BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35040.1
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944394 jgi|Araly1|944394|scaffold_700623.1 1286 0.0
> Ahg944394 jgi|Araly1|944394|scaffold_700623.1
Length=831
Score = 1286 bits (696), Expect = 0.0
Identities = 782/825 (95%), Gaps = 0/825 (0%)
Strand=Plus/Plus
Query 381 GTGGTTGGTGGGTTTTAGTAATGGAAGACGGTGAGCTTGATTTCTCCAATCAGGAAGTGT 440
|||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 4 GTGGTTGGTGGGTTATAGTAATGGAAGACGGCGAGCTTGATTTCTCGAATCAGGAAGTGT 63
Query 441 TTTCGAGTTCGGAGATGGGTGAATTACCACCTAGCAATTGTTCGATGGATAGTTTCTTTG 500
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 64 TTTCGAGTTCGGAGATGGGTGAATTACCACCTAGCAACTGTTCGATGGATAGTTTATTTG 123
Query 501 ATGGGCTTTTAATGGATACTAATGCTGCTTGTACCCACACTCACACCTGTAACCCCACTG 560
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 124 ATGGGCTTTGGATGGATACTAATGCTGCTTGTACCCACACTCACACCTGTAACCCCACGG 183
Query 561 GACCAGAGAACACTCATACTCACACGTGCTTCCATGTCCACACCAAGATTCTCCCGGATG 620
|||| |||| |||||||||||| || || |||||||||||||||||||||||||| ||||
Sbjct 184 GACCTGAGAGCACTCATACTCATACCTGTTTCCATGTCCACACCAAGATTCTCCCTGATG 243
Query 621 AGAGCGATGAAAAAGTTTCTACTGATGATACAGCTGAGTCTTGTGGGAAGAAGGGTGAAA 680
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 244 AGAGCGATGAAAGAGTTTCTACTGATGATACAGCTGAGTGTTGTGGGAAGAAGGGTGAAA 303
Query 681 AGAGACCTTTGGGAAACCGGGAAGCGGTTAGAAAGTATAGAGAGAAGAAGAAGGCTAAAG 740
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AGAGACCTTTGGGAAACCGAGAAGCGGTTAGAAAGTATAGAGAGAAGAAGAAGGCTAAAG 363
Query 741 CTGCTTCTTTGGAGGATGAGGTTGCAAGGCTTAGGGCGGTGAATCAGCAGCTGGTGAAGA 800
| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 364 CCGCTTCGTTGGAGGATGAGGTTGCTAGGCTTAAGGCGGTGAATCAGCAGCTGGTGAAGA 423
Query 801 GGTTGCAAAATCAGGCTACCTTGGAAGCTGAGGTTTCGAGGCTTAAGTGTTTGCTTGTGG 860
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 424 GGTTGCAAAATCAGGCTACCTTGGAAGATGAGGTCGCGAGGCTTAAGTGTTTGCTTGTGG 483
Query 861 ATTTGAGAGGAAGAATAGATGGAGAGATTGGATCTTTTCCTTATCAGAAACCTATGGCTG 920
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 484 ATTTGAGAGGAAGGATAGATGGGGAGATTGGATCTTTTCCTTATCAGAAACCTATGACTG 543
Query 921 CAAATATTCCTTCTTTCTCGCACATGATGAATCCTTGTAATGTACAATGTGATGATGAAG 980
|| |||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 544 CAGATATTCCTTCTTTCTCGCACATGACGAATCCGTATAATGTACAATGTGATGATGAAG 603
Query 981 TTTATTGCCCTCAGAATGTGTTTGGAGTGAATAGCCAAGAAGGTGCCTCGATCAATGACC 1040
||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||
Sbjct 604 TTTATTGCCCTCAGAATGTATTTGGCGTGAATAGCCAAGAAGGTGCGTCAATCAATGACC 663
Query 1041 AAGGGTTAAGTGGTTGTGATTTTGATCAGCTACAATGCATGGCTAATCAGAACTTAAATG 1100
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 664 AAGGGTTAAGTGATAGTGATTTTGATCAGCTACAATGCATGGCTAATCAGAACTTAAGTG 723
Query 1101 GAAATGGAAACGGATCATTCAGCAACGTCAATACATCTGTCTCGAATAAGAGAAAAGGTG 1160
| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 724 GCAATGGGAACGGATCATTCAACAACGGCAATACATCTGTCTCGAATAAGAGAAAAGGTG 783
Query 1161 GGCATCGTGCATCAAGAGCAGTTTGAAGCATCATCAAGCTTGTAC 1205
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GACATCGTGCATCAAGAGCAGTTTGAAGCATCATCAAGCTTGTAC 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55154674760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5