BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35070.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491149 jgi|Araly1|491149|fgenesh2_kg.7__582__AT4G35070.1 1550 0.0
> Ahg491149 jgi|Araly1|491149|fgenesh2_kg.7__582__AT4G35070.1
Length=1342
Score = 1550 bits (839), Expect = 0.0
Identities = 1050/1146 (92%), Gaps = 37/1146 (3%)
Strand=Plus/Plus
Query 286 TCCTTCTCTGTTTTCGAGCGGGAAATTCTGGAGATGGCTATACAAGCGCAGTTGAATTAC 345
|||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 227 TCCTTCTCTGTTTTTGAGCGGGGGATTAAAGAGATGGCTATACAAGCGCAGTTGAATTAC 286
Query 346 AACGCTCCGAATGCGAATCAAATCGGTTTTGGTGGGTCCGAGTTTTCTTTGATCAACAAC 405
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 287 AACGCTTCGAATGCGAATCAAATTGGTTTTGGTGGGTCGGAGTTTTCTTTGATCAACAAC 346
Query 406 AATGGCGTTATCGGAATCGGTAACGATCAGTCTTATC-T--TGTCAATAATCTCCAGTTG 462
|||||||||||||||||||| |||||||||||||||| | ||||||||||||||| | |
Sbjct 347 AATGGCGTTATCGGAATCGGAAACGATCAGTCTTATCATCATGTCAATAATCTCCACTCG 406
Query 463 CAGAAAGATTTCAACCAACATGCTCTGTTTCATCATCAGCATCATCAACAACAACAGTCT 522
|||||||||||||||||||| ||||||||||||||||| || || ||||||||||||| |
Sbjct 407 CAGAAAGATTTCAACCAACAAGCTCTGTTTCATCATCAACACCAACAACAACAACAGTTT 466
Query 523 CCTTCTCAAAGCTTTTTAGCTGCTCAGATGGAGAAACAGAAGCAAGAGATCGATCAGTTC 582
| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 467 CGTTCTCAGAGCTTTTTAGCTGCTCACATGGAGAAACAGAAGCAAGAGATCGATCAGTTC 526
Query 583 ATCAAAATACAGAACGAGAGGTTGAGATATGTGTTGCAAGAACAGAGGAAGCGAGAAATG 642
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 527 ATCAAGATACAGAACGAGAGGTTGAGATATGTGTTGCAAGAACAGAGGAAGCAAGAAATG 586
Query 643 GAGATGAT-TTTACGGAAAATGGAGAGTAAAGCTTTGCTTTTGATGAGTCAGAAGGAAGA 701
|||||||| || | ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 587 GAGATGATCTTGA-GGAAAATGGAGAGTAAAGCTTTGGTTTTGATGAATCAGAAGGAAGA 645
Query 702 AGAAATGTCGAAAGCATTGAACAAGAACATGGAACTCGAAGATCTGTTGAGAAAAATGGA 761
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 646 AGAAATGTCAAAAGCATTGAGCAAGAACATGGAACTCGAAGATCTGTTGAGAAAAATGGA 705
Query 762 AATGGAGAATCAGACGTGGCAGAGAATGGCTCGTGAGAACGAAGCAATTGTGCAAACGCT 821
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 706 AATGGAGAATCAAACGTGGCAGAGAATGGCTCGTGAGAACGAAGCAATGGTGCAAACGCT 765
Query 822 TAACACAACGCTCGAACAGGTTCGCGAGAGAGCCGCCACGTGTTACGACGCTGGTGAGGC 881
|||| |||| |||| ||||||||| || |||||||||||||||||||||||||| || |
Sbjct 766 TAACTCAACTCTCGGACAGGTTCGTGAAAGAGCCGCCACGTGTTACGACGCTGGGGATAC 825
Query 882 AGAGGTGGAGGACGAAGGGTCGTTTTGCGGCGGAGAAGGAGACGGGAATAGTTTGCCGGC 941
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 826 GGAGGTGGAGGACGAAGGGTCGTTTTGCGGCGGAGAAGGGGACGGGAATAGTTTTCCGGC 885
Query 942 GAAGAAGATGAAGATGAGTAGTTGTTGCTGCAATTGTGGGTCTAACGGAGTAACGAGAGT 1001
|||| | | |||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 886 GAAG-A-A-GAAGATTAGTAGTTGTTGCTGCAATTGTGGGTCTAACGGAGTGACGAGAGT 942
Query 1002 TCTGTTTCTGCCGTGTAGGCATCTCTGTTGCTGCATGGATTGCGAGGAAGGGCTTCTTCT 1061
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 943 TCTGTTTCTGCCGTGTAGGCATCTCTGTTGCTGCATGGATTGCGAGGAAGGTCTTGTTCT 1002
Query 1062 TTGTCCGATCTGTAATACCCCCAAGAA-AAGCAGAATCGAGGCCCTCATTTTCTAGGGAA 1120
||||||||||||||||||||||||||| || ||||||||||||| | |||||||||| ||
Sbjct 1003 TTGTCCGATCTGTAATACCCCCAAGAAGAA-CAGAATCGAGGCCTTTATTTTCTAGGAAA 1061
Query 1121 AATCCTTTCTTTTCTCTCA-CCGGAAAAATGCTTGCCTTTGTGTTCCGGTGAACGGAGAG 1179
|||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 1062 AATCCTTTCTTTTCTCTCCTCCGGAAAAATGCTTGGTTTTGTATTCCGGTGAACGGAGAG 1121
Query 1180 TTTTTACTCCGGGTAGATGACGTGGCAGGGTAATTTGGTAAAAATAGGGGAGGAAAGGAA 1239
|||||||||||| |||||||||||||||||| |||||||||| |||||||| || ||||
Sbjct 1122 TTTTTACTCCGG-TAGATGACGTGGCAGGGTTATTTGGTAAA--TAGGGGAG-AA-GGAA 1176
Query 1240 AGTGAGAATAGGGAAAGGTTAGAAATAGTAAAA-GGTTATCTCAAGAAGTAAATTCTGAT 1298
||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1177 AGTGAGATTAGGAAAAGGTTAGAAATAGGAAAAAGGTTATCTCAAGAAGTAAATTCTGAT 1236
Query 1299 TAGGGttttcattttccctttttgttttttggttctttttcCATTCAATGGAGaaaaaaa 1358
|||||||||| |||||| ||||| | | | ||||| | |||||||||
Sbjct 1237 TAGGGTTTTCGTTTTCC-TTTTT-T-----G-T-CTTTT----------G-AGAAAAAAA 1276
Query 1359 aGGAACCCAGCTGGATTTGATGAACATAATTCATATTTTCCTTCTATCTAATGAATTTTC 1418
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1277 AGAAACCCAGCTGGATTTGATGAACATAATTCATATTTTCCTTTTATCTAATGAATATTC 1336
Query 1419 GGATAT 1424
||||||
Sbjct 1337 GGATAT 1342
Score = 315 bits (170), Expect = 8e-85
Identities = 219/241 (91%), Gaps = 9/241 (4%)
Strand=Plus/Plus
Query 4 CCTCTCCTATTCAACTTTTTCAGTTACTTTACTCCGTTCATCTTTTATTTTTCTTTT-CG 62
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1 CCTCTCCTATTCAACTTTTTCAGTTACTTTACTCCGTTCATCTTT-ATTTT-CTTTTTCT 58
Query 63 TCGATTCTCATCAATACTACAAAAATATATACTTCTATATATCGTGCAGAG-G-TTACAT 120
|||||||||||||||||||||||||| | | | |||||| ||||||| | ||||||
Sbjct 59 TCGATTCTCATCAATACTACAAAAATCGACAGATAAATATAT--TGCAGAGAGGTTACAT 116
Query 121 GCATTGTACAATTTTGTTGTCCCGAGAAACAAGCGGATCAGAGACAAAATCAGAGTCGGT 180
||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 117 GCATTGTACAAGTTTATT-TCCCGAGAGACAAGCGGATCAGAGACAAAATCAGAGTCGGT 175
Query 181 TTCCTGCTTTTTGATTCCTCTTTATTAATCAGCAAAGATCGATTCCACTtctcctctctc 240
||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 176 TTCTTGCTTTTTGATTCCTCTTTATTAATCAGCAAAGATCGATTCCACATCTCCT-TCTC 234
Query 241 t 241
|
Sbjct 235 T 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5