BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G35060.1

Length=900
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg888563 jgi|Araly1|888563|Al_scaffold_0007_549                     745    0.0  


> Ahg888563 jgi|Araly1|888563|Al_scaffold_0007_549
Length=459

 Score =  745 bits (403),  Expect = 0.0
 Identities = 443/462 (96%), Gaps = 3/462 (1%)
 Strand=Plus/Plus

Query  285  ATGGGTGTTCTTGATCACGTCTCTGAATATTTCGATTGTTCTCATGGAAGCTCCAAGAGA  344
            |||||||||||||||||||||||||||||||||||||| || ||||| |  |||||||||
Sbjct  1    ATGGGTGTTCTTGATCACGTCTCTGAATATTTCGATTGCTCCCATGG-A--TCCAAGAGA  57

Query  345  CACAAAAGTCTACAGACGGTGGATGTGAGGGTTTTGATAGATTGTGAAGGATGCGAGAGG  404
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  58   CACAAAAGTCTACAGACGGTGGATGTGAGGGTTTTGATAGACTGTGAAGGATGCGAGAGG  117

Query  405  AAAGTAAGGAGAGCTTTAGAAGGAATGAGAGGAATAAGAGATGTAACCATCGAGCCAAAT  464
            ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  118  AAAGTGAGGAGAGCCTTAGAAGGAATGAGAGGAGTAAGAGATGTAACCATCGAGCCAAAT  177

Query  465  GCTCAGAAAGTGACAGTGGTTGGGTACGTTGAACCAAACAAAGTGGTGGCTCGTATCATT  524
            |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  178  GCTCAGAAAGTGACAGTGGTTGGGTACGTTGAGCCAAACAAAGTGGTGGCTCGGATCATT  237

Query  525  CACCGAACCGGTAAAAGAGCAGAGCTATATCCTTTCGTTCCTTACGACGTTGTGGCTCAT  584
            ||||| |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct  238  CACCGGACCGGTAAAAGAGCCGAGTTATATCCTTTTGTTCCTTACGACGTTGTGGCTCAT  297

Query  585  CCTTACGCGTCTGGTGTTTACGATAACAGAGCCCCGACTGGGTACGTTAGGAACACCGAG  644
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  CCTTACGCGTCTGGTGTGTACGATAACAGAGCCCCGACTGGGTACGTTAGGAACACCGAG  357

Query  645  TATGATCCACATGTGTCACGTCTCGCACGTGCTAGCTCCACTGAGGTTCGTTATACTACG  704
            |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  358  TATGATCCTCATGTGTCACGGCTTGCACGTGCTAGCTCCACTGAGGTTCGTTATACTACG  417

Query  705  GCGTTTAGCGACGAGAACGCCTCCGCTTGTGTTGTTATGTGA  746
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  GCGTTTAGCGACGAGAACGCCTCCGCTTGTGTTGTTATGTGA  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33357552375


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5