BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35050.1
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944393 jgi|Araly1|944393|scaffold_700622.1 2013 0.0
Ahg480561 jgi|Araly1|480561|fgenesh2_kg.3__3262__AT2G16780.1 1243 0.0
> Ahg944393 jgi|Araly1|944393|scaffold_700622.1
Length=1258
Score = 2013 bits (1090), Expect = 0.0
Identities = 1197/1249 (96%), Gaps = 5/1249 (0%)
Strand=Plus/Plus
Query 90 agagagtgatggcggcagaagagGGTAAAGATGAGGCGGGATTGGATCAGGTGGAAGAAG 149
|||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 13 AGAGAGTGATGGCGGCGGAAGAGGGTAAAGATGAGCCAGGATTGGATCAGGTGGAGGAAG 72
Query 150 AGTTCTCTATTTGGAAAAGGAACACACCTTTTCTCTACGATCTTATGATCTCTCACCCAC 209
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 73 AGTTCTCTGTTTGGAAAAGGAACACACCATTTCTCTACGATCTTATGATCTCTCACCCAC 132
Query 210 TAGAATGGCCTTCTCTTACTCTCCACTGGGTTCCTTCGACGCCGATTCCGTACTCGAAAG 269
| |||||||| ||||| |||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 133 TCGAATGGCCATCTCTAACTCTCCATTGGGTCCCTTCGACGCCGATTCCGTACGCGAAAG 192
Query 270 ATCCTTACTTTGCCGTCCATAAGCTTATCCTTGGGACTCATACCTCCGGTGGTGCCCAAG 329
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 193 ATCCTTACTTCGCCGTTCATAAGCTTATCCTAGGGACTCATACCTCCGGTGGTGCCCAGG 252
Query 330 ATTTTCTAATGGTCGCCGATGTCGTTATTCCGACACCCGACGCTGAACCAGGATTAGGTG 389
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 253 ATTTTCTAATGGTCGCCGATGTCGTTATTCCGACACCCGACGCTGAACCAGGGTTAGGTG 312
Query 390 GAAGAGATCAGGAACCTATCGTCCCTAAGGTGGAGATTAAGCAGAAGATACGTGTTGATG 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GAAGAGATCAGGAACCTATCGTCCCTAAGGTGGAGATTAAGCAGAAGATACGTGTTGATG 372
Query 450 GAGAAGTGAACAGAGCGAGGTGTATGCCACAAAAGCCAACTCTTGTGGGTGCTAAAACAA 509
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 373 GAGAAGTGAACAGAGCGCGGTGTATGCCTCAAAAGCCAACTCTTGTGGGTGCTAAAACAA 432
Query 510 GTGGCTCTGAGGTGTTTCTGTTTGATTACGCCAGACTCTCTGGAAAGCCCCAAACAAGTG 569
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 433 GTGGCTCTGAGGTGTTTTTATTTGATTACGCCAGACTCTCTGGAAAGCCCCAAACTAGTG 492
Query 570 AGTGTGATCCTGATCTGAGGCTAATGGGACATGAACAAGAAGGTTATGGATTGGCTTGGA 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AGTGTGATCCTGATCTGAGGCTAATGGGACATGAACAAGAAGGTTATGGATTGGCTTGGA 552
Query 630 GTTCCTTTAAGGAGGGTTATCTTTTGAGTGGCTCACAAGATCAGAGAATCTGCCTTTGGG 689
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 553 GCTCCTTTAAGGAGGGTTATCTTTTGAGTGGGTCACAGGATCAGAGAATCTGCCTTTGGG 612
Query 690 ATGTCTCAGCGACTGCCACTGATAAAGTTTTGAACCCAATGCATGTGTATGAGGGACATC 749
|||| ||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 613 ATGTTTCAGCTACTGCCAGTGATAAGGTTTTGAATCCAATGCATGTGTATGAGGGACATC 672
Query 750 AAAGTATCATCGAAGATGTAGCATGGCACATGAAGAATGAAAACATATTCGGGTCTGCGG 809
|||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 673 AAAGCATCATTGAAGATGTAGCATGGCACATGAAGAATGAGAATATATTCGGGTCTGCGG 732
Query 810 GTGATGATTGTCAATTGGTGATATGGGACTTACGGACTAACCAAATGCAACACCAAGTCA 869
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 733 GTGATGATTGTCAATTGGTTATATGGGACTTACGGACAAACCAAATGCAACACCAAGTCA 792
Query 870 AAGTTCACGAGAGAGAGATAAACTATCTTTCTTTCAATCCCTTCAATGAATGGGTACTAG 929
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 793 AAGTTCACGAGAGAGAGATAAACTATCTTTCTTTCAATCCATTTAATGAATGGGTACTAG 852
Query 930 CCACAGCTTCCTCAGACTCAACTGTCGCCTTGTTTGACCTTCGTAAGCTGACTGCGCCAT 989
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CCACAGCTTCCTCAGACTCGACTGTCGCCTTGTTTGACCTTCGTAAGCTGACTGCGCCAT 912
Query 990 TACATGTCCTGAGCAAACACGAGGGAGAAGTTTTCCAAGTGGAGTGGGATCCCAACCATG 1049
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 913 TACATGTCCTGAGCAGACACGAGGGAGAAGTTTTCCAAGTGGAGTGGGATCCGAACCATG 972
Query 1050 AAACAGTGCTTGCATCTTCTGGCGAGGACAGAAGACTCATGGTCTGGGATATCAACAGGG 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 973 AAACAGTGCTTGCATCTTCTGGCGAGGACAGAAGACTCATGGTCTGGGATATCAATAGGG 1032
Query 1110 TTGGGGATGAGCAGCTTGAAATAGAGTTGGATGCAGAAGATGGTCCACCTGAGCTGCTCT 1169
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TCGGGGATGAGCAGCTTGAAATAGAGTTGGATGCAGAAGATGGTCCACCTGAGCTGCTCT 1092
Query 1170 TCTCTCATGGAGGCCACAAGGCCAAGATATCAGACTTTGCCTGGAACAAGGACGAGCCTT 1229
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1093 TCTCTCATGGAGGTCACAAGGCCAAAATATCAGACTTTGCCTGGAACAAGGACGAGCCTT 1152
Query 1230 GGGTCATCTCAAGTGTAGCTGAAGACAACAGTCTTCAAGTCTGGCAAATGGCGGAAAGCA 1289
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1153 GGGTCATCTCAAGTGTAGCTGAAGACAACAGTCTTCAAGTCTGGCAAATGGCAGAAAGCA 1212
Query 1290 TCTACCGCGAAGATGACGAGGATGAGGATGATGATGATGAAGGCAACCA 1338
|||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 1213 TCTACCGCGAAGATGATGAGGA--A---TGATGATGATGAAGGCAACCA 1256
> Ahg480561 jgi|Araly1|480561|fgenesh2_kg.3__3262__AT2G16780.1
Length=1435
Score = 1243 bits (673), Expect = 0.0
Identities = 1076/1269 (85%), Gaps = 33/1269 (3%)
Strand=Plus/Plus
Query 63 gaga-agaagaacgatcgagagcgagagagagagtgatggcggcagaagagGGTAAAGAT 121
|||| ||||| | ||| ||||| | |||||||| | || |||||| || ||||| ||
Sbjct 3 GAGAGAGAAGTA-GATTGAGAG-GCGAGAGAGA-TAAT---GGCAGATGAAGGTAAGGAG 56
Query 122 GAGGCGGGATTGGATCAGGTGGAAGAAGAGTTCTCTA-TTTGGAA-AAGGAACACACCTT 179
||| ||||| ||||||| ||||| ||||| ||||| | | ||||| || ||||||||| |
Sbjct 57 GAGACGGGAATGGATCAAGTGGAGGAAGATTTCTC-AGTGTGGAAGAA-GAACACACCAT 114
Query 180 TTCTCTACGATCTTATGATCTCTCACCCACTAGAATGGCCTTCTCTTACTCTCCACTGGG 239
|||||||||||||| |||||||||||||||| |||||||| ||||| || |||| ||||
Sbjct 115 TTCTCTACGATCTTTTGATCTCTCACCCACTCGAATGGCCGTCTCTCACAGTCCATTGGG 174
Query 240 TTCCTTCGACGCCGATTCCGTACTCGAAAGATCCTTACTTTGCCGTCCATAAGCTTATCC 299
|||| |||||||| | ||| ||| || || |||||||| | |||||| |||||||| |
Sbjct 175 TTCCATCGACGCCTAATCCTTACGCGGCGGACCCTTACTTCGGCGTCCACAAGCTTATAC 234
Query 300 TTGGGACTCATACCTCCGGTGGTGCCCAAGATTTTCTAATGGTCGCCGATGTCGTTATTC 359
| ||||||||||| |||||| |||| |||||||| || ||||||||||| ||||||| |
Sbjct 235 TCGGGACTCATACTTCCGGTAGTGCTCAAGATTTCCTCATGGTCGCCGACGTCGTTACCC 294
Query 360 CGACACCCGACGCTGAACCAGGATTAGGTGG-AAGAGATCAGGAACCTATCGTCCCTAAG 418
||||||| ||| |||||| || ||||| || | ||||||| ||||| | ||||||
Sbjct 295 CGACACCAAACGGTGAACCTGGGTTAGGCGGCCCTA-ATCAGGATCCTATTATTCCTAAG 353
Query 419 GTGGAGATTAAG-CAGAAGATACGTGTTGATGGAGAAGTGAACAGAGCGAGGTGTATGCC 477
||||||||| || ||||| |||||||||||||||||||||||||||||| |||| |||||
Sbjct 354 GTGGAGATT-AGTCAGAAAATACGTGTTGATGGAGAAGTGAACAGAGCGCGGTGCATGCC 412
Query 478 ACAAAAGCCAACTCTTGTGGGTGCTAAA-ACAAGTGGCTCTGAGGTGTTTCTGTTTGATT 536
|||||||| || ||||||||||| ||| |||||||| | ||||||||||||||||||||
Sbjct 413 TCAAAAGCCGACGCTTGTGGGTGC-AAAGACAAGTGGGTGTGAGGTGTTTCTGTTTGATT 471
Query 537 ACGCCAGAC-TCTCTGGAAAGCCCCAAACAAGTGAGTGTGATCCTGATCTGAGGCTAATG 595
|||||| || | ||| || ||| |||| |||||||||||||||||||||||| || |
Sbjct 472 ACGCCAAACATG-CTGCAACGCCAAAAACGAGTGAGTGTGATCCTGATCTGAGGTTAGTA 530
Query 596 GGACATGAACAAG-AAGGTTATGGATTGGCTTGGAGTTCCTTT-AAGGAGGGTTATCTTT 653
|||||||| |||| |||| |||||| || |||||||| ||||| |||||||||||||||
Sbjct 531 GGACATGA-CAAGGAAGGGTATGGACTGTCTTGGAGT-CCTTTCAAGGAGGGTTATCTTC 588
Query 654 TGAGTGGCTCACAAGATCAGA-GAATCTGCCTTTGGGATGTCTCAGCGACTGC-CACTGA 711
||||||| ||||| ||||||| || |||| ||||||||||| ||||| || | || ||
Sbjct 589 TGAGTGGTTCACAGGATCAGAAGA-TCTGTCTTTGGGATGTTTCAGCTACACCGCAA-GA 646
Query 712 TAAAGTTTTGAACCCAATGCATGTGTATGAGGGACATCAAAGTA-TCATCGAAGATGTAG 770
||| |||||||| ||||| |||||||||||||||| ||||| | |||| |||||||
Sbjct 647 TAAGGTTTTGAATGCAATGTTTGTGTATGAGGGACATGAAAGTGCT-ATCGCAGATGTAT 705
Query 771 CATGGCACATGAAGAATGAAAACATATTCGGGTCTGCGGGTGATGATTGTCAATTGGTGA 830
|||||||||||||||| || ||| | || |||||||||||||| ||| | | ||||||||
Sbjct 706 CATGGCACATGAAGAACGAGAACCTCTTTGGGTCTGCGGGTGAGGATGGCCGATTGGTGA 765
Query 831 TATGGGACTTACGGACTAACCAAATGCAACACCAAGTCAAAGTTCACGAGAGAGAGATAA 890
|||||||| |||||| |||||||||||||||||||| |||||||||||||||||| | |
Sbjct 766 TATGGGACACACGGACAAACCAAATGCAACACCAAGTGAAAGTTCACGAGAGAGAGGTCA 825
Query 891 ACTATCTTTCTTTCAATCCCTTCAATGAATGGGTACTAGCCACAGCTTCCTCAGACTCAA 950
||||||| |||||||||| || || ||||||||| | ||||| |||||||||||||| |
Sbjct 826 ACTATCTATCTTTCAATCTGTTTAACGAATGGGTATTGGCCACTGCTTCCTCAGACTCCA 885
Query 951 CTGTCGCCTTGTTTGACCTTCGTAAGCTGACTGCGCCATTACATGTCCTGAGCAAACACG 1010
|||| |||||||||||||| || ||||| | |||||||||||||||| |||||| || |
Sbjct 886 CTGTTGCCTTGTTTGACCTCCGGAAGCTTAATGCGCCATTACATGTCATGAGCAGCCATG 945
Query 1011 AGGGAGAAGTTTTCCAAGTGGAGTGGGATCCCAACCATGAAACAGTGCTTGCATCTTCTG 1070
||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||| |
Sbjct 946 AGGGAGAGGTTTTCCAAGTGGAGTGGGATCCTAACCATGAAACAGTACTCGCATCTTCAG 1005
Query 1071 GCGAGGACAGAAGACTCATGGTCTGGGATATCAACAGGGTTGGGGATGAGCAGCTTGAAA 1130
| ||||||||||| || ||||||||||| | ||||||||||| || ||||||||||| |
Sbjct 1006 GGGAGGACAGAAGGCTGATGGTCTGGGACCTGAACAGGGTTGGAGAAGAGCAGCTTGAGA 1065
Query 1131 TAGAGTTGGATGCAGAAGATGGTCCACCTGAGCTGCTCTTCTCTCATGGAGGCCACAAGG 1190
|||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||
Sbjct 1066 TAGAGTTGGATGCAGAAGATGGTCCACCAGAGTTACTCTTCTCTCACGGAGGCCACAAGG 1125
Query 1191 CCAAGATATCAGACTTTGCCTGGAAC-AAGGACGAGCCTTGGGTCATCT-CAAGTGTAGC 1248
| ||||||||||||||||| |||||| || |||||||||||||||| | ||||||||||
Sbjct 1126 CTAAGATATCAGACTTTGCTTGGAACGAAA-ACGAGCCTTGGGTCAT-TGCAAGTGTAGC 1183
Query 1249 TGAAGACAACAGTCTTCAAGTCTGGCAAATGGCGGAAAGCATCTACCGCGAAGATGACGA 1308
||||||||||||||||| || ||||| ||||||||||||||||| ||||| || || ||
Sbjct 1184 CGAAGACAACAGTCTTCAGGTGTGGCAGATGGCGGAAAGCATCTATCGCGATGAAGATGA 1243
Query 1309 GGATGAGGA 1317
| ||||||
Sbjct 1244 TGCTGAGGA 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57820991910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5