BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35170.1
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491133 jgi|Araly1|491133|fgenesh2_kg.7__566__AT4G35170.1 1546 0.0
> Ahg491133 jgi|Araly1|491133|fgenesh2_kg.7__566__AT4G35170.1
Length=1147
Score = 1546 bits (837), Expect = 0.0
Identities = 1014/1096 (93%), Gaps = 26/1096 (2%)
Strand=Plus/Plus
Query 1 CCAACTTCTAAAATAGAGATCATAACCAAAACATTACAAAATTTCCAAATCAAAATCAAA 60
|||||||||||||||||| ||| ||| |||| |||| |||||||||||||||||||||||
Sbjct 1 CCAACTTCTAAAATAGAGGTCACAACAAAAATATTATAAAATTTCCAAATCAAAATCAAA 60
Query 61 AGCTTAATTTATTGAGAAGGAGATGATG-ACGTGGCCGGCTAGATCATCGCCGCAAAACA 119
|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |
Sbjct 61 AGCTTAATTTATTGAGAAGGAGATGA-GAACGTGGCCGGCTAGATCTTCGCCGCAAAAGA 119
Query 120 CGAGGAAGCCAGTTTACGTCGTGCATAGCCCACCGAACACAGACGTAGACAAGATATCGA 179
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 120 CGAGGAAGCCGGTTTACGTCGTGCATAGCCCACCAAACACAGACGTAGACAAGTTATCAA 179
Query 180 CCGGTTCAGGTTTTAGCCCATTCGGGTCACCCCTTAACGATCAGGGTCAGGTCAGCAACT 239
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 CCGGATCAGGTTTTAGCCCATTCGGGTCACCCCTTAACGATCAGGGTCAGGTCAGCCACT 239
Query 240 TTCAACATCACTCGGTGGCCGAGTCATCTTCGTATCCACGATCGTCAGGACCATTGAGAA 299
| | ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 TCCGTCATGACTCGGTGGCCGAGTCATCTTCGAATCCACGATCGTCAGGACCATTGAGAA 299
Query 300 ACGAGTACAGCAGTGTCCAAGTGCATGATCTTGACCGTCGAACT-CATGAAGATGAAGAT 358
|||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 300 ACGAGTACAGAAGTGTCCAAGTGCATGATCTTGACCGTCGAA-TCCATAAAGATGAAGAT 358
Query 359 TACGATGAAATGGACGGTCC-G--GATGAGAAGAGGAGAAGGATAACGAGGTTTTACTCG 415
||||||||||||||||| || | |||||||||||||||||| ||| |||||||||||||
Sbjct 359 TACGATGAAATGGACGGCCCAGATGATGAGAAGAGGAGAAGGGTAATGAGGTTTTACTCG 418
Query 416 TGCTTGTTGTTTACGTTGGTGTTGGCCTTCACTCTCTTCTGTCTCATTTTGTGGGGAGTT 475
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 419 TTCTTGTTGTTTACGTTGGTGTTGGCCTTCACTCTCTTTTGTCTCATTTTGTGGGGAGTT 478
Query 476 TCCAAATCTTTCGCACCTATTGCCACTTTGAAGGAAATGGTATTGGAGAACTTGAATGTG 535
|||||||||||| ||||||||| |||||||||||| ||||||||||||| |||||| |||
Sbjct 479 TCCAAATCTTTCTCACCTATTGTCACTTTGAAGGAGATGGTATTGGAGAGCTTGAACGTG 538
Query 536 CAGTCCGGGAACGACCAATCGGGAGT-GCTCACAGATATGCTAACTCTAAATTCAACGGT 594
|||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 539 CAGTCCGGGAACGACCAATCGGGAGTAG-TCACAGATATGCTAACCCTAAATTCAACGGT 597
Query 595 CAGGATCTTATACAGAAACCCCGCAACTTTCTTCACTGTCCACGTCACCTCCGCTCCCCT 654
|||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 598 CAGGATCTTATATAGAAACCCCGCAACTTTTTTCACTGTCCACGTCACCTCCTCTCCCCT 657
Query 655 CCAGCTCAGCTATTCCCAGCTTATCCTCGCATCCGGTCAGATGGGAGAGTTCTCTCAACG 714
||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||||
Sbjct 658 CCAGCTCAGCTATTCCCAGCTCATCCTCGCGTCCGGTCAGATGGAAAAGTTCTCTCAACG 717
Query 715 AAGGAAAAGCGAGAGAATCATTGAGACCAAAGTATTT-GGGGATCAAATTCCTCTGTATG 773
||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |
Sbjct 718 AAGGAAAAGCGAGAGAATCATTGAGACCAAAGT-TTTAGGGAATCAAATTCCTCTGTACG 776
Query 774 GAGGCGTACCGGCTCTGTT-TGGCCAACGAGCTGAACCGGACCAAGTCGTTTTGCCTCTT 832
||||| |||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 777 GAGGCATACCGGCTCT-TTACGCCCAACGAGCTGAACCGGACCAAGTCGTTTTGCCTCTT 835
Query 833 AACCTGACTTTTACGTTGCGA-GCACGAGCCTATGTGCTCGGACGATTGGTCAAGACTAC 891
|| ||||| || ||||| | | || ||||||||||||||||| ||||||||||||||||
Sbjct 836 AATCTGACATTCACGTTAC-AGGCTCGAGCCTATGTGCTCGGCCGATTGGTCAAGACTAA 894
Query 892 GT-TCCACTCGAATATCAAATGCAGCATCACTTTTTATGGCGATAAACTTGGCAAGACAC 950
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GTGT-CACTCGAATATCAAATGCAGCATCACTTTTTATGGCGATAAACTTGGCAAGACAC 953
Query 951 TTGATCTCTCCAAGTCCTGTTCTGATCATTGATCAAAATGAACAGCATAATGAT--G--- 1005
|||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |
Sbjct 954 TTGATCTCTCCAAGTCTTGTTCTGATCATTGACCAAAATGAACAGCATCATGATCTGTTC 1013
Query 1006 --ATTTAGAGAAGATTAAATTATTTCATGACTTAATCGGTGAGATATACATGTAAAGAGG 1063
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1014 TGATTTAGAGAAGATTATATTATTTCATGATTTAATCGGTGAGATATACATGTAAAGAGG 1073
Query 1064 GATGGAAAT-GTTTTA 1078
|| | |||| ||||||
Sbjct 1074 GACG-AAATTGTTTTA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46052483736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5