BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35110.3
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353319 jgi|Araly1|353319|fgenesh1_pg.C_scaffold_7000492 1823 0.0
> Ahg353319 jgi|Araly1|353319|fgenesh1_pg.C_scaffold_7000492
Length=1161
Score = 1823 bits (987), Expect = 0.0
Identities = 1105/1163 (95%), Gaps = 4/1163 (0%)
Strand=Plus/Plus
Query 168 ATGGATTTCAATAGAAAAGCTCATCCAGATTGCGTATATGCGGATAATCCTTTCCATGAA 227
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGATTTCAATAGAAAAGCTCATCCGGATTGTGTATATGCGGATAATCCTTTCCATGAA 60
Query 228 TGTGCTTCAGCTTGTTTAGAGAAAATTGCTCAAGGCCATGTCAAGAAGAACACTAAGAAG 287
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTGCTTCAGCTTGTTTAGAGAGAATTGCTCAAGGCCATGTCAAGAAGAACACTAAGAAG 120
Query 288 CAAAGTTCAAGGCTTCTTAGCTTCTCAGGGAGTTTCGGTAGGAAAAAGAAGGAGTCGA-A 346
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 121 CAAAGTTCAAGGCTTCTTAGCTTCTCAGGGAGTTTCGGTAGGAAAAAGAAGGAATC-ACA 179
Query 347 TTCACAACCGCCTACACCGCTATCCGCAAGGCCTTATCAAAACGGCAGAGGCGGTTTTGC 406
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 TTCACAACCGCCTTCACCGCTATCCGCAAGGCCTTACCAAAACGGCAGAGGCGGTTTTGC 239
Query 407 AAATGGTAATTCCCCAAAGGTTCATCATTCTGTAGCTCCACCTGCTTCCGTGAAGAAGAA 466
|||| ||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||
Sbjct 240 AAATAGTAATTCCCCAAAGGTTCATCATTCCGTAGCTCCATCTGTTTCTGTGAAGAAGAA 299
Query 467 GATTGTTTCTGAAACGAAAAATTCTTTCACTTCTTCATCATCCGGTGATCCGGATGATTT 526
||||||||||||| |||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct 300 GATTGTTTCTGAATCGAATAAGTCTTTAACTTCTTCATCATCCGGTGACCCGGATGATTT 359
Query 527 CTTCAACCATAAACCAGAGAAGAAACCTTCTCAAACCATTCCCCTTTCATCAAACAATTT 586
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 360 CTTCAACCATAAACCGGAGAAGAAACCTTCTCAAACCATTCCACTTTCCTCAAACAATTT 419
Query 587 GGTTGATCAAAGCAAAGTGGTATCACCTAAACCGGGAATACAAGAACACAATGGGAAGAT 646
||||||||||||||||| |||||||||||||| ||||||||||||||| | ||||||||
Sbjct 420 GGTTGATCAAAGCAAAGCCGTATCACCTAAACCTGGAATACAAGAACACGACGGGAAGAT 479
Query 647 TGGAGAAGGCGGCGAAACTAGACTCTTTAGTTTCCTAAGCCTTCCAAGATCGCCTGGAA- 705
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 480 TGGAGCAGGCGGCGAAACTAGACTCTTTAGTTTCCTAAGCCTTCCAAGATCGCATG-AAG 538
Query 706 AAGAGAGCAATGATGATTTTTCTGATGATGATGACGAAAACAACAATGAGATTGGTGTAG 765
|||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 539 AAGAGAGCAATGATGATTATACTGATGATGATGAAGAAAACAACAATGAGATTGGTGTAG 598
Query 766 AGCTCGATCTCGAATCAGTAATGTCTGACACTTTTGTCTCTGTCGGGAAATACCGAGTCA 825
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 AGCTCGATCTTGAATCAGTAATGTCTGACACTTTTGTCTCTGTCGGAAAATACCGAGTCA 658
Query 826 GATCGGGTTCATCCACTATACTAAGTGCTGTCATCGAAAAGCACGGAGACATTGCTCAAA 885
|||| ||||||||||| || ||||||||| |||||||||| |||||||||||||||||||
Sbjct 659 GATCCGGTTCATCCACAATCCTAAGTGCTATCATCGAAAAACACGGAGACATTGCTCAAA 718
Query 886 ACTGTAAGCTGGAATCGGATTCAATGCGATCACGTTACCTCGAGTGTTTATGCTCACTGA 945
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 719 ACTGTAAGCTGGAATCGGATTCAATGCGATCCCGTTACCTGGAGTGTTTATGCTCACTGA 778
Query 946 TGCAGGAACTTAGGTCAACCCCGGTAGGGCAGTTGAGCAAAGTCAAGGTCAAAGAGATGC 1005
|||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 779 TGCAGGAACTCAGGTCAACCCCGGTAGGGCAGTTGAGCAAAATCAAAGTCAAAGAGATGC 838
Query 1006 TTGCGGTTCTCAAAGACTTGGAGTCTGTGAACATTGAAGTAGCTTGGCTACGTTCTGTTC 1065
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 839 TTGCGGTTCTCAAAGACTTGGAGTCTGTGAACATCGAAGTGGCTTGGCTACGTTCTGTTC 898
Query 1066 TTGAAGAGTTTGCGCAGTCTCAAGAAGATGTAGAAAATGAGAAAGAGAGGCATGATGGTT 1125
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 899 TTGAAGAGTTTGCGCAGTCTCTAGAAGATGCAGAAAATGAGAAAGAGAGGCATGATGGTT 958
Query 1126 TAGTGAAGGCTAAGAGAGAAGAGCTTGAGGCTCAAGAAACGGATTTGGTTAGGATGGAGA 1185
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TAGTGAAGGCTAAGAAAGAAGAGCTTGAGGCTCAAGAAACGGATTTGGTTAGGATGGAGA 1018
Query 1186 AGGAAGTGGTGGAAGTGAAGCGGCGGATTGAGGAGACGCGGGCTCAGATGGTTGAGATCG 1245
||||||||| ||||| || || |||||||||||||||||||||||||||||| ||||| |
Sbjct 1019 AGGAAGTGGCGGAAGCGAGGCTGCGGATTGAGGAGACGCGGGCTCAGATGGTCGAGATTG 1078
Query 1246 AAGCAGAACGGTTGAGGATGGAGAAAATGGGATTCAAAATGGAGAAATTTAAAGGGAAAT 1305
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AAGCAGAACGGTCGAGGTTGGAGAAAATGGGATTCAAAATGGAGAAATTTAAAGGGAAAT 1138
Query 1306 CGTTTATAGATGAGCTTCTGTGA 1328
|||||||||||||||||||||||
Sbjct 1139 CGTTTATAGATGAGCTTCTGTGA 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5