BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35190.1
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944375 jgi|Araly1|944375|scaffold_700604.1 1175 0.0
> Ahg944375 jgi|Araly1|944375|scaffold_700604.1
Length=720
Score = 1175 bits (636), Expect = 0.0
Identities = 697/725 (96%), Gaps = 9/725 (1%)
Strand=Plus/Plus
Query 104 GTAAACTGATTTGGCTAAGAAAATGGAAATAGTGAAGTCGAGGTTCAAGAGGGTTTGTGT 163
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAAACTGATTTGGCTAAGAGAATGGAAATAGTGAAGTCGAGGTTCAAGAGGGTTTGTGT 60
Query 164 GTTCTGTGGTAGCAGCAGCGGAAAGAGAGAGTGCTACAGTGATGCCGCCACTGATCTAGC 223
|||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 61 GTTCTGTGGTAGCAGCAGCGGAAACAGAGAGTGCTACAGAGATGCTGCCACTGATCTAGC 120
Query 224 TCAAGAGCTGGTGACGAGGAGATTGAATCTTGTGTATGGAGGAGGAAGCATTGGTCTCAT 283
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TCAAGAGCTGGTGACGAGGAGATTGAACCTTGTGTATGGAGGAGGAAGCATTGGTCTCAT 180
Query 284 GGGTTTGGTCTCACAAGCTGTTCATGAAGCTGGAGGACATGTACTAGGGATCATACCAAG 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGGTTTGGTCTCACAAGCTGTTCATGAAGCTGGAGGACATGTACTAGGGATCATACCAAG 240
Query 344 GACTCTTATGGACAAAGAGATAACCGGAGAAACATATGGTGAGGTAATAGCTGTGGCGGA 403
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GACTCTTATGGACAAAGAGATAACCGGAGAAACATATGGTGAGGTAAAAGCTGTGGCGGA 300
Query 404 TATGCATGAAAGAAAAGCCGAAATGGCACGCCACTCGGATTGTTTCATTGCTTTACCAGG 463
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 TATGCATGAAAGGAAAGCCGAAATGGCACGCCACTCGGATTGTTTCATTGCATTACCAGG 360
Query 464 TGGGTATGGAACACTGGAGGAGTTATTGGAAGTAATAGCATGGGCACAACTTGGAATTCA 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TGGGTATGGAACACTGGAGGAGTTATTGGAAGTAATAGCATGGGCACAACTTGGAATCCA 420
Query 524 CGACAAGCCTGTGGGTTTGTTAAATGTGGATGGTTATTACAATTACCTCCTCACTTTCAT 583
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 CGACAAACCTGTGGGTTTGTTAAATGTGGATGGTTATTACAATTACCTCCTTACTTTCAT 480
Query 584 TGATAAAGCCGTTGATGATGGCTTTATCAAACCATCTCAGCGTCACATCTTTGTCTCAGC 643
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 TGATAAAGCCGTTGATGATGGCTTTATCAAGCCATCTCAGCGTCACATCTTTGTCTCAGC 540
Query 644 CCCCAATGCCAAAGAGCTTGTCCAAAAACTTGAGGCATACAAGCCAGTGAATGATGGAGT 703
||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 541 CCCTAATGCCAAAGAGCTTGTCCAAAAACTTGAGGCATATGAGCCAGTGAGTGATGGAGT 600
Query 704 CATAGCTAAATCTAGGTGGGAGGTTGAGAAGAAAGTGCAACAGCCGCAACAACAGCAACA 763
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 CATAGCAAAATCTAGGTGGGAGGTTGAGAAGAAAGTGCAACAGCCGCAACAA--G----- 653
Query 764 AGTAGTGTTCTGTTCTAACACAAGCATGCAGACTGAGATTGCCCTTTAGACTTTTAGAGG 823
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 654 --TAGTGTTCTGTTCTAACACAAGCATGCAGACTGAGATTGCTCTCTAGACTTTTAGAGG 711
Query 824 GTCTT 828
|||||
Sbjct 712 GTCTT 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36712369071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5