BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35030.3 Length=1727 Score E Sequences producing significant alignments: (Bits) Value Ahg491154 jgi|Araly1|491154|fgenesh2_kg.7__587__AT4G35030.2 1762 0.0 Ahg480558 jgi|Araly1|480558|fgenesh2_kg.3__3259__AT2G16750.1 815 0.0 > Ahg491154 jgi|Araly1|491154|fgenesh2_kg.7__587__AT4G35030.2 Length=1455 Score = 1762 bits (954), Expect = 0.0 Identities = 1067/1121 (95%), Gaps = 10/1121 (1%) Strand=Plus/Plus Query 137 ATGGGTGAAGAAAAGAGGAGAATTTCAGGAAGATCAGTTTCACTTCCATCGATAGACATA 196 |||| |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| Sbjct 1 ATGGTTGAAGAAAAGAGGAAAATTTCAGGAAGATCGGTTTCGCTTCCATCGATAGACATA 60 Query 197 TTACTAGACGAGAAACCAGGTTGGCCATTTCTTAAAAGAGCAAGTTTAGGGACACCACAA 256 ||| |||||||||||||||||||||| |||||||||||||||| |||||||||| | | | Sbjct 61 TTATTAGACGAGAAACCAGGTTGGCCTTTTCTTAAAAGAGCAACTTTAGGGACA-C-C-A 117 Query 257 CAAGTTCACAAATGGCACACACGAAAAGTCTCAGTGGTCAATTGGGTCATGAGCTTACCT 316 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 CAAGTTCACCAATGGCACACACGAAAAGTCTCAGTGGTCAATTGGGTCATGAGCTTACCT 177 Query 317 GAACGGTTTCCA---AATCATCAACAGACTCTAAACTATGAGACAAGCTTGATAAAGAAA 373 |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 178 GAACGGTTTCCACGTCATCATCATCAGACTCTAAACTATGAGACAAGCTTGATCAAGAAA 237 Query 374 CAAATCAAGGACATATTGAGAGACAATAACAAATGGTTCAACTACAATGTTCTTAGGAAA 433 |||||||||||||| ||||||||||| || ||||||||||| ||||||||||||| |||| Sbjct 238 CAAATCAAGGACATTTTGAGAGACAACAAAAAATGGTTCAAGTACAATGTTCTTAAGAAA 297 Query 434 GCAACATCAGATTTCTCTCAAGAGAATGTGATTGGGAAAGGAGGATGCAACGAAGTGTAC 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GCAACATCAGATTTCTCTCAAGAGAATGTGATTGGGAAAGGAGGATGCAACGAAGTGTAC 357 Query 494 CGAGGGATTCTTGAAGATGGAAAAGGCATTGCAGTGAAAATCTTGAAGTCATCATCTAAA 553 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 358 AGAGGGATTCTTGAAGATGGAAAAGGCATCGCAGTGAAAATCTTGAAGTCATCATCTAAA 417 Query 554 GAAGCAATGACAAATTTCGTTCATGAAATCAACATTATCTCTTCTTTGAGTCACCAAAAC 613 ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 418 GAAGCTATGACAAATTTTGTTCATGAAATCAATATTATCTCTTCTTTGAGTCACCAAAAC 477 Query 614 ATCTCACCGTTACTTGGTGTTTGTGTCCAAGACAATGAACTAATCTCCGTTTACAATCTT 673 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 478 ATCTCACCGTTACTTGGTGTTTGTGTCCAAGAAAATGAACTAATCTCCGTTTACAATCTT 537 Query 674 TCAAACACAGGAAGTTTAGAAGAAACCCTTCACGGTAAGCAAAAGGGAAAGTATGTATTA 733 |||| ||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 538 TCAACCACGGGAAGTTTAGAGGAAACCCTTCACGGTAAGCGAAAGGGAAAGTATGTATTA 597 Query 734 TCATGGGAAGAGAGATTCAAGATAGCTATCGGGTTGGCGGAAGCATTAGACTATCTTCAT 793 |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| Sbjct 598 TCATGGGAAGAGAGATTCAAGATAGCTATCGGATTGGTAGAAGCGTTAGACTATCTTCAT 657 Query 794 AACCGATGTTCTAAGCCAGTGATTCATAGAGATGTCAAAACTTCTAACGTCCTTCTATCA 853 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 658 AACCGATGTTCTAAGCCAGTGATTCATAGAGATGTCAAAACTTCTAACGTTCTTCTATCA 717 Query 854 -CTTGAGCTCCAACCTCAGCTGTCAGATTTTGGTCTGTCGATGTGGGGACCGACAACATC 912 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 GC-TGAGCTCCAACCTCAGCTGTCAGATTTTGGTCTGTCGATGTGGGGACCGACAACATC 776 Query 913 TTCTCGATATTCGATACAAGGTGATGTGGTGGGAACATTTGGATATCTTGCACCGGAGTA 972 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 777 GTCTCGATATTCGATACAAGGTGATGTGGTGGGAACGTTTGGATATCTTGCACCGGAGTA 836 Query 973 CTTCATGTATGGAAAAGTCAGTGATAAAGTTGATGTTTACGCCTTTGGAGTGGTTCTGCT 1032 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 837 CTTCATGTACGGAAAAGTCAGTGATAAAGTCGATGTTTACGCCTTTGGAGTGGTTCTGCT 896 Query 1033 TGAACTCATTTCTGGAAGAAATCCTATTTCACCTCAGAATCCTAGAGGACAAGAGAGTTT 1092 ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 897 TGAACTCATATCTGGAAGACATCCTATTTCACCTCAGAATCCTAGAGGACAAGAGAGTTT 956 Query 1093 GGTAATGTGGGCAAAGCCTTTGATTGATACCGGAAAT-TTAAAAGTACTGTTGGATCCAG 1151 ||| ||||||||||||||||||||||||| ||||||| | ||||| || |||||||||| Sbjct 957 GGTCATGTGGGCAAAGCCTTTGATTGATAGCGGAAATGTAAAAAG-GCTTTTGGATCCAG 1015 Query 1152 ACGTTACAGATATATTCGACGAGTCTCAGTTTCAAAGAATGGTACTTGCTGCTTCACATT 1211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 ACGTTACAGATATATTCGACGAGTCTCAGTTTCAAAGAATGGTACTTGCTGCTTCACATT 1075 Query 1212 GCCTCACAAGATCAGCCACACATCGTCCCAATATAAGACAA 1252 ||||||||||||| |||||||||||||||||||| |||||| Sbjct 1076 GCCTCACAAGATCCGCCACACATCGTCCCAATATCAGACAA 1116 Score = 401 bits (217), Expect = 7e-111 Identities = 237/247 (96%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 1253 ATACTGAGGCTACTAAGAGATGAAAACGAAGCCGGGAAATGGATTATGGAAGAAGAAGGA 1312 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 1188 ATACTGAGGCTACTAAGAGATGAAAACGAAGCCGGGAAATGGATTATGGAAGACGAAGAA 1247 Query 1313 AATGAAGATTGCTTCGATGACGAGGTTTACCCGAATTCCAGCACAGAATTACACTTAAAC 1372 |||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1248 AATGGAGATTGCTTTGATGACGAGGTTTATCCGAATTCCAGCACAGAATTACACTTAAGC 1307 Query 1373 CTTGCGATGCTTGAGGTGGAAGACGATGAAACTGCATCAATCAGCAGCATGGAGAGAAGT 1432 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1308 CTTGCGATGCTTGAGGTGGAAGACGATGAATCTGCATCAATCAGCAGCATGGAGAGAAGT 1367 Query 1433 AACAACAGCCTTTTTTCTTCTACTTGTTCATCTAGGGAGCTTCAAACATAAGGAATTATG 1492 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || Sbjct 1368 AACAACAGCCTTTTTTCTTCTTCTTGTTCATCTAGGGAGCTTCAAACATAAGGAGTTCTG 1427 Query 1493 CTTTTAG 1499 ||||||| Sbjct 1428 CTTTTAG 1434 > Ahg480558 jgi|Araly1|480558|fgenesh2_kg.3__3259__AT2G16750.1 Length=2341 Score = 815 bits (441), Expect = 0.0 Identities = 1068/1362 (78%), Gaps = 78/1362 (6%) Strand=Plus/Plus Query 139 GGGTGAAGAAAAGAGG-AGAATTTCAGGAAGATCAG-TTTCACTTCCATCGATAGACATA 196 |||| |||| |||||| || |||||||||||||| | | || ||||||||| ||| | Sbjct 926 GGGTCAAGAGAAGAGGAAG-ATTTCAGGAAGATC-GCTATCTCTTCCATCGGTAG--A-G 980 Query 197 TTACTAGACGAGAAACCAGGTTGGCCATTTCTTAA-AAGAGCAAGTTTAGGGAC-ACCAC 254 || ||||| ||| ||| || |||||||| | ||| || | | | |||| | | || | Sbjct 981 GTAGTAGACCAGACACCGGGCTGGCCATTGC-TAAGAACAACCACTTTA--G-CTACTTC 1036 Query 255 AACAAGTTCACAAATGGCACAC-ACGAAAAGTCTCAGTGGTCAATTGGGTCATGAGCTTA 313 || ||||| || || || | ||||| | ||||| |||||||||||||||||||| Sbjct 1037 AA-TGGTTCA-GCAT--CAGACTAGGAAAA-TATCAGTTGTCAATTGGGTCATGAGCTTG 1091 Query 314 CCTGAACGGTTTCCAAATCATCAACAGACTCTAAAC-TATGAGA-CAAGCTTGATAAAGA 371 |||||||| |||||| |||||| | || | | || | | | | | ||||| | | | Sbjct 1092 CCTGAACGATTTCCACATCATC--C-GAATAT-GACTTCTCA-ACCGAGCTTTTTCGATA 1146 Query 372 AACAAATCAAGGACATA-TTGAGAGACAAT-AACAAATGGTTCAACTACAATGTTCTTAG 429 ||||| | || |||||| | || || ||| |||| |||||||| ||| ||||||| | Sbjct 1147 AACAACTTAAAGACATACTAAAG-GA-AATAAACAGATGGTTCAGCTATGATGTTCTCAA 1204 Query 430 GAAAGCAACATCAGATTTCTC-TCAAGAGAATGTGATTGGGAAAGGAGGATGCAACGAAG 488 || |||||||||| ||||||| || ||||||| |||| || ||||||||||| ||||||| Sbjct 1205 GATAGCAACATCAAATTTCTCTTC-AGAGAATCTGATCGGAAAAGGAGGATGTAACGAAG 1263 Query 489 TGTACCGAGGGATTCTTGAAGATGGAAAAGGCATTGCAGTGAAAATCTTGAAG-TCATCA 547 ||||| |||| |||||||||||||||||| | | || ||||| |||||| || |||| Sbjct 1264 TGTACAAAGGGTTTCTTGAAGATGGAAAAGCCGTGGCGGTGAAGATCTTG-AGACCATC- 1321 Query 548 TCT-AAAGAAGCAATG-ACAAATTTCGTTCATGAAATCAACATTATCTCTTCTTTGAGTC 605 | | ||||||||| || | | ||| ||||||||| | | ||| || ||||||||||||| Sbjct 1322 TGTAAAAGAAGCAGTGAAGGAGTTT-GTTCATGAAGTGAGCATAATATCTTCTTTGAGTC 1380 Query 606 AC-CAAAACATCTCACCGTT-ACTTGGTGTTTGTGTCCAAGACAATGAACTAATCTCCGT 663 || | ||||||||| || || | ||||| | || || || |||| || |||||||| || Sbjct 1381 ACTC-AAACATCTCTCCTTTGA-TTGGTCTATGCGTTCATTACAACGATCTAATCTCTGT 1438 Query 664 TTACAATCTTTCAAACACAGGAAGTTTAGAAGAAACCCTTCACGGTAAGCAAAAGGGAAA 723 ||||||||| ||| || ||| ||||| || ||||| ||||| ||||||| Sbjct 1439 TTACAATCTCTCATCCAAAGGGAGTTTGGAGGAAACTCTTCAGGGTAAGC---------- 1488 Query 724 GTATGTATT-ATCATGGGAAGAGAGATTCAAGATAGCTATCGGGTT-GGCGGAAGCAT-T 780 ||||||| | |||||||||||||||||||||||| || ||||| || |||||| | | Sbjct 1489 --ATGTATTGA-GATGGGAAGAGAGATTCAAGATAGCAATTGGGTTAGG-GGAAGC-TCT 1543 Query 781 AGACTATCTTCATAACCGATGTTCTAAGCCAGTGATTCATAGAGATGTCAAAACTTCTAA 840 || ||||| ||||||| ||||||||| || ||||| || |||||||||||| |||| || Sbjct 1544 TGATTATCTCCATAACCAATGTTCTAATCCTGTGATCCACAGAGATGTCAAATCTTCAAA 1603 Query 841 CGTCCTTCTATCACTTGAGCTCCAACCTCAGCTGTCAGATTTTGGTCTGTCGATGTGGGG 900 || ||||| ||| |||| || |||||||||| || ||||| ||||| ||||||||||| Sbjct 1604 TGTTCTTCTCTCAGATGAGTTCGAACCTCAGCTTTCGGATTTCGGTCTTTCGATGTGGGG 1663 Query 901 ACCGACAACATCTTCTCGATATTCGATACAAGGTGATGTGGTGGGAACATTTGGATATCT 960 | | | || |||| || ||| |||||||| | ||||||||||| |||||||||||||| Sbjct 1664 ATC-A-AA-GTCTTGTCCATACACGATACAAAGAGATGTGGTGGGGACATTTGGATATCT 1720 Query 961 TGCACCGGAGTACTTCATGTATGGAAAAGTCAGTGATAAAGTTGATGTTTACGCCTTTGG 1020 ||| || |||||||| |||||||||||||| || |||||||||||||| || |||||||| Sbjct 1721 TGCTCCTGAGTACTTTATGTATGGAAAAGTTAGCGATAAAGTTGATGTATATGCCTTTGG 1780 Query 1021 AGTGGTTCTGCTTGAACTCATTTCTGGAAGAAATCCTATTTCACCTCAGAATCCTAGAGG 1080 ||| ||| |||| ||||||||||| ||||||| |||||||||| || | | || ||||| Sbjct 1781 AGTAGTTTTGCTCGAACTCATTTCAGGAAGAACTCCTATTTCATCTGATAGCCCAAGAGG 1840 Query 1081 ACAAGAGAGTTTGGTAATGTGGGCAAAGCCTTTGATTGATACCGGAAATTTAAAAGTA-C 1139 ||||||||||||||| ||||||||||| || |||| || | || ||| ||||| | | Sbjct 1841 ACAAGAGAGTTTGGTCATGTGGGCAAAACCAATGATCGAAAAAGGCAATGCAAAAG-AGC 1899 Query 1140 TGTTGGATCCAG-ACGTTACAGATA-TATTCGACGAGTCTCAGTTTCA-AAGAATGGTAC 1196 | |||||||| | | || | | | | ||||| ||| ||||||||| ||| ||||| | Sbjct 1900 TCTTGGATCC-GAATATTTCTGGGACT-TTCGATGAGGATCAGTTTCATAAG-ATGGTTC 1956 Query 1197 TTGCTGCTTCACATTGCCTCACAAGATCAGCCACACATCGTCCCAATATAAGACAAATAC 1256 |||||||| ||||||| ||||||||| ||||||| ||||||||||||| ||||| ||| Sbjct 1957 TTGCTGCTACACATTGTCTCACAAGAGCAGCCACTTATCGTCCCAATATCAGACAGATAT 2016 Query 1257 TGAGGCTACTAAGAGATGAAAACGAAGCCGGGAAATGGATTATGGA-AGAAGAAGGAA-A 1314 ||| ||| ||||||| ||| | || | | ||||||| | | || || |||| ||| | Sbjct 2017 TGAAGCTGCTAAGAGGCGAAGATGATGTCTCGAAATGGGTGA-AGATAGTAGAA-GAAGA 2074 Query 1315 TGAAGATTGCTTCGATGACGAGGTTTACCCGAATTCCAGCACAGAATTACACTTAAACCT 1374 |||||||| ||||| |||||||||||||| ||||| | |||||||||||||| | ||| Sbjct 2075 CGAAGATTGTTTCGACGACGAGGTTTACCCAAATTCGAATACAGAATTACACTTGAGCCT 2134 Query 1375 TGCGATGCTTGAGGTGGAAGACGATGAAACTGCATCAATCAGCAGCATGGAGAGAAGTAA 1434 |||||| | || |||||||| |||| ||| |||||||| ||| ||||||||||||| Sbjct 2135 CGCGATGGTCGATGTGGAAGATAATGACTCTGTGTCAATCAGTAGCTTGGAGAGAAGTAA 2194 Query 1435 CAACAGCCTTTTTTCTTCTACTTGTTCATCTAGGGAGCTTCA 1476 ||||||||||||||||||| ||| || || ||| ||||||| Sbjct 2195 CAACAGCCTTTTTTCTTCTTCTTCCTC-TC-AGG-AGCTTCA 2233 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64791506745 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5