BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35080.3
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944390 jgi|Araly1|944390|scaffold_700619.1 1347 0.0
> Ahg944390 jgi|Araly1|944390|scaffold_700619.1
Length=1143
Score = 1347 bits (729), Expect = 0.0
Identities = 785/813 (97%), Gaps = 0/813 (0%)
Strand=Plus/Plus
Query 429 ACGTTATCTACTGGAACCGTTATACTAATCTCTGCAGTAGCTGTGCTTTTGCTTAACCCG 488
||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||
Sbjct 331 ACGTTATCTACTGGAACTGTCATACTAATCTCTGCAGTAGCTGCGCTTTTCCTTAACCCG 390
Query 489 CTTCTTGCACCACCTGCTTTCGCTAGCTTTCAAACTGCAGCTAAATCCGGTTGGCTAACA 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 CTTCTTGCACCACCTGCTTTCGCTAGCTTTCAAACTGCAGCTAAATCCGGTTGGCTAACA 450
Query 549 AGTGCGTGGACCGGTTTCCTTGCTGGTTGCTTGCACACGCTCTCAGGACCTGATCACCTC 608
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 AGTGCGTGGACTGGTTTCCTTGCTGGTTGCTTGCACACGCTCTCAGGACCTGATCACCTC 510
Query 609 GCTGCTTTAGCTCCGCTTTCGATCGGACGCAGCAAAATGGAAAGTGCTGCTGTTGGAGCT 668
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 511 GCTGCTTTGGCTCCGCTTTCAATCGGACGCAGCAAAATGGAAAGTGCTGCTGTTGGAGCT 570
Query 669 CTCTGGGGATGTGGGCATGATGCTGGTCAAGTCATCTTTGGTTTACTGTTTCTGCTACTT 728
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 571 CTCTGGGGATGTGGACACGACGCTGGTCAAGTCATCTTTGGTTTACTGTTTCTGCTACTT 630
Query 729 AAAGACCGGCTTCACATTGAAGTATTACAAACTTGGGGTACAAGAATTGTGGGATTGACT 788
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AAAGACCGGCTCCACATCGAAGTATTACAAACTTGGGGTACAAGAATTGTGGGATTGACA 690
Query 789 CTTGTTATTATCGGTGCTATGGGAATCAAGGAAGCTTCTGAGATTCCAGAACCTTGTGTC 848
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 691 CTTGTTATCATCGGTGCTATGGGAATCAAGGAAGCTTCCGAGATTCCAGAACCTTGTGTT 750
Query 849 GCTTTAGAAACCGACATCAGCATGGTATCAACAGAGAAAGAAGCCTTACCACTGCCCAAA 908
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 GCCTTAGAAACCGACATCAGCATGGTATCAACAGAGAAAGAAGCCTTACCACTGCCCAAA 810
Query 909 AAGAAGAAGATCGGGTTTGCTACATTTGCAACTGGAGTGGTTCACGGGTTGCAACCGGAT 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 AAGAAGAAGATCGGGTTTGCTACATTTGCAACTGGAGTGGTTCACGGGTTGCAACCGGAT 870
Query 969 GCTCTGATGATTGTTTTGCCTGCATTAGCTCTCCCATCACGGTTAGCAGGGTCTGCGTTT 1028
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 871 GCTCTGATGATTGTTTTGCCTGCATTAGCTCTGCCATCTCGGTTAGCAGGGTCTGCGTTT 930
Query 1029 TTGATAATGTTTCTGGTTGGGACAGTTATAGCGATGGGAAGTTACACAGCGTTTATTGGG 1088
|||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 931 CTGATAATGTTTCTGGTTGGGACGGTTATCGCCATGGGAAGTTACACAGCGTTTATTGGG 990
Query 1089 TCTTGCAGTGAGGCTTTGAAAGAGAAAGTTCCAAGGATCACAGAGAAACTAACTTGGGTT 1148
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 991 TCTTGTAGTGAGGCGTTGAAAGAGAAGGTTCCAAGGATCACAGAGAAACTAACTTGGGTT 1050
Query 1149 TCGTCACTTGTGGCTATTGGTCTTGGATTGGGAATTGTCATCAGCCCTTTCTTTGGTTTT 1208
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TCGTCTCTTGTGGCTATTGGTCTTGGATTGGGAATTGTCATCAGCCCTTTCTTTGGTTTT 1110
Query 1209 AGCCTCTACTGAGAAAGTAAAAGCTTCTTCAGG 1241
||||||||||||||||||||||||||| |||||
Sbjct 1111 AGCCTCTACTGAGAAAGTAAAAGCTTCGTCAGG 1143
Score = 472 bits (255), Expect = 5e-132
Identities = 307/332 (92%), Gaps = 4/332 (1%)
Strand=Plus/Plus
Query 27 CTCGCCGAGAGAGAAGGAGACGCCATGGAAAGGcttcttcaaccatcttcttcttcttcc 86
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1 CTCGCCGAGAGAGAAGGAGACGCCATGGAAAGGCTTCTGCAACCATCTTCTTCCTCGTCA 60
Query 87 tcaatttctccttccaaattcccttcacggacttctcctttccttccCCGTCTCCGCTCA 146
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 61 TCAATTTCTCCTTCCAAATTCCCTTCAAGGACTTCTCCTTTCCTTCCTCGTCTCCGCTCA 120
Query 147 TCGGGTCTGAG-CTTTGTCTCGACTCACCGGCCCGAGTCACGCCGAGTCAGCTCAATTTC 205
||| |||| || ||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 121 TCGAGTCT-AGGCTTTGTCTCGACTCATCGTCCCGAGTCACGCCGAGTCAGCTCAATTTC 179
Query 206 CTGCAACAGTTCCCAGATTCCGTCA-CTGTATACGCCTATAGGATCTAACACAACTAACA 264
||||||||||| ||||| || ||| | ||||||| ||||||||||||||| |||||||
Sbjct 180 CTGCAACAGTTTCCAGAACCCATCAAC-GTATACGTCTATAGGATCTAACATGACTAACA 238
Query 265 ATTCCTTCAATGGGTCTCCCAAATCGGATGAATCGAAACCTAATCCCGGATTTCTCACAC 324
|||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||
Sbjct 239 ATTCCTTCAATGGGTCTCCCCAATCGGAAGAATCGAAACCGAATCCCGGATTGCTCACAC 298
Query 325 GGATCGCGACGTCGGCTTCTGAGCAGCGAAAG 356
||||||||||| ||||||||||||||||||||
Sbjct 299 GGATCGCGACGACGGCTTCTGAGCAGCGAAAG 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57249638235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5