BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35120.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944384 jgi|Araly1|944384|scaffold_700613.1 1107 0.0
Ahg944385 jgi|Araly1|944385|scaffold_700614.1 760 0.0
Ahg944383 jgi|Araly1|944383|scaffold_700612.1 86.1 5e-16
> Ahg944384 jgi|Araly1|944384|scaffold_700613.1
Length=1240
Score = 1107 bits (599), Expect = 0.0
Identities = 756/831 (91%), Gaps = 13/831 (2%)
Strand=Plus/Plus
Query 1 ATGGACACCGCCAAAGTAGAACCACCTCAGGAAACGAAGAAGACGATTCTCACAGCTCAA 60
||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||
Sbjct 21 ATGGACACCGCCAAAGTAGAAGAACCGCAGGAAACGAAGAAGACGACTCTTACAGCTCAA 80
Query 61 ACTCCATTATCTATGTCGATTTCATCACTTCCAGATGAAATCGTTTTAAGTTTCTTAGCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 ACTCCATTATCTATGTCGATTTCATCACTTCCAGATGAAATCGTTTTAAGTTTCTTAGCC 140
Query 121 CTGATCTCTAAATCGTACTACCGTTCCCTCTCTTTAGTCTCCAAAAGCTTTTACTCTCTT 180
| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 141 CGGATCTCTAAATCTTACTACCGTTCCCTCTCTTTAGTCTCCAAGAGCTTTTACGCTCTT 200
Query 181 CTCTCTTCTACAGAGATCTACGCGGCCCGATCCCACATCGGAGCGACAGAGCCTTGCC-C 239
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| |
Sbjct 201 CTCTCTTCTACAGAGATCTACGCGGCCCAATCCCACATCGGAGCCACAGAGCCTCGCCTC 260
Query 240 GTACGTGTGCCTGTGGTTACCCAAAAAACATCGCTGGTTCACCCTAGCCGAGATTGAGGG 299
||||||||||||||||||| ||| || |||||||||||||| || ||||||||||||||
Sbjct 261 -TACGTGTGCCTGTGGTTACTCAACAAGCATCGCTGGTTCACTCTCGCCGAGATTGAGGG 319
Query 300 TAAACTAAGTTTAGAACCGGTAAGGCTCTCTTCCTC-TTATCCTCGTACTCGAGTAAACT 358
| |||||||| ||| |||||||| |||||||||||| || |||| ||||||| ||||||
Sbjct 320 TGAACTAAGTCTAGTACCGGTAAAGCTCTCTTCCTCGTT-TCCTTTTACTCGATTAAACT 378
Query 359 CAACCACTGTAGCTGCTGGTACCGAAATCTACAAAATCGGCGGAACTGTCAAGGGCAAGC 418
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 379 CAACCACTGTAGCTGCTGGTTCCGAAATCTACAAAATCGGCGGAACTGTCAAGGGAAAGC 438
Query 419 GATCCAGAGCTGTTTTTGTACTTGA-TTGTTGGACTCACAGGTGGCGTCGTGCTCCTAAC 477
||||||||| ||||||||||| || |||| ||||||||||||||||| |||||||||
Sbjct 439 CATCCAGAGCCGTTTTTGTACT-GAATTGTCAGACTCACAGGTGGCGTCATGCTCCTAAG 497
Query 478 ATGAGAG-TGTCAAGGGTAGGCGCCAAGTCTTGTTTTTTAGACGGAAATATATATGTAAT 536
|||| || ||||||||||| ||| |||||||||||||||||||| || |||||||||||
Sbjct 498 ATGA-AGGTGTCAAGGGTACACGCAAAGTCTTGTTTTTTAGACGGGAAGATATATGTAAT 556
Query 537 AGGAGGATGCAGAAAGAGTGAGGAAGAATCCATGAATTGTGGTGAAGTTTTCGACCTAAA 596
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 557 GGGAGGATGCAGAAAGAGTGAGGAAGAATCCATGAATTGGGGTGAGGTTTTCGACCTAAA 616
Query 597 GACTCAGA-CTTGGAATCCGCTGCCTAGCCCTAGTGTTAATTATGCCGTCCATTCGAATC 655
||||| || ||||||| ||| ||||||||||||||| | | ||||||| |||||||||
Sbjct 617 GACTC-GAACTTGGAAGCCGTTGCCTAGCCCTAGTG--A-TGGTGCCGTCGATTCGAATC 672
Query 656 ACAAAGTTGCAGTTTCTGGAGAAAGGCTATACGTAATCACCAAGCGTAACAACTATGCAT 715
||||||| ||||||| ||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 673 ACAAAGTAGCAGTTTTTGGAGAAAGGCTATACGTAATCACCAAGCATAAAAAATATGCAT 732
Query 716 ATGATCCGAATGAAGGAAGATGGCTACCAGACGTGGGGTCTGTGGATTTACAACCCATAA 775
|||||||||| ||||||||||||||| |||| ||||||| ||||||| || |||| ||||
Sbjct 733 ATGATCCGAAAGAAGGAAGATGGCTAGCAGAGGTGGGGTTTGTGGATCTAGAACCTATAA 792
Query 776 CTGGACCTTGGTCCGGCGGTATAGAAAAAGTTATGAAACCTATAACTGGAC 826
||||| || ||||||| || ||||||||||||||| |||||||||||||||
Sbjct 793 CTGGAACTCGGTCCGGTGGCATAGAAAAAGTTATGCAACCTATAACTGGAC 843
Score = 185 bits (100), Expect = 5e-46
Identities = 147/169 (87%), Gaps = 5/169 (3%)
Strand=Plus/Plus
Query 1006 ATTCGCAGCCAAGAGAAGGA-AATTTGGTGTGCTGTGATTAGGTTGGAGGAGCGTATG-T 1063
|||| ||| ||||| |||| |||||||||||| |||||| ||||||||||||||||| |
Sbjct 1053 ATTCACAGTGAAGAG-AGGACAATTTGGTGTGCGGTGATTCGGTTGGAGGAGCGTATGTT 1111
Query 1064 --CTTATTTCGGACCCCAGATTTGGGGGGAGGTTGAGAGCTGCAATGTTGTTGTGCCTAG 1121
| |||| |||||| ||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1112 ACCCCATTTTGGACCCTGGATCTGCGGGGAGGTTGAGAGCTGTAATGTTGTTGTGCCTAG 1171
Query 1122 CGTCCCCAAGTCTTATCAGCTCTCAAGTTGCCAATGTGTTTCGGTCTGA 1170
|||||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct 1172 CGTCCCCAAGTCTTATAAGCTCTCAAGCTGCCAATGTGTTTTTGTCTGA 1220
Score = 102 bits (55), Expect = 5e-21
Identities = 79/90 (88%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 883 GGTTTGGATGTTCTATACGATAAGCGTGG--TT-GTGGCTACCGTACGATTCAGTTAGTT 939
|||||| ||| ||||||||| |||||||| || | |||||||||||| ||||||||
Sbjct 954 GGTTTGAATGATCTATACGAAAAGCGTGGTTTTCATTATTACCGTACGATTAAGTTAGTT 1013
Query 940 AACTATGGTGGGAAACTGTTAATTATATGG 969
||||||||||||||||||||||||||||||
Sbjct 1014 AACTATGGTGGGAAACTGTTAATTATATGG 1043
> Ahg944385 jgi|Araly1|944385|scaffold_700614.1
Length=1282
Score = 760 bits (411), Expect = 0.0
Identities = 503/548 (92%), Gaps = 4/548 (1%)
Strand=Plus/Plus
Query 289 GAGATTGAGGGTAAACTAAGTTTAGAACCGGTAAGGCTCTCTTCCTCTTATCCTCGTACT 348
|||||||||||| || ||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 342 GAGATTGAGGGTGAATTAAGTTTAGTACCGGTAAGGCTCTCTTCCTCCAATCCTCCCGCT 401
Query 349 CGAG-TAAACTCAACCACTGTAGCTGCT-GGTACCGAAATCTACAAAATCGGCGGAACTG 406
|| | |||| |||||||||||||||| | ||| ||||||||||| ||||||||||||| |
Sbjct 402 CG-GTTAAAGTCAACCACTGTAGCTG-TCGGTTCCGAAATCTACCAAATCGGCGGAACCG 459
Query 407 TCAAGGGCAAGCGATCCAGAGCTGTTTTTGTACTTGATTGTTGGACTCACAGGTGGCGTC 466
|||| ||||||||||| | ||| ||| ||| ||||||||| | | ||| | ||||| |
Sbjct 460 TCAACGGCAAGCGATCTAAAGCCGTTGGTGTGCTTGATTGTCGAAGTCATACATGGCGAC 519
Query 467 GTGCTCCTAACATGAGAGTGTCAAGGGTAGGCGCCAAGTCTTGTTTTTTAGACGGAAATA 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 520 GTGCTCCTAACATGAGAGTGTCAAGGGTAGGCGCCAAGTCTTGTTTTTTAGACGGACATA 579
Query 527 TATATGTAATAGGAGGATGCAGAAAGAGTGAGGAAGAATCCATGAATTGTGGTGAAGTTT 586
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 580 TATATGTAATAGGAGGATGCAGAAAGAGTGAGGAAGAATCCAAGAATTGGGGTGAGGTTT 639
Query 587 TCGACCTAAAGACTCAGACTTGGAATCCGCTGCCTAGCCCTAGTGTTAATTATGCCGTCC 646
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 640 TCGACCTAAAGACTCAGACTTGGAATCCATTGCCTAGCCCTAGTGATAATTATGCCGTGG 699
Query 647 ATTCGAATCACAAAGTTGCAGTTTCTGGAGAAAGGCTATACGTAATCACCAAGCGTAACA 706
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 700 ATTCGAATCACAAAGTTGCAGTTTTTGGAGAAAGGCTATACGTAATCACCAAGCATAACA 759
Query 707 ACTATGCATATGATCCGAATGAAGGAAGATGGCTACCAGACGTGGGGTCTGTGGATTTAC 766
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 760 ACTATGCATATGCTCCGAATGAAGTAAGATGGCTACCAGACGTGGGGTCTGTGGATCTAC 819
Query 767 AACCCATAACTGGACCTTGGTCCGGCGGTATAGAAAAAGTTATGAAACCTATAACTGGAC 826
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 820 AACCCATAACTGGACCTTGGTGCGGCGGTATAGAAAAAGTTATGAAACCTATAACTGGAC 879
Query 827 GACCTTGG 834
||||||||
Sbjct 880 GACCTTGG 887
Score = 481 bits (260), Expect = 6e-135
Identities = 315/341 (92%), Gaps = 6/341 (2%)
Strand=Plus/Plus
Query 833 GGAAGTACACGTGGTATAGCTCAAGTCATCGAGCGTGGCAAAGAGTT-ATGGGTTTGGAT 891
||||||||| ||||||||||||||||||| ||||||||| ||||||| | |||||| ||
Sbjct 925 GGAAGTACAGGTGGTATAGCTCAAGTCATGGAGCGTGGCTAAGAGTTGA-AGGTTTGCAT 983
Query 892 GTTCTATACGATAAGCGTGGTTGTG-GCTACCGTACGATTCAGTTAGTTAACTATGGTGG 950
| |||||||| ||||||| ||| || | ||||||||||||||||||||||||||||||||
Sbjct 984 GATCTATACGCTAAGCGTCGTTTTGAG-TACCGTACGATTCAGTTAGTTAACTATGGTGG 1042
Query 951 GAAACTGTTAATTATATGG-AGCGAGTGGATCATGATTCTAGACGGGTATTCCCTTATTC 1009
||||||||||||||||||| | ||||||| ||||||| |||||| || ||| ||||||||
Sbjct 1043 GAAACTGTTAATTATATGGGA-CGAGTGGGTCATGATCCTAGACAGGAATTACCTTATTC 1101
Query 1010 GCAGCCAAGAGAAGGAAATTTGGTGTGCTGTGATTAGGTTGGAGGAGCGTATGTCTTATT 1069
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GCAGCCAAGACAAGCAAATTTGGTGTGCTGTGATTAGGTTGGAGGAGCGTATGTCTTATT 1161
Query 1070 TCGGACCCCAGATTTGGGGGGAGGTTGAGAGCTGCAATGTTGTTGTGCCTAGCGTCCCCA 1129
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TGGGACCCCAGATTTGGGGGCAGGTTGAGAGCTGCAATGTTGTTGTGCCTAGCGTCCCCA 1221
Query 1130 AGTCTTATCAGCTCTCAAGTTGCCAATGTGTTTCGGTCTGA 1170
|||||||| |||||||||| |||||||||||||||||||||
Sbjct 1222 AGTCTTATAAGCTCTCAAGCTGCCAATGTGTTTCGGTCTGA 1262
Score = 425 bits (230), Expect = 3e-118
Identities = 265/282 (94%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 1 ATGGACACCGCCAAAGTAGAACCACCTCAGGAAACGAAGAAGACGATTCTCACAGCTCAA 60
||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||
Sbjct 21 ATGGACACCGCCAAAGTAGAAGAACCGCAGGAAACGAAGAAGACGACTCTTACAGCTCAA 80
Query 61 ACTCCATTATCTATGTCGATTTCATCACTTCCAGATGAAATCGTTTTAAGTTTCTTAGCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 ACTCCATTATCTATGTCGATTTCATCACTTCCAGATGAAATCGTTTTAAGTTTCTTAGCC 140
Query 121 CTGATCTCTAAATCGTACTACCGTTCCCTCTCTTTAGTCTCCAAAAGCTTTTACTCTCTT 180
| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 141 CGGATCTCTAAATCTTACTACCGTTCCCTCTCTTTAGTCTCCAAGAGCTTTTACGCTCTT 200
Query 181 CTCTCTTCTACAGAGATCTACGCGGCCCGATCCCACATCGGAGCGACAGAGCCTTGCC-C 239
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| |
Sbjct 201 CTCTCTTCTACAGAGATCTACGCGGCCCGACCCCACATCGGAGCCACAGAGCCTCGCCTC 260
Query 240 GTACGTGTGCCTGTGGTTACCCAAAAAACATCGCTGGTTCAC 281
||||||||||||||||||| ||| || ||||||||||||||
Sbjct 261 -TACGTGTGCCTGTGGTTACTCAACAAGCATCGCTGGTTCAC 301
> Ahg944383 jgi|Araly1|944383|scaffold_700612.1
Length=1106
Score = 86.1 bits (46), Expect = 5e-16
Identities = 76/90 (84%), Gaps = 4/90 (4%)
Strand=Plus/Plus
Query 882 GGGTTTGGA-TGTTCTATACGAT-AAGCGTGGTTGTGGCTACCGTACGATTCAGTTAGTT 939
|||||| || || ||| || || ||||||| | || ||||| |||||||| ||||||
Sbjct 924 GGGTTT-GAGTGATCTGTA-TATGAAGCGTGCTAGTAATTACCGCACGATTCAATTAGTT 981
Query 940 AACTATGGTGGGAAACTGTTAATTATATGG 969
||||||||||||||||||||||||||||||
Sbjct 982 AACTATGGTGGGAAACTGTTAATTATATGG 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5