BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35165.1
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944378 jgi|Araly1|944378|scaffold_700607.1 604 2e-172
Ahg951153 jgi|Araly1|951153|scaffold_803040.1 204 9e-52
> Ahg944378 jgi|Araly1|944378|scaffold_700607.1
Length=407
Score = 604 bits (327), Expect = 2e-172
Identities = 383/409 (94%), Gaps = 8/409 (2%)
Strand=Plus/Plus
Query 150 CAAATAGAAGTCAAAGATAGATGGGAAACAATTCAAGAGCTATTTTCTCTTTATTCTTGG 209
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1 CAAATAGAAGTCAAAGAGAGATGGGAAACAATCCAAGAGCTATTTTCTCTTTATTCTTAG 60
Query 210 TTGTAGCCTTATGTGCTGCAATTTTAATCACCCCCGGAATAGCTCATGATGAAC-AACCA 268
|||||||| |||||||||||||||||||||| || |||||||||||||| | || || ||
Sbjct 61 TTGTAGCCATATGTGCTGCAATTTTAATCACTCCTGGAATAGCTCATGACG-ACAAAGCA 119
Query 269 CCGCCCCGCTCACAATTTCCACCGGATTTTCCTATTGATGTGGAAAAATGTTGGGCATCA 328
||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 120 CCGCCGCGCTCACAATTTCCACCGGATTTTCCTATTGATTTGGAAAAATGTTGGTCATCA 179
Query 329 CTTTTCAATACTCAGGGATGCGTATTCGAACTTTTAAAGTCAGTTTTTTCTGGTCAGTTT 388
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 CTTTTCAATACTCAGGGATGCGTATTCGAACTTTTGAAGTCAGTTTTTTCTGGTCAGTTT 239
Query 389 GGAAATGTTGGAGTTGCATGTTGCAAAGCATTGTCGACCATAGATGCTAACTGTTGGCCT 448
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 GGAAATGTTGGAGTTGCATGTTGCAAAGCATTCTCGACCATAGATGCTAACTGTTGGCCT 299
Query 449 CATATGTTCCCGCTTAA-CCCGTTCTTTCCACCTCTGCTTAAGGACAACTGTGCGCACAT 507
|||||||| ||| |||| ||| |||||||||||| |||||||||||||||||||||||||
Sbjct 300 CATATGTTTCCG-TTAAACCCATTCTTTCCACCTTTGCTTAAGGACAACTGTGCGCACAT 358
Query 508 CGTCCCCAATTCTCCCTCAA--A-GTGAAAGCG-GGAATCAAGTGACTT 552
|||||||||||| ||| ||| | ||||||||| |||||||||||||||
Sbjct 359 CGTCCCCAATTCCCCCACAACCAAGTGAAAGCGAGGAATCAAGTGACTT 407
> Ahg951153 jgi|Araly1|951153|scaffold_803040.1
Length=401
Score = 204 bits (110), Expect = 9e-52
Identities = 227/281 (81%), Gaps = 17/281 (6%)
Strand=Plus/Plus
Query 278 TCACAATTTCCACCGGA-TTTTCCTATTGATGTGGAAAAATGTTGGGCATCACTTTTCAA 336
||| ||| |||||| || || |||||| ||| | || ||||||||| |||| || ||| |
Sbjct 126 TCAAAATCTCCACC-GAGTTCTCCTATCGATTTAGAGAAATGTTGGTCATCTCTCTTC-A 183
Query 337 TAC-T-CAGGGATGCGTATTCGAACTTTTA-AAGTCAGTTTTTTCTGGTCAGTTTGGAAA 393
|| | || ||||||||| |||| | | || || |||||||| ||| ||||||||||
Sbjct 184 -ACGTCCATGGATGCGTACTCGAGC-TATACAAATCAGTTTTCAGTGGAAAGTTTGGAAA 241
Query 394 TGTTGGAGTTGCATGTTGCAAAGCAT-TGTCGACCATAGATGCTAACTGTTGGCCTCATA 452
|||||| | || |||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 242 CGTTGGAATCGCGTGTTGCAAGGCATAT-TCGACCATAGATGCTAACTGTTGGCCTCATA 300
Query 453 TGTTCCCGCTT-AACCCGTTCTTTCCACCTCTGCTTAAGGACAACTGTGCGCACATCGTC 511
|||| ||| || |||||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 301 TGTTTCCG-TTGAACCCGTTCTTTCCACCTCTTCTTAAAGACAATTGTGCACACATCGTT 359
Query 512 CCCAA-TTCTCCCTCA-A--AGTGAAAGCGGGAATCAAGTG 548
||||| || ||| || | ||||||| || ||| |||||
Sbjct 360 CCCAACTTG-CCCGCACACTAGTGAAATCGAGAAAGAAGTG 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28058466912
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5