BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35160.1
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328231 jgi|Araly1|328231|fgenesh1_pm.C_scaffold_7000458 1773 0.0
Ahg491137 jgi|Araly1|491137|fgenesh2_kg.7__570__AT4G35150.1 739 0.0
> Ahg328231 jgi|Araly1|328231|fgenesh1_pm.C_scaffold_7000458
Length=1107
Score = 1773 bits (960), Expect = 0.0
Identities = 1060/1109 (96%), Gaps = 4/1109 (0%)
Strand=Plus/Plus
Query 46 ATGGAAGACAA-TAAAAGAAAAGTATTAGATGAAGAAGCGAAAGCTTCTCTAGACATATG 104
|||||||| || |||||||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGAAGA-AACTAAAAGAAGAGTACTAGATGAAGAAGCCAAAGCTTCTCTAGACATATG 59
Query 105 GAAGTATGTCTTTGGGTTTGCAGATATAGCAGCTGCAAAGTGTGCCATTGATCTTAAAAT 164
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 GAGGTATGTCTTTGGGTTTGCAGATATCGCAGCTGCAAAGTGTGCCATTGATCTTAAAAT 119
Query 165 ACCAGAAGCCATTGAAAACCATCCTTCTTCACAGCCCGTAACACTAGCCGAACTCTCCTC 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACCAGAAGCCATTGAAAACCATCCTTCTTCACAGCCCGTAACACTAGCCGAACTCTCCTC 179
Query 225 CGCCGTCTCCGCCTCTCCCTCGCATCTCCGCCGTATAATGAGGTTTCTTGTACACCAAGG 284
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGCCGTCTCCGCCTCTCCCTCACATCTCCGCCGTATAATGAGGTTTCTTGTACACCAAGG 239
Query 285 AATCTTTAAAGAAATCCCCACAAAAGATGGTTTAGCTACAGGCTACGTTAATACGCCACT 344
|||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 240 AATCTTCAAAGAAATCCCCACAAAAGATGGTTTAGCCACAGGCTACGCTAATACGCCACT 299
Query 345 CTCTCGCCGTTTGATGATCACAAGACGTGATGGAAAATCGCTGGCTCCTTTTGTTCTCTT 404
|||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 300 CTCTCGCCGTATGATGATCACAAAACGTGATGGCAAATCGCTGGCTCCTTTTGTTCTCTT 359
Query 405 CGAAACAACTCCCGAGATGCTCGCTCCATGGTTGAGACTTAGCTCAGTCGTTTCTTCGCC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGAAACAACTCCCGAGATGCTCGCTCCATGGTTGAGACTTAGCTCAGTCGTTTCTTCGCC 419
Query 465 GGTCAACGGTTCAACTCCACCACCGTTTGATGCAGTGCACGGTAAGGACGTGTGGTCGTT 524
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTCAACGGTTCAGCTCCACCACCGTTTGATGCAGTGCACGGTAAGGACGTGTGGTCGTT 479
Query 525 CGCGCAGGATAATCCCTTCCTCAGCGATATGATCAATGAGGCCATGGCTTGTGATGCAAG 584
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGCGCAGGATAATCCGTTCCTCAGCGATATGATCAATGAGGCCATGGCTTGTGATGCAAG 539
Query 585 GCGCGTGGTGCCACGTGTAGCCGGAGCTTGTCACGGCTTGTTTGATGGCGTGA-CTACGA 643
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 540 GCGCGTGGTGCCACGTGTAGCCGGAGCTTGTCACGGCTTGTTTGACGGCGTGGTC-ACGG 598
Query 644 TGGTTGACGTAGGAGGTGGTACGGGAGAGACGATGGGGATGCTTGTGAAGGAGTTTCCTT 703
|| ||||||||||||| ||||| ||||||||||||||||| || || |||||||||||||
Sbjct 599 TGATTGACGTAGGAGGCGGTACCGGAGAGACGATGGGGATACTCGTAAAGGAGTTTCCTT 658
Query 704 GGATCAAAGGATTTAACTTTGATCTTCCTCATGTCATTGAAGTTGCTGAAGTCTTGGACG 763
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 659 GGATCAAAGGATTTAACTTTGATCTTCCTCATGTTATTGAAGTTGCTCAAGTCTTGGACG 718
Query 764 GTGTTGAGAATGTTGAGGGCGATATGTTTGATTCTATTCCGGCTTGCGACGCCATTTTCA 823
|||| |||||||||||||||||||||||||||||||| || || |||||||| || |||
Sbjct 719 GTGTCGAGAATGTTGAGGGCGATATGTTTGATTCTATCCCCGCATGCGACGCTGTTATCA 778
Query 824 TCAAGTGGGTGTTACACGATTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCA 883
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 779 TCAAGTGGGTGTTACACGATTGGGGAGACAAAGACTGCATAAAGATATTGAAGAATTGCA 838
Query 884 AAGAAGCGGTCCCTCCAAATATCGGAAAAGTGTTGATAGTGGAATCGGTGATCGGAGAGA 943
||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 839 AAGAAGCGGTCCCACCAAATAACGGGAAAGTGTTGATAGTAGAATCGGTGATCGGAGAGA 898
Query 944 ATAAAAAGACGATGATAGTGGACGAACGAGATGAAAAGTTAGAGCACGTGAGATTGATGC 1003
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 899 ATAAAAAGACGATGATAGTGGACGAAAGAGATGACAAGTTAGAGCACGTGAGATTGATGC 958
Query 1004 TTGATATGGTGATGATGGCTCACACAAGCACAGGCAAAGAACGGACTTTGAAAGAATGGG 1063
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 TTGATATGGTGATGATGGCTCACACAAGCACAGGCAAAGAACGAACTTTGAAAGAATGGG 1018
Query 1064 ACTTTGTTCTTAAAGAAGCTGGCTTTGCTCGATATGAGGTTAGGGACATTGATGATGTTC 1123
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1019 ACTTTGTTCTTAAAGAAGCTGGTTTTGCTCGATATGAGGTTCGGGACATTGATGATGTTC 1078
Query 1124 AGAGTCTTATAATCGCGTATCGGTCTTAA 1152
|| |||||| ||||||||||||||||||
Sbjct 1079 AGTCTCTTATCATCGCGTATCGGTCTTAA 1107
> Ahg491137 jgi|Araly1|491137|fgenesh2_kg.7__570__AT4G35150.1
Length=860
Score = 739 bits (400), Expect = 0.0
Identities = 491/535 (92%), Gaps = 5/535 (1%)
Strand=Plus/Plus
Query 600 TGTAGCCGGAGCTTGTCACGGCTTGTTTGATGGCGTGACTACGATGGTTGACGTAGGAGG 659
||| || ||||||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 325 TGT-GCGGGAGCTTGTCACGGCTTGTTTGACGGCGTGGCTACGGTGGTTGACGTAGGAGG 383
Query 660 TGGTACGGGAGAGACGATGGGGATGCTTGTGAAGGAGTTTCCTTGGATCAAAGGATTTAA 719
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 384 AGGTACGGGAGATACGATGGGGATACTTGTGAAGGAGTTTCCTTGGATCAAAGGATTCAA 443
Query 720 CTTTGATCTTCCTCATGTCATTGAAGTTGCTGAAGTCTTGGACGGTGTTGAGAATGTTGA 779
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 444 CTTTGATCTTCCTCATGTTATTGAAGTTGCTCAAGTCTTGGACGGTGTTGAGAATGTTGA 503
Query 780 GGGCGATATGTTTGATTCTATTCCGGCTTGCGACGCCATTTTCATCAAGTGGGTGTTACA 839
|||||||||||||||||||||||| || |||||||| || |||||||||||||||||||
Sbjct 504 GGGCGATATGTTTGATTCTATTCCCGCATGCGACGCTGTTATCATCAAGTGGGTGTTACA 563
Query 840 CGATTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCAAAGAAGCGGTCCCTCC 899
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 564 CGACTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCAAAGAAGCTGTCCCACC 623
Query 900 AAATATCGGAAAAGTGTTGATAGTGGAATCG-GTGATCGGAGAGAATAAAAAGACGATGA 958
|||| |||| ||| ||||||||||||| | | || ||||||||||| ||||| || |||
Sbjct 624 AAATGTCGGCAAACTGTTGATAGTGGAGT-GTGTTATCGGAGAGAAGAAAAATACTATGG 682
Query 959 TAGTGGACGAACGAGATGAAAAGTTAGAGCACGTGAGATTG-ATGCTTGATATGGTGATG 1017
|||| || ||| ||||||| ||||||||||||||||||||| | |||||| |||||||||
Sbjct 683 TAGTAGAAGAAAGAGATGACAAGTTAGAGCACGTGAGATTGCA-GCTTGACATGGTGATG 741
Query 1018 ATGGCTCACACAAGCACAGGCAAAGAACGGACTTTGAAAGAATGGGACTTTGTTCTTAAA 1077
|||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 742 ATGGTTCACACAAGCACAGGGAAAGAACGAACTTTGAAAGAATGGGACTTTGTTCTTAAA 801
Query 1078 GAAGCTGGCTTTGCTCGATATGAGGTTAGGGACATTGATGATGTTCAGAGTCTTA 1132
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 802 GAAGCTGGCTTTGCTCGATATGAGGTTCGGGACATTGATGATATTCAGTCTCTTA 856
Score = 289 bits (156), Expect = 5e-77
Identities = 192/210 (91%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 144 GTGTGCCATTGATCTTAAAATACCAGAAGCCATTGAAAACCATCCTTCTTCACAGCCCGT 203
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 54 GTGTGCCATTGATCTTAAAATACCAGAAGCCATTGAAAACCATCCTTCGTCACAGCCCGT 113
Query 204 AACACTAGCCGAACTCTCCTCCGCCGTCTCCGCCTCTCCCTCGCATCTCCGCCGTATAAT 263
|||||| |||||| |||||| |||||||| || ||||| || |||||||||||||||||
Sbjct 114 GACACTAACCGAACGCTCCTCTGCCGTCTCTGCTTCTCCTTCACATCTCCGCCGTATAAT 173
Query 264 GAGGTTTCTTGTACACCAAGGAATCTTTAAAGAAATCCCCACAAAAGATGGTTTAGCTAC 323
|||||||||||| ||||||||| |||| |||||| |||||||||||||||||||||| ||
Sbjct 174 GAGGTTTCTTGTGCACCAAGGACTCTTCAAAGAAGTCCCCACAAAAGATGGTTTAGCCAC 233
Query 324 AGGCTACGTTAATACGCCACTCTCTCGCCG 353
||| ||| ||| |||||||||||||||||
Sbjct 234 AGGATACACTAACACGCCACTCTCTCGCCG 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51694675452
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5