BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35150.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328231 jgi|Araly1|328231|fgenesh1_pm.C_scaffold_7000458 929 0.0
Ahg491137 jgi|Araly1|491137|fgenesh2_kg.7__570__AT4G35150.1 833 0.0
> Ahg328231 jgi|Araly1|328231|fgenesh1_pm.C_scaffold_7000458
Length=1107
Score = 929 bits (503), Expect = 0.0
Identities = 606/656 (92%), Gaps = 6/656 (1%)
Strand=Plus/Plus
Query 326 TGCATGGTAAGGACTTGTGGGCGTTCGCACAGGATAATCTGTGCCACAGCCAGCTGATCA 385
|||| ||||||||| ||||| ||||||| |||||||||| || || |||| | ||||||
Sbjct 455 TGCACGGTAAGGACGTGTGGTCGTTCGCGCAGGATAATCCGTTCCTCAGCGATATGATCA 514
Query 386 ACGAGGCCATGGCTTGTGATGCAAGGCGCGTGGTGCCACGTGTAGCTGGAGCTTGTCAAG 445
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 515 ATGAGGCCATGGCTTGTGATGCAAGGCGCGTGGTGCCACGTGTAGCCGGAGCTTGTCACG 574
Query 446 GCTTGTTTGACGGCGTGGCT-ACGGTGGTTGACGTAGGAGGAGGTACCGGAGAGACGATG 504
|||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||||
Sbjct 575 GCTTGTTTGACGGCGTGG-TCACGGTGATTGACGTAGGAGGCGGTACCGGAGAGACGATG 633
Query 505 GGAATACTTGTAAAGGAGTTTCCTTGGATCAAAGGATTTAACTTTGACCTTCCTCATGTT 564
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 634 GGGATACTCGTAAAGGAGTTTCCTTGGATCAAAGGATTTAACTTTGATCTTCCTCATGTT 693
Query 565 ATTGAAGTTGCTCAAGTCTTGGACGGTGTTGAGAATGTTGAGGGCGATATGTTTGATTCT 624
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 694 ATTGAAGTTGCTCAAGTCTTGGACGGTGTCGAGAATGTTGAGGGCGATATGTTTGATTCT 753
Query 625 ATTCCGGCAAGCGACGCTGTTATCATCAAGTGGGTGTTACACGATTGGGGAGACAAAGAT 684
|| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 ATCCCCGCATGCGACGCTGTTATCATCAAGTGGGTGTTACACGATTGGGGAGACAAAGAC 813
Query 685 TGCATAAAGATATTGAAGAATTGCAAAGAAGCTGTTCTACCAAATATCGGCAAAGTGTTG 744
|||||||||||||||||||||||||||||||| || | |||||||| ||| |||||||||
Sbjct 814 TGCATAAAGATATTGAAGAATTGCAAAGAAGCGGTCCCACCAAATAACGGGAAAGTGTTG 873
Query 745 ATAGTGGAGT-GTGTTATCGGAGAGAAGAAAAACACGATGATAGCGGAAGAAAGAGATGA 803
||||| || | | || ||||||||||| ||||| |||||||||| ||| |||||||||||
Sbjct 874 ATAGTAGAATCG-GTGATCGGAGAGAATAAAAAGACGATGATAGTGGACGAAAGAGATGA 932
Query 804 CAAGTTAGAGCACGTGAGATTGCA-GCTTGACATGGTGATGATGGTTCACACAAGCACAG 862
|||||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||
Sbjct 933 CAAGTTAGAGCACGTGAGATTG-ATGCTTGATATGGTGATGATGGCTCACACAAGCACAG 991
Query 863 GCAAAGAACGAACTTTGAAAGAATGGGACTTTGTTCTTACAGAAGCTGGCTTTGCTCGAT 922
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 992 GCAAAGAACGAACTTTGAAAGAATGGGACTTTGTTCTTAAAGAAGCTGGTTTTGCTCGAT 1051
Query 923 ATGAGGTTAGAGACTTTGATGATGTTCAGTCTCTTATCATCGCATATCGATCTTAA 978
|||||||| | ||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1052 ATGAGGTTCGGGACATTGATGATGTTCAGTCTCTTATCATCGCGTATCGGTCTTAA 1107
Score = 459 bits (248), Expect = 2e-128
Identities = 306/334 (92%), Gaps = 4/334 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAAAGTAAAAGGAA-TTTATTAGATGAAGAAGCGAAAGCTTCTTTAGACATATG 59
|||||||||| ||||| ||| || ||||||||||||| ||||||||| ||||||||||
Sbjct 1 ATGGAAGAAACTAAAA-GAAGAGTACTAGATGAAGAAGCCAAAGCTTCTCTAGACATATG 59
Query 60 GAGATATGTTTTTGGGTTTGCAGATATTGCAGCTGCAAAGTGTGCCATTGATCTCAAAAT 119
||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 60 GAGGTATGTCTTTGGGTTTGCAGATATCGCAGCTGCAAAGTGTGCCATTGATCTTAAAAT 119
Query 120 ACCAGAAGCCATTGAAAACCATCCTTCGTCACAGCCCGTGACACTATCCGAACTCTCCTC 179
||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 120 ACCAGAAGCCATTGAAAACCATCCTTCTTCACAGCCCGTAACACTAGCCGAACTCTCCTC 179
Query 180 TGCCGTCTCTGCTTCTCCTTCACATCTCCGCCGTATAATGCGGTTTCTTGTGCACCAAGG 239
|||||||| || ||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 180 CGCCGTCTCCGCCTCTCCCTCACATCTCCGCCGTATAATGAGGTTTCTTGTACACCAAGG 239
Query 240 ACTCTTCAAAGAAGTCCCCACAAAAGATGGTTTAGCCACTGGCTACACTAACACGCCACT 299
| ||||||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 240 AATCTTCAAAGAAATCCCCACAAAAGATGGTTTAGCCACAGGCTACGCTAATACGCCACT 299
Query 300 CTCTCGCCGTATGATGATCACAAAAC-TGCATGG 332
|||||||||||||||||||||||||| || ||||
Sbjct 300 CTCTCGCCGTATGATGATCACAAAACGTG-ATGG 332
> Ahg491137 jgi|Araly1|491137|fgenesh2_kg.7__570__AT4G35150.1
Length=860
Score = 833 bits (451), Expect = 0.0
Identities = 506/533 (95%), Gaps = 1/533 (0%)
Strand=Plus/Plus
Query 426 TGTAGCTGGAGCTTGTCAAGGCTTGTTTGACGGCGTGGCTACGGTGGTTGACGTAGGAGG 485
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TGT-GCGGGAGCTTGTCACGGCTTGTTTGACGGCGTGGCTACGGTGGTTGACGTAGGAGG 383
Query 486 AGGTACCGGAGAGACGATGGGAATACTTGTAAAGGAGTTTCCTTGGATCAAAGGATTTAA 545
|||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 384 AGGTACGGGAGATACGATGGGGATACTTGTGAAGGAGTTTCCTTGGATCAAAGGATTCAA 443
Query 546 CTTTGACCTTCCTCATGTTATTGAAGTTGCTCAAGTCTTGGACGGTGTTGAGAATGTTGA 605
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 CTTTGATCTTCCTCATGTTATTGAAGTTGCTCAAGTCTTGGACGGTGTTGAGAATGTTGA 503
Query 606 GGGCGATATGTTTGATTCTATTCCGGCAAGCGACGCTGTTATCATCAAGTGGGTGTTACA 665
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 504 GGGCGATATGTTTGATTCTATTCCCGCATGCGACGCTGTTATCATCAAGTGGGTGTTACA 563
Query 666 CGATTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCAAAGAAGCTGTTCTACC 725
||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 564 CGACTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCAAAGAAGCTGTCCCACC 623
Query 726 AAATATCGGCAAAGTGTTGATAGTGGAGTGTGTTATCGGAGAGAAGAAAAACACGATGAT 785
|||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 624 AAATGTCGGCAAACTGTTGATAGTGGAGTGTGTTATCGGAGAGAAGAAAAATACTATGGT 683
Query 786 AGCGGAAGAAAGAGATGACAAGTTAGAGCACGTGAGATTGCAGCTTGACATGGTGATGAT 845
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 AGTAGAAGAAAGAGATGACAAGTTAGAGCACGTGAGATTGCAGCTTGACATGGTGATGAT 743
Query 846 GGTTCACACAAGCACAGGCAAAGAACGAACTTTGAAAGAATGGGACTTTGTTCTTACAGA 905
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 744 GGTTCACACAAGCACAGGGAAAGAACGAACTTTGAAAGAATGGGACTTTGTTCTTAAAGA 803
Query 906 AGCTGGCTTTGCTCGATATGAGGTTAGAGACTTTGATGATGTTCAGTCTCTTA 958
||||||||||||||||||||||||| | ||| |||||||| ||||||||||||
Sbjct 804 AGCTGGCTTTGCTCGATATGAGGTTCGGGACATTGATGATATTCAGTCTCTTA 856
Score = 355 bits (192), Expect = 3e-97
Identities = 204/210 (97%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 99 GTGTGCCATTGATCTCAAAATACCAGAAGCCATTGAAAACCATCCTTCGTCACAGCCCGT 158
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 GTGTGCCATTGATCTTAAAATACCAGAAGCCATTGAAAACCATCCTTCGTCACAGCCCGT 113
Query 159 GACACTATCCGAACTCTCCTCTGCCGTCTCTGCTTCTCCTTCACATCTCCGCCGTATAAT 218
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 GACACTAACCGAACGCTCCTCTGCCGTCTCTGCTTCTCCTTCACATCTCCGCCGTATAAT 173
Query 219 GCGGTTTCTTGTGCACCAAGGACTCTTCAAAGAAGTCCCCACAAAAGATGGTTTAGCCAC 278
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GAGGTTTCTTGTGCACCAAGGACTCTTCAAAGAAGTCCCCACAAAAGATGGTTTAGCCAC 233
Query 279 TGGCTACACTAACACGCCACTCTCTCGCCG 308
|| ||||||||||||||||||||||||||
Sbjct 234 AGGATACACTAACACGCCACTCTCTCGCCG 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5