BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35140.1
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491138 jgi|Araly1|491138|fgenesh2_kg.7__571__AT4G35140.1 2608 0.0
> Ahg491138 jgi|Araly1|491138|fgenesh2_kg.7__571__AT4G35140.1
Length=1739
Score = 2608 bits (1412), Expect = 0.0
Identities = 1643/1752 (94%), Gaps = 26/1752 (1%)
Strand=Plus/Plus
Query 30 CTTCGTCTTCTCTCTGTGGGACTTCTGAAGTAGTAATTTCACGGCGAGATACAGAGCAAT 89
|||| |||||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCTTCTCTCTCTGGGACCTCCGAAGTAGTAATTTCACGGCGAGATACAGAGCAAT 60
Query 90 TAGAGAATCTTCTCTCTGGTC--TA---T--T--ACCGTGAAAAACTTTCTCCTATTATA 140
|||||||| |||||||||||| || | | ||||||||||||||||||| | | ||
Sbjct 61 TAGAGAATATTCTCTCTGGTCTATAGCTTCATCAACCGTGAAAAACTTTCTCC-AAT-TA 118
Query 141 AATTTTATTTCATAGGAAGATGAGTGAGAAAGCGAGGAGAGGTCGATCAAACTTT-AATG 199
|| ||||||||||||||||||||||||||||| || |||||||| ||| ||| || |
Sbjct 119 CCGTTGATTTCATAGGAAGATGAGTGAGAAAGCGAAGAAAGGTCGATTAAA-TTTCAACG 177
Query 200 GACTACATCACCCTGTTGTTGATTTTTGGCGACGAGAGGTCGGTGGAATCTCCTCTCGTA 259
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 178 GATTACATCACCCTGTTGTTGATTTCTGGCGACGAGAGGTCGGTGGAATCTCCTCTCGTA 237
Query 260 ATTTCTCCAATCGCTTCTCCGCCTCCGAGAATTTGGTTCTGCGTTTAGAGATATACAAGA 319
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 238 ATTTCTCCAATCGCTTCTCCGCCTCCGAGAATTTGGTTCTGCGTCTAGAGATATACAAGA 297
Query 320 AGCTAGAGAAGCACAAAGGGTGTGTAAACACCGTGAGTTTCAATGCCGAAGGAGATGTTC 379
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 298 AGCTTGAGAAGCACAAAGGGTGTGTAAACACAGTGAGTTTCAATGCAGAAGGAGATGTTC 357
Query 380 TGATATCTGGTTCCGATGATCGGCGTGTCGTTCTTTGGGATTGGCAACTTGGGAATGTGA 439
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 358 TGATTTCGGGTTCCGATGATCGGCGTGTCGTTCTTTGGGATTGGCAACTTGGGAATGTTA 417
Query 440 AGCTTTCCTTCCATTCAGGACACGCTAATAACGTTTTTCAAGCAAAGTTTATGCCTTTCT 499
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 418 AGCTTTCCTTCCATTCAGGACACGCTAATAACGTATTTCAAGCAAAGTTTATGCCTTTCT 477
Query 500 CTGATGATCGAACGATAGTAACCTGTGCTGCTGATGGAATGGTTCGGCGTGCAAGTATTC 559
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTGATGATCGAACCATTGTTACCTGTGCTGCTGATGGAATGGTTCGGCGTGCAAGTATTC 537
Query 560 TTGAGGGTGATAAAGTGGAGACGTCTTTCTTGGGATTGCATCAAGGACGAGCTCATAAAC 619
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
Sbjct 538 TTGAGGGTGATAAAGTTGAGACGTCTTTCTTGGGATTGCATCAAGGAAGAGCTCATAAGC 597
Query 620 TATGTATAGAGCCAGGAAACCCACATATATTTTACACATGTGGTGAAGATGGATTAGTAC 679
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 598 TATGTATAGAGCCAGGAAACCCACATATATTTTATACATGTGGTGAAGATGGATTAGTAC 657
Query 680 AACGTTTTGATCTGAGGACTGAAGCCCCTACAGAACTTTTCACTTGCCGATCAGTTGATC 739
|||| |||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 658 AACGATTTGATCTAAGGACTGAAGCCCCTACAGAACTTTTCACTTGTCAATCAGTTGATC 717
Query 740 CTAGGAGGAGGAACATGGACGCCATCCAGCTAAATGCGATTGCGATCGACCCGAGAAATT 799
||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||
Sbjct 718 CTAGGAGGAGGAACATGGAAGCCATCCAGCTAAACGCTATTGCGATTGACCCGAGAAATT 777
Query 800 CTAACCTCTTTGCTGTTGGGGGAATGGAAGAGTACGCTCGTCTTTATGATATCCGTAGAT 859
|||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 778 CTAACCTCTTTGCTATTGGGGGAATGGACGAGTACGCTCGTCTTTATGATGTCCGTAGAT 837
Query 860 TTCAGGGTGAGGGTTTAAATGGTTTTACCCGAGCTGCAGATCACTTTTGTCCTCCACATC 919
|||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 838 TTCAGGGTGACAGTTCAAATGGTTTTACCCGAGCCGCAGATCACTTTTGCCCTCCACATC 897
Query 920 TTATTGGCAATGAAGATGTTGGAATAACGGGGTTGGCTTTCTCAGAGCAAAGCGAGCTTC 979
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 898 TTATTGGCAATGAAGAAGTTGGAATAACGGGTTTGGCTTTCTCAGAGCAAAGCGAGCTTC 957
Query 980 TTGTTTCATACAATGATGAGTTCATCTATCTCTTCACACCCGGTATGGGATTAGGGTCTA 1039
|| |||| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 958 TTATTTCGTACAATGATGAATTCATCTATCTTTTCACACCCGATATGGGATTAGGGTCTA 1017
Query 1040 ACCCTATCCCATCCTCCCCGATATCCAAGAGTCCTGT-ATCAAAATCAGAATCATCTTCT 1098
||||||||||||||||||||||||||||||| ||| | | |||||||||||| |||||
Sbjct 1018 CCCCTATCCCATCCTCCCCGATATCCAAGAGTAGTGTCA-CGAAATCAGAATCAGCTTCT 1076
Query 1099 TCCCCAAAAGATGAGAACGAACACTCAGTTTCTTTGGTTTATAAGGGGCACAAGAACTGT 1158
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1077 TCCCCAAAAGATGAGAACGAACACTCAGTTCCTTTGGTTTATAAGGGGCACAAGAACTGT 1136
Query 1159 GAGACAGTTAAGGGTGTGAACTTTTTTGGACCTCGGTCTGAATATGTGGTTAGTGGGTCA 1218
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GAGACGGTTAAGGGTGTGAATTTTTTTGGACCTCGGTCTGAATATGTGGTTAGTGGGTCA 1196
Query 1219 GACTGTGGGAGGATATTTATTTGGAGGAAAAAGGGTGGGGAGCTTATCCGTGTTATGGAA 1278
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1197 GACTGTGGGCGGATATTTATTTGGAGGAAAAAAGGTGGGGAGCTTATCCGTGTTATGGAA 1256
Query 1279 GCAGATAGGCATGTAGTTAACTGTATTGAGCCTCATCCACATATTCCTGTGCTTGCTAGC 1338
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1257 GCAGATAGGCATGTGGTTAACTGTATTGAGCCTCATCCGCATATTCCTGTGCTTGCTAGC 1316
Query 1339 AGTGGAATTGAAAGTGACATTAAGGTGTGGACGTCAAAGGCAGCTGAGAGAGCTACGTTA 1398
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGTGGAATTGAAAGTGACATCAAGGTGTGGACGTCAAAGGCAGCTGAGAGAGCTACGTTA 1376
Query 1399 CCTGAAAACATCGAACTGCGCAAGCGAACGCCTAGGGGATGGATGTATCGTGTCTCTTCA 1458
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1377 CCTGAAAACATCGAACTGCGCAAGCGAACGCCTAGGGGATGGATGTACCGTGTCTCTTCA 1436
Query 1459 CCGCATGAACTATTGGCGCAACTCTTCTCGCTGCAAAACCGAAGCAGTAGTAGTCCAGAG 1518
||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 1437 CCGCAGGAACTATTGGCACAACTCTTCTCGCTGCAAAGCCGGAGCAGTAGTAGCCCAGAG 1496
Query 1519 AGAGAAGGAGAATCTTCTTCAGCCACTGGAAGAGAACTTCTTGATCTTATCCTCACCTTC 1578
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1497 AGAGAAGGAGAATCATCTTCAGCCACTGGAAGAGAACTTCTTGATCTTATTCTTACCTTC 1556
Query 1579 AATGATCAGAGCGACGATGAAAATGCAACTGATGATGATGATGGTAATAGCCATGAAGAC 1638
|||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1557 AATGATCAGAGCGA---TGA---TGCAACTGATGATGAAGATGGTAATAGCCATGAAGAC 1610
Query 1639 TTCTTCTCTT-AAGAGAAAACACTCATCTGGAAGAatttgtaaata-tttttcagtccct 1696
|||||||||| || ||||||| | | ||| ||||||||||||||| |||||||||||||
Sbjct 1611 TTCTTCTCTTGAA-AGAAAACTC-C-TCTAAAAGAATTTGTAAATAATTTTTCAGTCCCT 1667
Query 1697 ttaaaaccttttttgtattttgatttaccacatggtttttCATTGTTCAATAAAGTCTCA 1756
|||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1668 TTAAAACCCTTTATGTATTTTGATTTACCACATGGTTTTTCATTGTTCAATTAAGTCTCA 1727
Query 1757 ACATTATATGTT 1768
||||||||||||
Sbjct 1728 ACATTATATGTT 1739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67914906835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5