTGAACTGAGACATTATGCTCCTGGTG 533
Query 573 TTCCCATCATCCTCGTTGGAACAAAGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCG 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTCCCATCATCCTCGTTGGAACAAAGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCG 593
Query 633 AGCACCCTGGTGCTGTGCCTATCTCTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTG 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AGCACCCTGGTGCTGTGCCTATCTCTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTG 653
Query 693 GGGCGCCTGCTTATATCGAATGCAGTGCAAAAACTCAACAGAATGTGAAAGCAGTGTTTG 752
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 654 GGGCACCTGCTTATATTGAATGCAGTGCAAAAACTCAACAGAATGTAAAAGCAGTGTTTG 713
Query 753 ATGCGGCTATCAAGGTCGTTCTCCAGCCACCAAAAAACaagaagaagaagaagagaaAAT 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 ATGCGGCTATCAAGGTCGTTCTCCAGCCACCAAAAAACAAGAAGAAGAAGAAGAGAAAAT 773
Query 813 CTCAGAAAGGTTGTTCTATACTCTGATTCAACAAGAAGAAAGGAATCAACAGGAGAATTA 872
|||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct 774 CTCAGAAAGGTTGTTCTATACTGTGATTCAACAAGAAGAAAGGAACCAGCAGGAGAATTA 833
Query 873 GAGCTATAAGTATTTGTTTTCTCCTTTTTCATAACTTGTTTACCCAAGGAATCAAAAATC 932
|||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 834 GAGCTACAAGTATCTGTTTTCTCCTTTTTCATAACTTGTTTACTCAAGGAATCAAAAATC 893
Query 933 TGTTGTTTGTAGTCTGAAAATGACAAAAGTTGAAGAACTAGTAACAAGTATTTGTATTCT 992
|||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 894 TGTTGTTTGTAGTCTGGAATTGACAAA-GTTGAAGAACTAGTAACAAGTATTTGTATTCT 952
Query 993 TGTTTGCATTTTGATCTGTAAATATACCACGAATCCTTGATTTC-TCTGTTTCCTAGATT 1051
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 953 TGTTTGCATTTTGATCTGTAAATATACCACGAATCCTTGATTTCAT-TGTTTCCTAGATT 1011
Query 1052 C 1052
|
Sbjct 1012 C 1012
> Ahg491041 jgi|Araly1|491041|fgenesh2_kg.7__474__AT4G35950.1
Length=1026
Score = 431 bits (233), Expect = 5e-120
Identities = 465/575 (81%), Gaps = 24/575 (4%)
Strand=Plus/Plus
Query 242 ATGAGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACGGTGCTGTTGG-AAAGAC 300
||||| ||||||||||| || ||||||||||| || || || || |||||||| ||| ||
Sbjct 251 ATGAGCGCTTCAAGGTTCATAAAGTGTGTCACCGTTGGTGATGGAGCTGTTGGTAAA-AC 309
Query 301 TTGTCTT-CTCATCTCCTACACTAGCAACACTTTCCCCACGGATTATGTGCCAACTGTGT 359
||| || || ||||||||||| ||||||||||| |||||||||||||| || ||||| |
Sbjct 310 CTGT-TTGCTGATCTCCTACACCAGCAACACTTTTCCCACGGATTATGTTCCCACTGTTT 368
Query 360 TCGATAA-TTTCAGTGCCAATGTGATTGTTGATGGCA-ACACTATCAA-CTTGGGATTGT 416
||||||| ||| ||||| |||||| ||||| |||| | ||| | || ||| |||||||
Sbjct 369 TCGATAACTTT-AGTGCAAATGTGGTTGTTAATGG-AGCCACCGTGAATCTT-GGATTGT 425
Query 417 GGGATACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAG 476
||||||||||||||||||||||||| || ||| ||||||||||||| || |||||||| |
Sbjct 426 GGGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCCG 485
Query 477 ATGTCTTC-TTACTTGCATTCTCACTTGTCAGCAAAGCTAGCTATGAAAATGTTTCTAAA 535
|||| ||| || ||||| ||||| || | || || ||||| ||||| |||||||| ||
Sbjct 486 ATGTTTTCATT-CTTGCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGTTTCCAAG 544
Query 536 AAGTGGGTTCCTGAACTGA-GACATTATGCTCCTGGTGTTCCCA-TCATCCTCGTTGGAA 593
|||||| | || || ||| | || |||||||||||||| |||| | ||||||||||||
Sbjct 545 AAGTGGATCCCAGAGTTGAAG-CACTATGCTCCTGGTGT-CCCAATTGTCCTCGTTGGAA 602
Query 594 C-AAAGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCT 652
| ||| ||||||||||| ||||| || || ||||| ||| || ||||||||||| |||
Sbjct 603 CCAAA-CTTGATCTTCGGGATGACAAACAGTTCTTCATCGACCATCCTGGTGCTGTCCCT 661
Query 653 ATCT-CTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTGGGGCGCCTGCTTATATCGA 711
|| | | || |||||||| || || || |||||||| ||||| || |||||||| |||||
Sbjct 662 AT-TACCACTGCTCAGGGAGAGGAGCTTAAGAAGCTAATTGGAGCACCTGCTTACATCGA 720
Query 712 ATGCAGTGCAAAAACTCAACAGAATGTGAAAG-CAGTGTTTGATGCGGCTATCA-AGGTC 769
|||||| ||||| | ||| |||| ||||| | | ||||||||||| || |||| || |
Sbjct 721 GTGCAGTTCAAAATCACAAGAGAACGTGAAGGGC-GTGTTTGATGCAGCGATCAGAG-TG 778
Query 770 GTTCTCCAGCCACCAAAAAACaagaagaagaagaa 804
|| || || || ||||| | ||||| ||||||||
Sbjct 779 GTCCTTCAACCTCCAAAGCAGAAGAAAAAGAAGAA 813
> Ahg937990 jgi|Araly1|937990|scaffold_502181.1
Length=745
Score = 416 bits (225), Expect = 2e-115
Identities = 469/586 (80%), Gaps = 19/586 (3%)
Strand=Plus/Plus
Query 242 ATGAGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACGGTGCTGTTGGAAAGACT 301
||||| ||||| |||| | ||||| || || || || || || ||||| ||||| |||
Sbjct 21 ATGAGCGCTTCGCGGTTCGTAAAGTGCGTGACGGTTGGTGATGGAGCTGTCGGAAAAACT 80
Query 302 TGTCTT-CTCATCTCCTACACTAGCAACACTTTCCCCACGGATTATGTGCCAACTGTGTT 360
||| || | || || ||||| |||||||||||||| |||||||||||||| || || ||
Sbjct 81 TGT-TTGTTGATTTCTTACACGAGCAACACTTTCCCTACGGATTATGTGCCTACCGTTTT 139
Query 361 CGATAATTTCAGTGCCAATGTGATTGTTGATGGCAA-CACTATCAA-CTTGGGATTGTGG 418
||||||||||||||| |||||| ||||| |||| || |||| | || ||| |||||||||
Sbjct 140 CGATAATTTCAGTGCAAATGTGGTTGTTAATGG-AAGCACTGTGAATCTT-GGATTGTGG 197
Query 419 GATACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGAT 478
|||||||||||||||||||| ||||| ||| ||||||| |||| || || || ||||||
Sbjct 198 GATACTGCAGGGCAAGAGGATTACAACAGATTAAGACCACTGAGTTACCGTGGAGCAGAT 257
Query 479 GTCTTC-TTACTT-GCATTCTCACTTGTCAGCAAAGCTAGCTATGAAAATGTTTCTAAAA 536
|| ||| || || || ||||| ||| |||| ||||| || |||||||| || || ||||
Sbjct 258 GTTTTCATT--TTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATGAAAACGTCTCCAAAA 315
Query 537 AGTGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAA 596
||||| | || || ||| |||||| || |||||||| ||||||||||| ||||||||||
Sbjct 316 AGTGGATCCCGGAGTTGAAACATTACGCACCTGGTGTCCCCATCATCCTTGTTGGAACAA 375
Query 597 AGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTATCT 656
|||||||||||||||||||||| || |||||| ||| || ||||| ||||| || || |
Sbjct 376 AGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTGGCGCTGTCCCGAT-T 434
Query 657 -CTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTGGGGCGCCTGCTTATATCGAATGC 715
|||| ||||| || || || || | ||||| || || || ||| |||| |||||||||
Sbjct 435 ACTACTGCTCAAGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTACTTACATCGAATGC 494
Query 716 AGTGCAAAAACTCAACAGAATGTGAAAGCAGTGTTTGATGCGGCTAT-CAAGGTCGT-TC 773
||| | ||||||||| |||||||||| || |||||||| || || || | || | || |
Sbjct 495 AGTTCTAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCATTCGAG-TGGTGT- 552
Query 774 TCCAGCCACCAAAAAACaagaagaagaagaagagaaAATCTCAGAA 819
| || ||||| || || ||||||||||||||| ||| | |||||
Sbjct 553 TGCAACCACCGAAG--CA-GAAGAAGAAGAAGAGCAAAGCGCAGAA 595
> Ahg496470 jgi|Araly1|496470|fgenesh2_kg.8__2286__AT5G62880.1
Length=933
Score = 274 bits (148), Expect = 1e-72
Identities = 415/540 (77%), Gaps = 34/540 (6%)
Strand=Plus/Plus
Query 245 AGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACGGTGCTGTTGG-AAAGACTTG 303
|||||||||| ||| ||||| ||||| ||||| || || ||||| ||||| ||| || ||
Sbjct 63 AGTGCTTCAAAGTTCATCAAATGTGTGACTGTTGGTGATGGTGCCGTTGGTAAA-ACCTG 121
Query 304 TCTTCTCATCTCCTACACTAGCAACACTTTCCCCACGGATTATGTGCCAACTGTGTTCGA 363
| | ||||||| |||||| ||||| | |||||||| || || | ||||| || || ||
Sbjct 122 TATGCTCATCTGCTACACCAGCAATAAATTCCCCACTGACTACATACCAACAGTTTTTGA 181
Query 364 TAA-TTTCAGTGCCAATG-TGATTGTTGATGGCAACACTATCAACTT-GGGATTGTGGGA 420
|| ||| ||||| |||| || ||||||| |||| |||| |||| || ||| || |||||
Sbjct 182 CAACTTT-AGTGCAAATGTTG-TTGTTGAAGGCACCACTGTCAATTTAGGGCTT-TGGGA 238
Query 421 TACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATC-GCGGTGCAGATG 479
||||| |||||||| ||||| || ||| |||| ||||| || || | | || |||||||
Sbjct 239 CACTGCTGGGCAAGAAGACTATAACAGATTAAGGCCTTTAAGTTA-CAGAGGAGCAGATG 297
Query 480 TCTTCTTACTTG-CATTCTCACTT-GTCAGCAAAGCTAGCTATGAAAATGTTTCTAAAAA 537
| ||| | |||| | |||||| || |||||| ||||||||| || ||||||| ||||||
Sbjct 298 TTTTCGT-CTTGTCTTTCTCA-TTAGTCAGCCGAGCTAGCTACGAGAATGTTTTTAAAAA 355
Query 538 GTGGGTTCCTGAACT-GAGACA-TTATGCTCCTGGTGTTCCCATCA-TCCTCGTTGG-AA 593
|||| | |||||||| | ||| || |||||| || |||||| | | |||| || || |
Sbjct 356 GTGGATCCCTGAACTCCA-ACACTT-TGCTCCAGGAGTTCCCCT-AGTCCTTGTCGGTAC 412
Query 594 CAAAGCTT-GATCTTCGAGATGATAAGCAATTCTTT-GCCGAGCACCCTGGTGCTGT-GC 650
|||| || |||||||| || ||||||| ||| ||| || || || ||||| || | |
Sbjct 413 CAAA--TTAGATCTTCGTGAAGATAAGC-ATTATTTGGCTGACCATCCTGG-ACTATCCC 468
Query 651 CTATCTCTACCGCTCAGGGTGAAGAACTAAAG-AAGCTGATTGGGGCG-CCTGCTTATAT 708
|| | |||| || ||||| || ||| | | ||||| ||||| ||| | | ||| ||
Sbjct 469 CTGTAACTACTGCACAGGGAGAGGAA-TTGCGTAAGCTAATTGGCGCGACGT-ATTACAT 526
Query 709 CGAATGCAG-TGCAAAAACTCAACAGAATGTGAAAGCAGTGTTTGATGCGGCTATCAAGG 767
|| || || | |||||||||||||||||||||||||||| |||||| | || || ||||
Sbjct 527 TGAGTGTAGCT-CAAAAACTCAACAGAATGTGAAAGCAGTTTTTGATTCCGCAATAAAGG 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39800325348
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5