BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35030.3
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491154 jgi|Araly1|491154|fgenesh2_kg.7__587__AT4G35030.2 1762 0.0
Ahg480558 jgi|Araly1|480558|fgenesh2_kg.3__3259__AT2G16750.1 815 0.0
> Ahg491154 jgi|Araly1|491154|fgenesh2_kg.7__587__AT4G35030.2
Length=1455
Score = 1762 bits (954), Expect = 0.0
Identities = 1067/1121 (95%), Gaps = 10/1121 (1%)
Strand=Plus/Plus
Query 137 ATGGGTGAAGAAAAGAGGAGAATTTCAGGAAGATCAGTTTCACTTCCATCGATAGACATA 196
|||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1 ATGGTTGAAGAAAAGAGGAAAATTTCAGGAAGATCGGTTTCGCTTCCATCGATAGACATA 60
Query 197 TTACTAGACGAGAAACCAGGTTGGCCATTTCTTAAAAGAGCAAGTTTAGGGACACCACAA 256
||| |||||||||||||||||||||| |||||||||||||||| |||||||||| | | |
Sbjct 61 TTATTAGACGAGAAACCAGGTTGGCCTTTTCTTAAAAGAGCAACTTTAGGGACA-C-C-A 117
Query 257 CAAGTTCACAAATGGCACACACGAAAAGTCTCAGTGGTCAATTGGGTCATGAGCTTACCT 316
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CAAGTTCACCAATGGCACACACGAAAAGTCTCAGTGGTCAATTGGGTCATGAGCTTACCT 177
Query 317 GAACGGTTTCCA---AATCATCAACAGACTCTAAACTATGAGACAAGCTTGATAAAGAAA 373
|||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 178 GAACGGTTTCCACGTCATCATCATCAGACTCTAAACTATGAGACAAGCTTGATCAAGAAA 237
Query 374 CAAATCAAGGACATATTGAGAGACAATAACAAATGGTTCAACTACAATGTTCTTAGGAAA 433
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||| ||||
Sbjct 238 CAAATCAAGGACATTTTGAGAGACAACAAAAAATGGTTCAAGTACAATGTTCTTAAGAAA 297
Query 434 GCAACATCAGATTTCTCTCAAGAGAATGTGATTGGGAAAGGAGGATGCAACGAAGTGTAC 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCAACATCAGATTTCTCTCAAGAGAATGTGATTGGGAAAGGAGGATGCAACGAAGTGTAC 357
Query 494 CGAGGGATTCTTGAAGATGGAAAAGGCATTGCAGTGAAAATCTTGAAGTCATCATCTAAA 553
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 AGAGGGATTCTTGAAGATGGAAAAGGCATCGCAGTGAAAATCTTGAAGTCATCATCTAAA 417
Query 554 GAAGCAATGACAAATTTCGTTCATGAAATCAACATTATCTCTTCTTTGAGTCACCAAAAC 613
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 GAAGCTATGACAAATTTTGTTCATGAAATCAATATTATCTCTTCTTTGAGTCACCAAAAC 477
Query 614 ATCTCACCGTTACTTGGTGTTTGTGTCCAAGACAATGAACTAATCTCCGTTTACAATCTT 673
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 ATCTCACCGTTACTTGGTGTTTGTGTCCAAGAAAATGAACTAATCTCCGTTTACAATCTT 537
Query 674 TCAAACACAGGAAGTTTAGAAGAAACCCTTCACGGTAAGCAAAAGGGAAAGTATGTATTA 733
|||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 538 TCAACCACGGGAAGTTTAGAGGAAACCCTTCACGGTAAGCGAAAGGGAAAGTATGTATTA 597
Query 734 TCATGGGAAGAGAGATTCAAGATAGCTATCGGGTTGGCGGAAGCATTAGACTATCTTCAT 793
|||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 598 TCATGGGAAGAGAGATTCAAGATAGCTATCGGATTGGTAGAAGCGTTAGACTATCTTCAT 657
Query 794 AACCGATGTTCTAAGCCAGTGATTCATAGAGATGTCAAAACTTCTAACGTCCTTCTATCA 853
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 AACCGATGTTCTAAGCCAGTGATTCATAGAGATGTCAAAACTTCTAACGTTCTTCTATCA 717
Query 854 -CTTGAGCTCCAACCTCAGCTGTCAGATTTTGGTCTGTCGATGTGGGGACCGACAACATC 912
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GC-TGAGCTCCAACCTCAGCTGTCAGATTTTGGTCTGTCGATGTGGGGACCGACAACATC 776
Query 913 TTCTCGATATTCGATACAAGGTGATGTGGTGGGAACATTTGGATATCTTGCACCGGAGTA 972
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 777 GTCTCGATATTCGATACAAGGTGATGTGGTGGGAACGTTTGGATATCTTGCACCGGAGTA 836
Query 973 CTTCATGTATGGAAAAGTCAGTGATAAAGTTGATGTTTACGCCTTTGGAGTGGTTCTGCT 1032
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 837 CTTCATGTACGGAAAAGTCAGTGATAAAGTCGATGTTTACGCCTTTGGAGTGGTTCTGCT 896
Query 1033 TGAACTCATTTCTGGAAGAAATCCTATTTCACCTCAGAATCCTAGAGGACAAGAGAGTTT 1092
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGAACTCATATCTGGAAGACATCCTATTTCACCTCAGAATCCTAGAGGACAAGAGAGTTT 956
Query 1093 GGTAATGTGGGCAAAGCCTTTGATTGATACCGGAAAT-TTAAAAGTACTGTTGGATCCAG 1151
||| ||||||||||||||||||||||||| ||||||| | ||||| || ||||||||||
Sbjct 957 GGTCATGTGGGCAAAGCCTTTGATTGATAGCGGAAATGTAAAAAG-GCTTTTGGATCCAG 1015
Query 1152 ACGTTACAGATATATTCGACGAGTCTCAGTTTCAAAGAATGGTACTTGCTGCTTCACATT 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ACGTTACAGATATATTCGACGAGTCTCAGTTTCAAAGAATGGTACTTGCTGCTTCACATT 1075
Query 1212 GCCTCACAAGATCAGCCACACATCGTCCCAATATAAGACAA 1252
||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1076 GCCTCACAAGATCCGCCACACATCGTCCCAATATCAGACAA 1116
Score = 401 bits (217), Expect = 7e-111
Identities = 237/247 (96%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 1253 ATACTGAGGCTACTAAGAGATGAAAACGAAGCCGGGAAATGGATTATGGAAGAAGAAGGA 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1188 ATACTGAGGCTACTAAGAGATGAAAACGAAGCCGGGAAATGGATTATGGAAGACGAAGAA 1247
Query 1313 AATGAAGATTGCTTCGATGACGAGGTTTACCCGAATTCCAGCACAGAATTACACTTAAAC 1372
|||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1248 AATGGAGATTGCTTTGATGACGAGGTTTATCCGAATTCCAGCACAGAATTACACTTAAGC 1307
Query 1373 CTTGCGATGCTTGAGGTGGAAGACGATGAAACTGCATCAATCAGCAGCATGGAGAGAAGT 1432
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1308 CTTGCGATGCTTGAGGTGGAAGACGATGAATCTGCATCAATCAGCAGCATGGAGAGAAGT 1367
Query 1433 AACAACAGCCTTTTTTCTTCTACTTGTTCATCTAGGGAGCTTCAAACATAAGGAATTATG 1492
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1368 AACAACAGCCTTTTTTCTTCTTCTTGTTCATCTAGGGAGCTTCAAACATAAGGAGTTCTG 1427
Query 1493 CTTTTAG 1499
|||||||
Sbjct 1428 CTTTTAG 1434
> Ahg480558 jgi|Araly1|480558|fgenesh2_kg.3__3259__AT2G16750.1
Length=2341
Score = 815 bits (441), Expect = 0.0
Identities = 1068/1362 (78%), Gaps = 78/1362 (6%)
Strand=Plus/Plus
Query 139 GGGTGAAGAAAAGAGG-AGAATTTCAGGAAGATCAG-TTTCACTTCCATCGATAGACATA 196
|||| |||| |||||| || |||||||||||||| | | || ||||||||| ||| |
Sbjct 926 GGGTCAAGAGAAGAGGAAG-ATTTCAGGAAGATC-GCTATCTCTTCCATCGGTAG--A-G 980
Query 197 TTACTAGACGAGAAACCAGGTTGGCCATTTCTTAA-AAGAGCAAGTTTAGGGAC-ACCAC 254
|| ||||| ||| ||| || |||||||| | ||| || | | | |||| | | || |
Sbjct 981 GTAGTAGACCAGACACCGGGCTGGCCATTGC-TAAGAACAACCACTTTA--G-CTACTTC 1036
Query 255 AACAAGTTCACAAATGGCACAC-ACGAAAAGTCTCAGTGGTCAATTGGGTCATGAGCTTA 313
|| ||||| || || || | ||||| | ||||| ||||||||||||||||||||
Sbjct 1037 AA-TGGTTCA-GCAT--CAGACTAGGAAAA-TATCAGTTGTCAATTGGGTCATGAGCTTG 1091
Query 314 CCTGAACGGTTTCCAAATCATCAACAGACTCTAAAC-TATGAGA-CAAGCTTGATAAAGA 371
|||||||| |||||| |||||| | || | | || | | | | | ||||| | | |
Sbjct 1092 CCTGAACGATTTCCACATCATC--C-GAATAT-GACTTCTCA-ACCGAGCTTTTTCGATA 1146
Query 372 AACAAATCAAGGACATA-TTGAGAGACAAT-AACAAATGGTTCAACTACAATGTTCTTAG 429
||||| | || |||||| | || || ||| |||| |||||||| ||| ||||||| |
Sbjct 1147 AACAACTTAAAGACATACTAAAG-GA-AATAAACAGATGGTTCAGCTATGATGTTCTCAA 1204
Query 430 GAAAGCAACATCAGATTTCTC-TCAAGAGAATGTGATTGGGAAAGGAGGATGCAACGAAG 488
|| |||||||||| ||||||| || ||||||| |||| || ||||||||||| |||||||
Sbjct 1205 GATAGCAACATCAAATTTCTCTTC-AGAGAATCTGATCGGAAAAGGAGGATGTAACGAAG 1263
Query 489 TGTACCGAGGGATTCTTGAAGATGGAAAAGGCATTGCAGTGAAAATCTTGAAG-TCATCA 547
||||| |||| |||||||||||||||||| | | || ||||| |||||| || ||||
Sbjct 1264 TGTACAAAGGGTTTCTTGAAGATGGAAAAGCCGTGGCGGTGAAGATCTTG-AGACCATC- 1321
Query 548 TCT-AAAGAAGCAATG-ACAAATTTCGTTCATGAAATCAACATTATCTCTTCTTTGAGTC 605
| | ||||||||| || | | ||| ||||||||| | | ||| || |||||||||||||
Sbjct 1322 TGTAAAAGAAGCAGTGAAGGAGTTT-GTTCATGAAGTGAGCATAATATCTTCTTTGAGTC 1380
Query 606 AC-CAAAACATCTCACCGTT-ACTTGGTGTTTGTGTCCAAGACAATGAACTAATCTCCGT 663
|| | ||||||||| || || | ||||| | || || || |||| || |||||||| ||
Sbjct 1381 ACTC-AAACATCTCTCCTTTGA-TTGGTCTATGCGTTCATTACAACGATCTAATCTCTGT 1438
Query 664 TTACAATCTTTCAAACACAGGAAGTTTAGAAGAAACCCTTCACGGTAAGCAAAAGGGAAA 723
||||||||| ||| || ||| ||||| || ||||| ||||| |||||||
Sbjct 1439 TTACAATCTCTCATCCAAAGGGAGTTTGGAGGAAACTCTTCAGGGTAAGC---------- 1488
Query 724 GTATGTATT-ATCATGGGAAGAGAGATTCAAGATAGCTATCGGGTT-GGCGGAAGCAT-T 780
||||||| | |||||||||||||||||||||||| || ||||| || |||||| | |
Sbjct 1489 --ATGTATTGA-GATGGGAAGAGAGATTCAAGATAGCAATTGGGTTAGG-GGAAGC-TCT 1543
Query 781 AGACTATCTTCATAACCGATGTTCTAAGCCAGTGATTCATAGAGATGTCAAAACTTCTAA 840
|| ||||| ||||||| ||||||||| || ||||| || |||||||||||| |||| ||
Sbjct 1544 TGATTATCTCCATAACCAATGTTCTAATCCTGTGATCCACAGAGATGTCAAATCTTCAAA 1603
Query 841 CGTCCTTCTATCACTTGAGCTCCAACCTCAGCTGTCAGATTTTGGTCTGTCGATGTGGGG 900
|| ||||| ||| |||| || |||||||||| || ||||| ||||| |||||||||||
Sbjct 1604 TGTTCTTCTCTCAGATGAGTTCGAACCTCAGCTTTCGGATTTCGGTCTTTCGATGTGGGG 1663
Query 901 ACCGACAACATCTTCTCGATATTCGATACAAGGTGATGTGGTGGGAACATTTGGATATCT 960
| | | || |||| || ||| |||||||| | ||||||||||| ||||||||||||||
Sbjct 1664 ATC-A-AA-GTCTTGTCCATACACGATACAAAGAGATGTGGTGGGGACATTTGGATATCT 1720
Query 961 TGCACCGGAGTACTTCATGTATGGAAAAGTCAGTGATAAAGTTGATGTTTACGCCTTTGG 1020
||| || |||||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct 1721 TGCTCCTGAGTACTTTATGTATGGAAAAGTTAGCGATAAAGTTGATGTATATGCCTTTGG 1780
Query 1021 AGTGGTTCTGCTTGAACTCATTTCTGGAAGAAATCCTATTTCACCTCAGAATCCTAGAGG 1080
||| ||| |||| ||||||||||| ||||||| |||||||||| || | | || |||||
Sbjct 1781 AGTAGTTTTGCTCGAACTCATTTCAGGAAGAACTCCTATTTCATCTGATAGCCCAAGAGG 1840
Query 1081 ACAAGAGAGTTTGGTAATGTGGGCAAAGCCTTTGATTGATACCGGAAATTTAAAAGTA-C 1139
||||||||||||||| ||||||||||| || |||| || | || ||| ||||| | |
Sbjct 1841 ACAAGAGAGTTTGGTCATGTGGGCAAAACCAATGATCGAAAAAGGCAATGCAAAAG-AGC 1899
Query 1140 TGTTGGATCCAG-ACGTTACAGATA-TATTCGACGAGTCTCAGTTTCA-AAGAATGGTAC 1196
| |||||||| | | || | | | | ||||| ||| ||||||||| ||| ||||| |
Sbjct 1900 TCTTGGATCC-GAATATTTCTGGGACT-TTCGATGAGGATCAGTTTCATAAG-ATGGTTC 1956
Query 1197 TTGCTGCTTCACATTGCCTCACAAGATCAGCCACACATCGTCCCAATATAAGACAAATAC 1256
|||||||| ||||||| ||||||||| ||||||| ||||||||||||| ||||| |||
Sbjct 1957 TTGCTGCTACACATTGTCTCACAAGAGCAGCCACTTATCGTCCCAATATCAGACAGATAT 2016
Query 1257 TGAGGCTACTAAGAGATGAAAACGAAGCCGGGAAATGGATTATGGA-AGAAGAAGGAA-A 1314
||| ||| ||||||| ||| | || | | ||||||| | | || || |||| ||| |
Sbjct 2017 TGAAGCTGCTAAGAGGCGAAGATGATGTCTCGAAATGGGTGA-AGATAGTAGAA-GAAGA 2074
Query 1315 TGAAGATTGCTTCGATGACGAGGTTTACCCGAATTCCAGCACAGAATTACACTTAAACCT 1374
|||||||| ||||| |||||||||||||| ||||| | |||||||||||||| | |||
Sbjct 2075 CGAAGATTGTTTCGACGACGAGGTTTACCCAAATTCGAATACAGAATTACACTTGAGCCT 2134
Query 1375 TGCGATGCTTGAGGTGGAAGACGATGAAACTGCATCAATCAGCAGCATGGAGAGAAGTAA 1434
|||||| | || |||||||| |||| ||| |||||||| ||| |||||||||||||
Sbjct 2135 CGCGATGGTCGATGTGGAAGATAATGACTCTGTGTCAATCAGTAGCTTGGAGAGAAGTAA 2194
Query 1435 CAACAGCCTTTTTTCTTCTACTTGTTCATCTAGGGAGCTTCA 1476
||||||||||||||||||| ||| || || ||| |||||||
Sbjct 2195 CAACAGCCTTTTTTCTTCTTCTTCCTC-TC-AGG-AGCTTCA 2233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64791506745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5