BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35090.1
Length=1930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491144 jgi|Araly1|491144|fgenesh2_kg.7__577__AT4G35090.1 2841 0.0
Ahg312977 jgi|Araly1|312977|fgenesh1_pm.C_scaffold_1001757 1110 0.0
> Ahg491144 jgi|Araly1|491144|fgenesh2_kg.7__577__AT4G35090.1
Length=1919
Score = 2841 bits (1538), Expect = 0.0
Identities = 1785/1899 (94%), Gaps = 38/1899 (2%)
Strand=Plus/Plus
Query 53 CATCTCCTCG-TTTTGATAAA-AATCTCTGAATCTCTCCAAGCTCTCTTCTCATCAAACC 110
|||||||||| |||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 35 CATCTCCTCGTTTTTGATAAACTCTCTCTGAATCTCTCCAAACTCTCTTCTCATC-AACT 93
Query 111 ATGGATCCTTACAAGTATCGTCCAGCTAGTTCTTACAACTCTCCCTTCTTCACCACCAAC 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 ATGGATCCTTACAAGTATCGTCCAGCTAGTTCTTACAACTCTCCCTTCTTCACCACCAAC 153
Query 171 TCTGGTGCTCCTGTATGGAACAACAACTCCTCCATGACCGTTGGACCCAGAGGTCCTATC 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 TCTGGTGCTCCTGTATGGAACAACAACTCCTCCATGACCGTTGGACCCAGAGGTCCTATC 213
Query 231 CTTCTTGAGGATTACCATCTCGTTGAGAAGCTTGCCAATTTCGACAGGGAACGGATTCCA 290
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 214 CTTCTTGAGGACTATCATCTGGTTGAGAAGCTTGCCAATTTCGACAGGGAACGGATTCCA 273
Query 291 GAGCGTGTGGTTCATGCCAGAGGAGCCAGTGCTAAAGGTTTCTTTGAGGTCACTCATGAT 350
|||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 274 GAGCGTGTCGTTCATGCCAGGGGAGCTAGTGCTAAAGGTTTTTTTGAGGTCACTCATGAT 333
Query 351 ATCTCTAACCTCACTTGTGCTGACTTTCTCCGAGCTCCCGGTGTTCAGACTCCTGTCATT 410
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 334 ATATCTAACCTCACTTGTGCTGATTTTCTCCGAGCTCCTGGTGTTCAGACTCCTGTCATT 393
Query 411 GTCCGGTTCTCCACCGTTATCCATGAGCGTGGAAGTCCCGAGACCTTGAGAGACCCTCGT 470
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GTGCGGTTCTCCACCGTTATCCATGAGCGTGGAAGTCCCGAGACCTTGAGAGACCCTCGT 453
Query 471 GGTTTTGCAGTCAAGTTCTACACCAGAGAGGGGAACTTTGATCTTGTTGGAAACAACTTT 530
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 454 GGTTTTGCAGTCAAGTTCTACACCAGAGAGGGAAACTTTGATCTTGTTGGAAACAACTTT 513
Query 531 CCTGTTTTCTTCATCCGCGATGGGATGAAGTTCCCTGACATGGTCCACGCTCTTAAGCCG 590
|| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 514 CCGGTTTTTTTCATCCGCGATGGGATGAAGTTCCCTGACATGGTTCACGCCCTTAAGCCG 573
Query 591 AACCCAAAATCTCACATCCAAGAGAACTGGAGAATCCTTGACTTCTTCTCCCACCACCCT 650
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 574 AACCCGAAATCTCACATCCAGGAGAACTGGAGAATCCTTGACTTCTTCTCCCACCACCCT 633
Query 651 GAAAGTTTGAACATGTTCACTTTCCTCTTCGATGATATCGGTATCCCACAAGATTACAGG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GAAAGTTTGAACATGTTCACTTTCCTCTTCGATGATATCGGTATCCCACAAGATTACAGG 693
Query 711 CACATGGATGGTTCAGGTGTCAATACATACATGTTGATCAACAAAGCTGGCAAAGCTCAC 770
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 694 CACATGGACGGTTCAGGTGTCAACACATACATGTTGATCAACAAAGCTGGCAAAGCTCAC 753
Query 771 TACGTGAAGTTCCATTGGAAACCAACTTGTGGAGTCAAGTCTCTTTTGGAAGAAGATGCA 830
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TACGTGAAGTTCCACTGGAAACCAACTTGTGGAGTCAAGTCTCTTTTGGAAGAAGATGCG 813
Query 831 ATTCGTGTTGGAGGAACCAACCACAGTCATGCGACTCAAGACTTGTATGACTCTATAGCT 890
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 814 ATTCGTGTTGGAGGAACCAACCACAGTCACGCGACTCAGGACTTGTATGACTCAATTGCT 873
Query 891 GCTGGAAACTACCCTGAATGGAAGCTCTTTATCCAAATCATTGATCCTGCTGATGAAGAC 950
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 874 GCTGGAAACTACCCTGAATGGAAGCTCTTTATCCAAATCATTGATCCAGCTGATGAAGAC 933
Query 951 AAGTTCGACTTTGACCCGCTCGATGTGACCAAGACCTGGCCTGAGGATATCTTGCCTCTT 1010
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 934 AAGTTCGACTTTGACCCGCTCGATGTGACCAAGACCTGGCCTGAAGATATCTTACCTCTC 993
Query 1011 CAACCTGTTGGACGTATGGTGTTGAACAAGAACATTGACAACTTCTTTGCAGAGAATGAG 1070
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 CAACCTGTTGGTCGTATGGTGTTGAACAAGAACATTGACAACTTCTTTGCAGAGAATGAG 1053
Query 1071 CAACTTGCTTTCTGTCCTGCAATTATTGT-CCCAGGGATACATTACTCAGATGATAAGCT 1129
|||||||| ||||| |||||||| ||||| ||| |||||||| |||||||| || |||||
Sbjct 1054 CAACTTGCCTTCTGCCCTGCAATCATTGTTCCC-GGGATACACTACTCAGACGACAAGCT 1112
Query 1130 GCTTCAAACCCGTGTCTTCTCCTATGCCGATACTCAGAGACACCGTCTTGGACCAAACTA 1189
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1113 GCTTCAAACCCGTGTCTTCTCCTATGCCGACACTCAGAGACACCGTCTTGGACCAAACTA 1172
Query 1190 CCTTCAGCTGCCAGTCAATGCTCCAAAATGTGCTCACCACAACAACCACCATGAGGGATT 1249
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1173 CCTTCAGCTACCAGTCAATGCCCCAAAATGTGCTCACCACAACAACCACCATGAGGGATT 1232
Query 1250 CATGAATTTCATGCACAGGGACGAGGAGGTTAACTACTTCCCGTCGAGGTATGACCAGGT 1309
|||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||
Sbjct 1233 CATGAATTTCATGCACAGGGACGAGGAGGTCAATTACTTCCCATCAAGGTATGACCAGGT 1292
Query 1310 TCGTCATGCTGAGAAGTATCCAACTCCGCCTGCTGTCTGTTCTGGAAAACGTGAGAGGTG 1369
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1293 TCGTCATGCTGAGAAGTATCCAACTCCGCCTGCTGTCTGCTCTGGAAAACGTGAGAGGTG 1352
Query 1370 CATTATTGAGAAAGAGAACAACTTCAAGGAGCCTGGAGAGAGATACCGTACCTTTACACC 1429
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1353 CATTATTGAGAAAGAGAACAACTTCAAGGAGCCTGGAGAGAGATACCGTTCATTTACACC 1412
Query 1430 AGAGAGGCAAGAACGATTCATCCAGAGATGGATTGATGCCCTATCCGACCCACGCATCAC 1489
||||||||||||||| |||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct 1413 AGAGAGGCAAGAACGCTTCATCCAGAGATGGATTGAAGCCTTATCCGACCCTCGCATCAC 1472
Query 1490 GCATGAAATCCGCAGTATCTGGATCTCTTACTGGTCTCAGGCTGATAAGTCTTTGGGACA 1549
||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1473 GCATGAAATCCGCAGCATCTGGATCTCTTACTGGTCTCAGGCTGACAAGTCTCTGGGACA 1532
Query 1550 GAAGCTGGCAAGCCGTCTGAACGTGAGACCAAGCATCTAAAACGAGTG-----A---AA- 1600
|||||||||||||||||| ||||||||||||||||||||||| ||||| | ||
Sbjct 1533 GAAGCTGGCAAGCCGTCTCAACGTGAGACCAAGCATCTAAAATGAGTGTTGCTAGTGAAA 1592
Query 1601 GAA-TTCTTGATTGGCCTTTCTGTGGTTGTTAATTAGCAGAGAA-AA-GAAAATGGGAAG 1657
||| |||||||||||||||| ||||||| | ||||||||||||| || ||| ||||||||
Sbjct 1593 GAAATTCTTGATTGGCCTTTGTGTGGTTCT-AATTAGCAGAGAAGAAAGAAGATGGGAAG 1651
Query 1658 AGATCAAAGTTGCGATAATACAATCTTCATCATGTGGATCTTCTGTGCTATGTTATAATA 1717
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1652 AGATCAAAGTTGCGATAATACAATCTTCATCATGTGGATCTTATGTGCTATGTTGTAATA 1711
Query 1718 GTATCTGTTTAAAGACCAAAAGAACCTTGTGTGTTGTTGTGTCTCTC--GTTTATCAGAA 1775
||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct 1712 GTATCTGTTTAAAGACCAAAAAAACCTTGTGTGTTGTTGTCACTCTCCTGTTTATCAGAA 1771
Query 1776 TAATACATTATA--CAT-T-GAAGATTTATAATCCGTGGTGTTACTTGATGAAAGCTCCT 1831
|||||||||||| ||| | |||||||||||||| | | ||||| |||||||||| ||||
Sbjct 1772 TAATACATTATATACATGTTGAAGATTTATAATC-G-G-TGTTATTTGATGAAAGATCCT 1828
Query 1832 TCTTCCTTGAAAGATTGTGACATA--T-TCTTATATATTTCTCATATATTAACGAATGTA 1888
|||||||||||| | ||||||| | | ||| | || || |||||||||||||||| | |
Sbjct 1829 TCTTCCTTGAAAAAATGTGACAGACATGTCT-A-ATGTT-CTCATATATTAACGAA-G-A 1883
Query 1889 ATCCCGTAAGAGCTGTCGACAAAGACGTGATTTTTAGTC 1927
|| |||||||||||||||||||| ||| |||||||||
Sbjct 1884 --CC-GTAAGAGCTGTCGACAAAGATGTGTTTTTTAGTC 1919
> Ahg312977 jgi|Araly1|312977|fgenesh1_pm.C_scaffold_1001757
Length=2946
Score = 1110 bits (601), Expect = 0.0
Identities = 1178/1454 (81%), Gaps = 49/1454 (3%)
Strand=Plus/Plus
Query 153 CCC-TTCTTCACCACCAACTCTGGTGCTCCTGTATGGAACAACAACTCCTCCATGACCGT 211
||| |||||||| || ||||||||||||||||| ||||| |||||||| || |||| ||
Sbjct 1509 CCCTTTCTTCACTACAAACTCTGGTGCTCCTGTGTGGAATAACAACTCTTCTTTGACTGT 1568
Query 212 TGG-ACCCAGAGGTCCTATCCTTCTTGAGGATTACCATCTCG-TTGAGAAGCTTGCCAA- 268
|| || | ||||||| || ||||| ||||| || ||||| | ||||||| || |||||
Sbjct 1569 CGGAACTC-GAGGTCCAATTCTTCTGGAGGACTATCATCT-GCTTGAGAAACTCGCCAAC 1626
Query 269 TTTCGACAGGGAACGGATTCCAGAGCGTGTGGTTCATGCCAGAGGAGCCAGTGCTAAAGG 328
||| |||||||| |||||||| ||| | || ||||||||||| |||||||||||||| ||
Sbjct 1627 TTT-GACAGGGAGCGGATTCCTGAGAGGGTTGTTCATGCCAGGGGAGCCAGTGCTAAGGG 1685
Query 329 TTTCTTTGAGGTCACTCATGATA-T-CTCTAACCTCACTTGTGCTGACTTTCTCCGAGCT 386
||||||||| ||||||||||| | | | | || || |||| |||||| ||||| ||||
Sbjct 1686 TTTCTTTGAAGTCACTCATGACATTACAC-AA-CTTACTTCTGCTGATTTTCTTCGAGGA 1743
Query 387 CCCGGTGTTCAGACTCCTGTCATTGTCCGGTTCTCCACCGTTATCCATGAGCGTGGAAGT 446
|| |||| |||||||||||| || || || ||||| || || |||||||||||||| |||
Sbjct 1744 CCTGGTGCTCAGACTCCTGTTATCGTTCGTTTCTCAACTGTCATCCATGAGCGTGGCAGT 1803
Query 447 CCCGAGACCT-TGAGAGACCCTCGTGGTTTTGCAGTCAAGTTCTACACCAGAGAGGGGAA 505
||||||| || | ||||| |||||||||||||| || ||||| |||||||||||||||||
Sbjct 1804 CCCGAGA-CTCTCAGAGATCCTCGTGGTTTTGCTGTTAAGTTTTACACCAGAGAGGGGAA 1862
Query 506 CTTTGATCTTGTTGGAAACAACTTTCCTGTTTTCTTCATCCGCGATGGGATGAAGTTCCC 565
||||||||||||||| |||||||| ||||| |||||| |||| ||||| ||||| |||||
Sbjct 1863 CTTTGATCTTGTTGGGAACAACTTCCCTGTATTCTTCGTCCGTGATGGAATGAAATTCCC 1922
Query 566 TGACATGGTCCACGCTCTT-AAGCCGAA-CCCAAAATCTCACATCCAAGAGAACTGGAGA 623
|||||||||||| || || || ||||| ||||| || ||||| || ||||||||||||
Sbjct 1923 TGACATGGTCCATGCA-TTGAAACCGAATCCCAAG-TCCCACATTCAGGAGAACTGGAGA 1980
Query 624 ATCCTTGACTTCTTCTCCCACCACCCTGAAAGTTTGAACATGTTCACTTTCCTCTTCGAT 683
|| || |||||||||||||||||||| || |||||| ||||||| | |||||||| |||
Sbjct 1981 ATACTGGACTTCTTCTCCCACCACCCAGAGAGTTTGCACATGTTTTCGTTCCTCTTTGAT 2040
Query 684 GATATCGGTATCCCACAAGATTACAGGCACATGGATGGTTCAGGTGTCAATACATACATG 743
||| ||||||||||||| || |||||||||||||| || | || ||||| || ||||||
Sbjct 2041 GATCTCGGTATCCCACAGGACTACAGGCACATGGAAGGCGCTGGGGTCAACACTTACATG 2100
Query 744 TTGATCAACAAAGCTGGCAAAGCTCACTACGTGAAGTTCCATTGGAAACCAACTTGTGG- 802
| |||||||||||||| ||||||||||| ||||| ||||| ||||| || ||||||||
Sbjct 2101 CTAATCAACAAAGCTGGAAAAGCTCACTATGTGAAATTCCACTGGAAGCCTACTTGTGGG 2160
Query 803 AGTCAAGT-CTCTTTTGGAAGAAGATGCAATTC-GTGTTGGAGGAACCAACCACAGTCAT 860
| |||| | | || | ||| || || || || | | ||||||||| |||| ||||| |||
Sbjct 2161 A-TCAAATGC-CTGTCGGATGAGGAAGCTAT-CAGAGTTGGAGGATCCAATCACAGCCAT 2217
Query 861 GCGACTCAAGA-CTTGTATGACTCTATAGCTGCTGGAAACTACCCTGAATGGAAGCTCTT 919
|| ||| |||| || |||||||| || || || || ||||| || | ||||| |||||
Sbjct 2218 GCTACTAAAGATCTC-TATGACTCGATCGCAGCCGGGAACTATCCACAGTGGAATCTCTT 2276
Query 920 TATCCAAATCATTGATCCTGCTGATGAAGACAAGTTCGACTTT-GACCCGCTCGATGTGA 978
| || | || |||||||| | |||||||| ||||| ||| || ||||| ||||| |
Sbjct 2277 CGTTCAGGTGATGGATCCTGCCCACGAAGACAAATTCGA-TTTCGATCCGCTTGATGTCA 2335
Query 979 CCAAGACCTGGCCTGAGGATATCTTGCCTCTTCAACCTGTTGGACG-TATGGTGTTGAAC 1037
| |||| |||||||| |||||||||||||| ||||||||||| || | |||| ||||||
Sbjct 2336 CAAAGATTTGGCCTGAAGATATCTTGCCTCTACAACCTGTTGGCCGCT-TGGTCTTGAAC 2394
Query 1038 AAGAACATTGACAACTTCTTTGCA-GAGAATGAGCA-ACTTGCTTTCTGTCCTGCAATTA 1095
|||||||| |||||||||||| | ||||| || || | |||||||||||||||| ||
Sbjct 2395 AAGAACATCGACAACTTCTTTA-ATGAGAACGAACAGA-TTGCTTTCTGTCCTGCTCTTG 2452
Query 1096 TTGTCCCAGGGATACATTACTCAGATGATAAGCTGCTTCAAACCCGTG-TCTTCTCCTAT 1154
| || ||||| || || || ||||||||||| || || || ||||| | ||||||||||
Sbjct 2453 TGGTTCCAGGCATCCACTATTCAGATGATAAACTACTCCAGACCCG-GATCTTCTCCTAC 2511
Query 1155 GCCGATACTCAGAGACACCGTCTTGGACCAAACTACCTTCAGCTGCCAGTCAATGCTCCA 1214
|| |||| ||||||||||||||||||||||||||| || || || || |||||||| ||
Sbjct 2512 GCTGATAGTCAGAGACACCGTCTTGGACCAAACTATCTGCAACTACCTGTCAATGCCCCT 2571
Query 1215 AAATGTGCTCACCACAACAACCACCATGAGGGATTCATGAATTTCATGCACAGGGACGAG 1274
|||||||||||||||||||| |||||||| || || ||||| |||||||||||||| |||
Sbjct 2572 AAATGTGCTCACCACAACAATCACCATGATGGTTTTATGAACTTCATGCACAGGGATGAG 2631
Query 1275 GAGGTTAACTACTTCCCGTCGAGGTATG-A-CCAGGTTCGTCATGCTGAGAAGTATCCAA 1332
||||| || |||||||| || |||| || | |||| |||| ||||| || || || || |
Sbjct 2632 GAGGTCAATTACTTCCCTTCAAGGT-TGGATCCAG-TTCGCCATGCCGAAAAATACCCTA 2689
Query 1333 CTCCGCCTGCTGTCTGTTCTGGAAAACGTGAGAGGTGCATT-ATTGAGAAAGAGAACAAC 1391
| | ||| ||| || |||||||| ||||||| |||| || |||| ||| |||||||||
Sbjct 2690 CAACTCCTATTGTATGCTCTGGAAATCGTGAGAAGTGC-TTCATTGGGAAGGAGAACAAC 2748
Query 1392 TTCAAGGAGCCTGGAGAGAGATACCG-TACCTTT-ACACCAGAGAGGCAAGAACGATTCA 1449
|||||| | || || ||||||||||| | ||| | | || |||||||| || |||
Sbjct 2749 TTCAAGCAACCAGGGGAGAGATACCGGT-CCTGGGATTCG-GACAGGCAAGAGCGGTTCG 2806
Query 1450 TCCAGAGATG-GATTGATGCCCTATCCGACCCACGCATCACGCATGAAATCCGCAGTATC 1508
| || | | | |||| || || || || || || ||||||| ||||||||||| ||
Sbjct 2807 TGAAGCGTTTTG-TTGAAGCGCTTTCGGAGCCTCGTGTCACGCACGAAATCCGCAGCATT 2865
Query 1509 TGGATCTCTTACTGGTCTCAGGCTGATAAGTCTTTGGGACAGAAGCTGGCAAGC-CGTCT 1567
||||||||||||||||||||||| || || || |||||||||| || || | | |||||
Sbjct 2866 TGGATCTCTTACTGGTCTCAGGCAGACAAATCACTGGGACAGAAACTAGCGA-CTCGTCT 2924
Query 1568 GAACGTGAGACCAA 1581
|||||||| ||||
Sbjct 2925 TAACGTGAGGCCAA 2938
Score = 798 bits (432), Expect = 0.0
Identities = 1150/1489 (77%), Gaps = 80/1489 (5%)
Strand=Plus/Plus
Query 125 GTATCGTCCAGCTAGTTCTTACAACTCTCCC-TTCTTCACCACCAACTCTGGTGCTCCTG 183
||||||||| | ||| | |||||| | ||| |||| |||||| ||| |||| |||| |
Sbjct 36 GTATCGTCCTTCGAGTGCGTACAACGC-CCCATTCTACACCACAAACGGTGGTACTCCAG 94
Query 184 TATGGAACAACAACTCCTCCATGACCGTTGGACCCAGAGGTCCTATCCTTCTTGAGGATT 243
| | ||||||| ||| ||| | ||| | ||| |||||||| | ||||||||||| |
Sbjct 95 TCTCCAACAACATCTCTTCCCTCACCATCGGAGAGAGAGGTCCGGTTCTTCTTGAGGACT 154
Query 244 ACCATCTCG-TTGAGAAGCTTGCCAATTTCGA-CAGGGA-ACGGATTCCAGAGCGTGTGG 300
||||||| | | |||||| ||||||||||| | ||| || | |||| || ||| | ||||
Sbjct 155 ACCATCT-GATCGAGAAGGTTGCCAATTTC-ACCAGAGAGA-GGATCCCTGAGAGAGTGG 211
Query 301 TTCATGCCAGAGGAGCCAGTGCTAAAGGTTTCTTTGAGGTCACTCATGATATCTCTAACC 360
|||||||||||||| ||||||||| ||||||||||| ||||| ||||| || || ||||
Sbjct 212 TTCATGCCAGAGGAATCAGTGCTAAGGGTTTCTTTGAAGTCACCCATGACATTTCAAACC 271
Query 361 TCACTTGTGCTGACTTTCTCCGAGCTCCCGGTGTTCAGACTCCTGTCATTGTCCGGTTCT 420
||||||||||||| |||||| ||||||| |||||||| ||||| || |||||||| ||||
Sbjct 272 TCACTTGTGCTGATTTTCTCAGAGCTCCTGGTGTTCAAACTCCGGTTATTGTCCGTTTCT 331
Query 421 CCACCGTTATCCATGAGCGTGGAAGTCCCGAGACCTTGAGAGACCCTCGTGGTTTTGCAG 480
|||||||| |||| || |||| ||||| || ||| |||| || ||||||||| || |
Sbjct 332 CCACCGTTGTCCACGAACGTGCTAGTCCTGAAACCATGAGGGATATTCGTGGTTTCGCTG 391
Query 481 TCAAGTTCTACACCAGAGAGGGGAACTTTGATCTTGTTGGAAACAACTTTCCTGTTTTCT 540
||||||| |||||||||||||||||||||||||||||||| |||||| ||| || ||||
Sbjct 392 TCAAGTTTTACACCAGAGAGGGGAACTTTGATCTTGTTGGGAACAACACTCCCGTGTTCT 451
Query 541 TCATCCGCGATGGGATG-AAGTTCCCTGACATGGTCCACGCTCTTAAGCCGAACCC-AAA 598
||||||| || ||||| || ||||| || | |||||||| || || || ||||| |||
Sbjct 452 TCATCCGTGACGGGATTCAA-TTCCCCGATGTTGTCCACGCCCTGAAACCAAACCCGAAA 510
Query 599 ATCTCACATCCAAGAGAACTGGAGAATCCTTGACTTCTTCTCCCACCACCCTGAAAGTTT 658
| | ||||||||||| ||||||| || || |||| | | |||||| || || |||||
Sbjct 511 A-CAAACATCCAAGAGTACTGGAGGATTCTGGACTACATGTCCCACTTGCCAGAGAGTTT 569
Query 659 GA--ACATGTTCACTTTCCTCTTCGATGATATCGGTATCCCACAAGATTACAGGCACATG 716
| ||||| | || | || |||||| | ||||| |||||||||||||||||||||
Sbjct 570 GCTCACATGGTG-CTGGA-TGTTTGATGATGTTGGTATTCCACAAGATTACAGGCACATG 627
Query 717 GATGGTT-CAGGTGTCAATACATACA-TGTTGAT-CAACAAAGCTGGCAAAGCTCACTAC 773
|| |||| | |||||| | || |||| | ||| | | |||| |||| |||| || ||
Sbjct 628 GAGGGTTTC-GGTGTCCACACCTACACTCTTGTTGC--CAAATCTGGAAAAGTTCTCTTT 684
Query 774 GTGAAGTTCCATTGGAAACCAACTTGTGG-AGTCAAGTCTCTTT-TGGAAGAAGATGC-A 830
||||||||||| |||||||||||||| || | ||||| ||| || | ||||| || |
Sbjct 685 GTGAAGTTCCACTGGAAACCAACTTGCGGGA-TCAAGAATCTGACTG-ATGAAGAGGCCA 742
Query 831 ATTCGT-GTTGGAGGAACCAACCACAGTCATGCGACTCAAG-A-CTTGTATGACT-CTAT 886
| || ||||||||| |||| ||||| || || ||| ||| | || | | || | | ||
Sbjct 743 AG--GTTGTTGGAGGAGCCAATCACAGCCACGCCACT-AAGGATCT-GCACGA-TGCCAT 797
Query 887 AGC-TGCTGGAAACTACCCTGAATGGAAGCTCTTT-ATCCAAATCATTGATCCTGCTGAT 944
| | | || |||||||| || ||||| || ||| ||||| | ||| |||||||| |||
Sbjct 798 TTCAT-CGGGCAACTACCCCGAGTGGAAACT-TTTCATCCAGACCATGGATCCTGCGGAT 855
Query 945 GAAGACAAGTTCGACTTTGACCCGCTCGATGTGACCAAGACCTGGCCTGAGGATATCTTG 1004
|| || ||||| ||||||||||| || ||||||||||||| ||||||||||||||| |||
Sbjct 856 GAGGATAAGTTTGACTTTGACCCACTTGATGTGACCAAGATCTGGCCTGAGGATATTTTG 915
Query 1005 CCTCTTCAACCTGTTGGACG-TATGGTGT-TGAACAAGAACATTGACAACTTCTTTGCAG 1062
||||| ||||| ||||| || | |||| | |||||| || ||||||||||||||| ||
Sbjct 916 CCTCTGCAACCGGTTGGTCGCT-TGGT-TCTGAACAGGACCATTGACAACTTCTT--CA- 970
Query 1063 A-GAA--TGAGCAACTTGCTTTCTGTCCTGCAATTATTGTCCCAGGGATAC-ATTACTCA 1118
| ||| |||||| || |||||| || | || | || || || || | | ||||||
Sbjct 971 ACGAAACTGAGCAGCTCGCTTTCAACCCGGGTCTTGTGGTTCCTGGAAT-CTACTACTCA 1029
Query 1119 GATGATAAGCTGCTTCAAACCCGTG-TCTTCTCCT-ATGCCGATACTCAGAGACACCGTC 1176
|| || |||||||| || | | |||| | || ||| || ||||||||||| ||||
Sbjct 1030 GACGACAAGCTGCTCCAGTGTAG-GATCTT-TGCTTATGGTGACACTCAGAGACATCGTC 1087
Query 1177 TTGGACCAAACTACCTTCAGCTGCCAGTCAATGCTCCAAAATGTGCTCACCACAACAACC 1236
||||||| || || || ||||| ||||| |||||||| |||||||||||||||||||| |
Sbjct 1088 TTGGACCGAATTATCTGCAGCTACCAGTGAATGCTCCCAAATGTGCTCACCACAACAATC 1147
Query 1237 ACCATGAGGGATTCATGAATTTCATGCACAGGGACGAGGAGGTTAACTACTTCCCGTCGA 1296
||||||| || || ||||| ||||||||||| ||||||||| | || |||| ||| || |
Sbjct 1148 ACCATGAAGGTTTTATGAACTTCATGCACAGAGACGAGGAGATCAATTACTACCCCTCAA 1207
Query 1297 GGTATGA-CCAGGTTCG-TCATGCTGAGAA-GTATCCAACTCCGCCTGCTGTCTGTT-C- 1351
|| ||| || | | || | ||| ||||| | ||| | ||| | | | || | |
Sbjct 1208 AGTTTGATCCTG-TCCGCTG-TGCCGAGAAAGC-TCCTA-TCC-C-TACAAACTCCTACA 1261
Query 1352 -TGGAAAACGTG-AGAGGTGCATTATTGAGAAAGAGAACAACTTCAAGGAGCCTGGAGAG 1409
||||| || | || ||| | || ||||||||||||||||||| || |||||||
Sbjct 1262 CTGGAATCCGAACAAAG-TGCGTCATCAAGAAAGAGAACAACTTCAAACAGGCTGGAGAC 1320
Query 1410 AGATACCGTACCTTTA-CACCAGAGAGGCAAGAACGATTCATCCAGAGATGGATTGATGC 1468
|| ||| | | | | ||||||| |||||||| || || | |||||||| |||| |
Sbjct 1321 AGGTACAG-ATCATGGGCACCAGACAGGCAAGACCGGTTTGTTAAGAGATGGGTTGA-GA 1378
Query 1469 C-CTATCCGACCCACG-CATCACGCATGAAATCCGCAGTATCTGGATCTCTTACTGGTCT 1526
|| || || ||||| | |||| || || |||||| | |||||||||||||||||||||
Sbjct 1379 TTCTGTCGGAGCCACGTC-TCACCCACGAGATCCGCGGCATCTGGATCTCTTACTGGTCT 1437
Query 1527 CAGGCTGATA-AGTCT-TTGGGACAGAAGCTGGCAAGCCGTCTGAACGT 1573
||||||||| | ||| |||| |||||| || |||||||||||||||||
Sbjct 1438 CAGGCTGATCGA-TCTCTTGG-ACAGAAACTTGCAAGCCGTCTGAACGT 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72523826480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5