BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35180.1
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491132 jgi|Araly1|491132|fgenesh2_kg.7__565__AT4G35180.1 2375 0.0
> Ahg491132 jgi|Araly1|491132|fgenesh2_kg.7__565__AT4G35180.1
Length=1535
Score = 2375 bits (1286), Expect = 0.0
Identities = 1458/1541 (95%), Gaps = 12/1541 (1%)
Strand=Plus/Plus
Query 1 ATATAGCCATACAATTTGTGGCTCGACGTAAATAACGCGATTGGAGT-CGTTAGAGGAAA 59
|||||||||| |||| |||||||| |||||||||||| ||||| ||| | ||||||||||
Sbjct 1 ATATAGCCATTCAATCTGTGGCTCTACGTAAATAACGTGATTGAAGTAC-TTAGAGGAAA 59
Query 60 ATAAAGTTTA-TTTTGTATACAATGTCTATAGCATTGG-GAAACTTATTTGATTTGGAAT 117
|||||| | | |||| |||| |||||||||||||||| ||| || |||||||||||||
Sbjct 60 ATAAAGATAACTTTT-AATACGATGTCTATAGCATTGGCCAAA-TTGTTTGATTTGGAAT 117
Query 118 CACAAGAAAGTGGTGGTTCTCCTTTATTTATGTCACCAGCCCCCTCCACGGATCCACAAC 177
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CACAAGAAAGTGGTGATTCTCCTTTATTTATGTCACCAGCCCCCTCCACGGATCCACAAC 177
Query 178 CAATCTCCGGCGaaaaaaaCGGCGGCGATGGTGGTAGGATTCCGGTAGAAGAGTGGCTGC 237
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 178 CAATCTCCGGCGACAAAAACGGCGGCGATGGTGGGAGGATTCCGGTAGAAGAGTGGTTGC 237
Query 238 CGATCACAGAATCAAGAAAAGGAAATGTTTATACGGCGACGTTTCATCTTCTCTGTTCGG 297
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 238 CGATCACGGAATCAAGAAAAGGGAATGTTTATACGGCGACGTTTCATCTTCTCTGTTCGG 297
Query 298 GAATTGGTCTCCAAGTGATTCTTCTTCCTGCAGCTTTCGCAGCACTCGGATGGGTATGGG 357
| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 GTATTGGTCTGCAAGTGATTCTTCTTCCTGCAGCTTTCGCAGCACTCGGGTGGGTATGGG 357
Query 358 GAACGATAATCTTAACGGTAGGG-TTTGTATGGAAGCTCTACACGACGTGGCTTCTTGTT 416
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 GAACGATAATCTTAACGGT-GGGATTTGTATGGAAGCTCTACACGACGTGGCTTCTTGTT 416
Query 417 CAACTCCACGAAGCGGTTCCGGGAATTCGTATCAGCAGATACGTGAGACTCGCAATTGC- 475
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct 417 CATCTCCACGAAGCGGTTCCGGGAATACGTATGAGCAGATACGTGAGACTCGCAATT-CA 475
Query 476 TTCTTTTGGTGTGAAGCTTGGGAAACTTCTCGGAATATTCCCTGTGATGTATCTCTCAGG 535
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 476 TTCTTTTGGTGCGAAGCTTGGGAAACTTCTCGGGATATTCCCTGTGATGTATCTCTCTGG 535
Query 536 AGGAGCTTGTACGATTCTGGTTATAACCGGAGGGAAATCAATACAACAACTGTTACAAAT 595
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 536 AGGAGCTTGTACGATTCTGGTTATAACCGGAGGGAAATCATTACAACAACTGTTACAAAT 595
Query 596 TATGTCTGACGACAATACAGCGCCACTTACTTCAGTGCAATGCTTCTTGGTTTTTAGTTG 655
||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 596 TATGTCTGAAGACAACATAGCGCCACTTACTTCCGTGCAATGCTTCTTGGTTTTTAGCTG 655
Query 656 CATTGCGATGATCATGTCTCAGTTTCCGAATCTAAATTCTCTCTTTGGAGTCTCGTTGAT 715
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 656 CATTGCGATGATCATGTCTCAGTTTCCAAATCTAAATTCTCTTTTTGGAGTCTCGTTGAT 715
Query 716 CGGTGCTTTTATGGGAATTGCGTATTGCACCGTGATATGGATTTTACCTGTAGCTAGTGA 775
||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||
Sbjct 716 CGGTGCTTTTATGGGCGTTGCTTATTGCACCGTGATATGGATTTTACCTGTAACTAGTGA 775
Query 776 CTCACAAAGGACTCAAGTCAGTGTCTCGTACGCTACAATGGATAAAAGTTTCGTTCACAT 835
||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 776 TTCACAAAAGACTCAAGTCAGTGTATCGTATGCTACAGCGGATAAAAGTTTCGTTCACAT 835
Query 836 TTTCAACGCTATTGGATTGATAGCTCTAGTATATCGCGGGAACAATCTCGTCCTTGAGAT 895
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 836 ATTCAACGCTATTGGATTGATAGCTCTAGTCTATCGCGGGAACAATCTCGTCCTTGAGAT 895
Query 896 ACAGGGTACTCTTCCTTCCGATTCAAAGAACCCTTCATGTAAGACAATGTGGAGAGCAGT 955
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 896 ACAGGGTACTCTTCCTTCCGATTCAAAGAACCCTTCAAGTAAGACAATGTGGAGAGCAGT 955
Query 956 GATGATCTCTCATGCTCTCGTCGCGATTTGTATGTTTCCATTAACGTTTGCTGTATATTG 1015
|||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||
Sbjct 956 AATGATCTCTCATGCTCTCGTTGCGATTTGTATGTTTCCACTAACGTTTGTTGTATATTG 1015
Query 1016 GGCATACGGAGACAAGATTCCGGCGACGGGAGGTCCCGTGGGCAACTATCTGAAACTTTA 1075
||||||||||||||||||||||||||| |||||||| || ||||||||| ||||||||||
Sbjct 1016 GGCATACGGAGACAAGATTCCGGCGACAGGAGGTCCTGTAGGCAACTATTTGAAACTTTA 1075
Query 1076 CACACAAGAGCACTCGAAGCGAGCAGCCTGTTTCATACACCTCACGTTTATCTTCTCTTG 1135
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1076 CACACAAGAGCACTCGAAGCGAGCAGCCTGTTTCATACACCTAACGTTTATCTTCTCTTG 1135
Query 1136 CTTATGTTCATATCCGATAAACTTAATGCCGGCGTGTGACAACATAGAGATGGTGTACAT 1195
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1136 CTTATGTTCATATCCGATTAACTTAATGCCGGCGTGTGACAACATAGAGATGGTTTACAT 1195
Query 1196 AACCAAGAAGA-AAAAGCCTGCATCCATCATTGTCCGGATGATGTTGCGTGTGTTTTTGA 1254
||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1196 AACCAAGAA-ACAAAAGCCTGCATCCATCGTTGTCCGGATGATGTTGCGTGTGTTTTTGA 1254
Query 1255 GCTTGGTTTGTTTCACTATAGCCGTTGGATTCCCGTTCTTGCCTTATCTAGCGGTTCTTA 1314
|||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1255 GCTTGGTTTGTTTCTCTATAGCCGTTGGGTTCCCGTTCTTGCCTTATCTGGCGGTTCTTA 1314
Query 1315 TTGGAGCAATAGCCTTGCTTGTGACGTTTACGTATCCATGTTTCATGTGGATCTCTATCA 1374
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TCGGAGCAATAGCCTTGCTTGTGACGTTTACGTATCCATGTTTCATGTGGATCTCTATCA 1374
Query 1375 AAAAGCCCCAAAGGAAAAGCCCAATGTGGTTGTTTAACGTTTTGGTGGGTTGCCTAGGTG 1434
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1375 AAAAGCCCCAAAGGAAAAGCCCAATGTGGTTGTTCAACGTTTTGGTGGGTTGCTTAGGTG 1434
Query 1435 CTTCTCTCAGCGTTTTGCTTCTGGTTGCCTCGGCTATGCGTTTGGCTCAAAAGGGTTTGC 1494
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1435 CTTCTCTCAGCGTTTTGCTTTTGGTTGCCTCGGCTATGCGTTTGGCTCAAAAGGGGTTGC 1494
Query 1495 ATGCTAACTTCTTCAGACCCTAAAGCATCCTTGCAATCGTT 1535
|||| ||||||||||| ||||||||||| |||||||| |||
Sbjct 1495 ATGCAAACTTCTTCAGCCCCTAAAGCATTCTTGCAATTGTT 1535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63572618905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5