BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35210.1
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491129 jgi|Araly1|491129|fgenesh2_kg.7__562__AT4G35210.1 691 0.0
Ahg931549 jgi|Araly1|931549|scaffold_304006.1 486 1e-136
> Ahg491129 jgi|Araly1|491129|fgenesh2_kg.7__562__AT4G35210.1
Length=739
Score = 691 bits (374), Expect = 0.0
Identities = 456/494 (92%), Gaps = 11/494 (2%)
Strand=Plus/Plus
Query 121 GACCGGAGAGCCATTGAAGACAGAACAAACATCTAAGCATTTTCTTCATCTCAAAAACAG 180
|||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GACCTGAGAGCCAATGAAGACAGAACAAACATCTAAGCATTTTCTTCATCTC-AAAACAG 59
Query 181 AGAAAGAAAGCTCAAACaaaaaaaaTGGCAGTCTCCTTCCATGTTCGATCTAGCAGCTAC 240
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 AGAAATAAAGCTCAAAC--AAAAAATGACAGTCTCCTTCCATGTTCGATCTAGCAGCTAC 117
Query 241 CCTTCAAGGCAACACCCTCAAGCCGCTCATGTCGATGAGCAATTAACCCGATTGAGATCT 300
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 118 CCTTCAAGGCAACACCCTCAAGCCGCTCATGTCGATGAGCACTTGACCCGATTGAGATCT 177
Query 301 TCTGGGACAGCTTCTTCATCTTCTATCTGCCAGAGACTTAGCAACCTTCAAGACTTACAT 360
|||| |||||||||||||||||||||| | || |||||||||||||||||||| ||||||
Sbjct 178 TCTGAGACAGCTTCTTCATCTTCTATCCGTCAAAGACTTAGCAACCTTCAAGATTTACAT 237
Query 361 GATTCTCTTGAAAAGATGATTCGCTTATCTGTCACCAACCAGGCTTTATCTCAAGATCAG 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 GATTCTCTTGAAAAGATGATTCGCTTATCTGTCACCAACCATGCTTTATCTCAAGATCAG 297
Query 421 ATTGAGAAGCTTCTTGATGGATCCATCAAAATCTTGGACCTATGCAGCATTTCT--AAGG 478
||||||||| |||||||||||||||||||||||||||| | |||| || || ||||
Sbjct 298 ATTGAGAAGTTTCTTGATGGATCCATCAAAATCTTGGATTTGTGCA--ATGTCGCCAAGG 355
Query 479 ATGGTTTGTCGCAAATGAAAGAGAG-TCTCAAGGAGATCCAATCGATTGTAAGAAGAAAG 537
||| |||||| || |||||||| || ||||| |||||||||||| ||| || ||||||||
Sbjct 356 ATGCTTTGTCACAGATGAAAGA-AGGTCTCATGGAGATCCAATCTATTCTACGAAGAAAG 414
Query 538 CGTGGAGATCTATCCGCTGAGGTCAAGAAATACTTAGCCTCAAGAAAGTTTCTCAAGAAA 597
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 CGTGGAGATCTATCTGCTGAGGTCAAGAAATACTTAGCTTCAAGAAAGTTTCTCAAGAAA 474
Query 598 TCATT-CGAAAAAG 610
||||| | ||||||
Sbjct 475 TCATTTC-AAAAAG 487
Score = 374 bits (202), Expect = 9e-103
Identities = 240/258 (93%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 726 AAAGGCTTGTGGAAAATGGTCACTGGTCTCAAAGATGATGAGCCAAAGCAAAGGTACATG 785
||| ||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 483 AAAAGCTTGTGGAAAATGGCCACTAGTCTCAAAGATGATGAGCCAAAGCAAAGTTACATG 542
Query 786 TGAAGCTGAAGCAAATGAATTCACAAGAGTAGACATGGAGTTCCAATCCGAAAAGTCGTT 845
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGAAGCAGATGCAAATGAATTCACAAGAGTAGACATGGAGTTCCAATCCGAAAAGTCGTT 602
Query 846 ACAAATGGAGGATGTGCAGAACTTAGAAAT-ATGCATTCAAGATCTTGAAGATGGGATTG 904
|| |||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 603 GCAGATGGAGGATGTGCAGAACTTAG-AGTCATGCATTCAAGATCTTGAAGATGGGATTG 661
Query 905 GGTCACTCTCTAAATCATTGATCAAATACAGAGTCTCTATTCTTAACATCTAATAAATCA 964
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 662 GGTCACTCTCTAAATCATTGATCAAATATAGAGTCTCAATTCTTAACATCTAATAGGTCA 721
Query 965 TTGTACCCAC-AAATTTT 981
||| ||||| |||||||
Sbjct 722 CTGTGCCCACGAAATTTT 739
> Ahg931549 jgi|Araly1|931549|scaffold_304006.1
Length=833
Score = 486 bits (263), Expect = 1e-136
Identities = 629/798 (79%), Gaps = 56/798 (7%)
Strand=Plus/Plus
Query 201 aaaaaTGGCAGTCTCCTTCCATGTTCGATCTAGCAGCTACCCTTCAAGGCAACACCCTCA 260
||||||||||||||| ||||| ||||| |||| ||| | |||||| || | | ||| ||
Sbjct 17 AAAAATGGCAGTCTCTTTCCACGTTCGCTCTAACAGTTTCCCTTCTAGACTTCCCCCACA 76
Query 261 AGCCGCTCATGTCGATGAGCAATTAACCCGATTGAGATCTTCTG-GGA---C-AG-CTTC 314
||||||||||||||||||||| || | ||||| |||||||||| ||| | | | ||
Sbjct 77 AGCCGCTCATGTCGATGAGCAGTTGGCTCGATTAAGATCTTCTGAGGATGCCTCGACATC 136
Query 315 TTC-A--TCTTCTATCTGCCAGAGACTTAG-CAACCTTCAAGA-CTTACATGATTCTCTT 369
||| | |||| ||||||| | |||||| | ||||||||||| | ||||||| ||||||
Sbjct 137 TTCTAGCTCTTATATCTGCAATAGACTT-GAAAACCTTCAAGAGC-TACATGAGTCTCTT 194
Query 370 GAAAAGATGATTCGCTTATCTGTCAC-CAACCAGGCTTTA--TC-TCA--AGATC-AG-- 420
|| ||| | |||||| || |||| || ||| || ||| || || | ||| | ||
Sbjct 195 GACAAGTTTATTCGCCTACCTGTAACACAA-CAAGCTCTAGGTCAAGAGCAGAACAAGAA 253
Query 421 A----TTGAG-AAGCTTCTTGATGGATCCATCAA-AATCTTGGACCTATGCAGCATTTCT 474
| | ||| || ||||||||||||| | | || |||||||| | |||| ||||||
Sbjct 254 AGCCGTCGAGCAA-CTTCTTGATGGAT-CTTTAAGGATCTTGGATTTGTGCAACATTTCC 311
Query 475 AAGGATGGTTTGTCGCAAATGAAAGAGAGTCTCAAGGAGATCCAATCGATTGTAAGAAGA 534
||||||| |||||| || ||||||||| |||||| |||||||||||||||| || |||||
Sbjct 312 AAGGATGCTTTGTCACAGATGAAAGAGGGTCTCATGGAGATCCAATCGATTCTACGAAGA 371
Query 535 AAGCGTGGAGATCTATCC-GCTGAGGTCAAGAAATACTTAGCCTCAAGAAAGTTTC-TCA 592
||||| || || ||| || | |||||||||||||||||||||||||||| | | | | |
Sbjct 372 AAGCGCGGTGACCTA-CCGGGAGAGGTCAAGAAATACTTAGCCTCAAGAA-GATCCCTAA 429
Query 593 AGAAATCATTCGAAAAAGTACTCAAGAGTTT-AA----AAACAAG-CCAAAACAAAAACG 646
|||| |||||| |||| || ||||||||||| || ||||||| |||| | ||
Sbjct 430 AGAAGTCATTCCAAAAGGTCCTCAAGAGTTTGAAGGTCAAACAAGACCAAGAGTGCGGCG 489
Query 647 ACGC-T--TTGGCTGTGTTTGGAGAAGCAGAA-ACTGTAACAATTGCTTTGTTTGAAAGT 702
|| | ||||| |||||||||||||||||| | ||| ||||||||| ||||||| |
Sbjct 490 ACAAATCCTTGGCAGTGTTTGGAGAAGCAGAAGA-TGTGACAATTGCTCTGTTTGATTCT 548
Query 703 CTATTTAGCTTCATGTCCGGATCAAAGGCTTGTGGAAAATGGTCACTGGTCTCAAAGATG 762
|| ||| |||||||||| ||||||||| ||||| | |||||||| | ||||||||| |
Sbjct 549 CTGTTTTGCTTCATGTCTGGATCAAAGACTTGTAGCAAATGGTCTGTCGTCTCAAAGCTA 608
Query 763 ATGAGCCA-AAGCAAAGGTACATGTGAAGCTGAAGCAAATGAATTCACAAGAGTAGACAT 821
|||| | | ||| |||| ||||||||||||| ||| ||| ||||||||||| || || |
Sbjct 609 ATGAACAAGAAG-AAAGTTACATGTGAAGCTCAAGGAAACGAATTCACAAGGGTTGAT-T 666
Query 822 G-GAGTTCCAATCCGAAAAGTCGTTACAA-ATGGAGGATGTGCAGAACTTAGAAAT-ATG 878
|| ||||||||||||||| | || || ||||| ||||| |||| |||||| | |||
Sbjct 667 CCGAATTCCAATCCGAAAAGACATTG-AAGATGGAAGATGTTCAGATCTTAGAT-TCATG 724
Query 879 CATTCAAGATCTTGAAGATGGGA-TTGGGTCACTCTCTAAATCATTGATCAAATACAGAG 937
||||||||||||||||||||| | ||| || |||||||| || ||||||||||||||||
Sbjct 725 CATTCAAGATCTTGAAGATGG-ACTTGAATCTCTCTCTAAGTCTTTGATCAAATACAGAG 783
Query 938 TCTCTATTCTTAACATCT 955
|||| |||||||||||||
Sbjct 784 TCTCAATTCTTAACATCT 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37779810747
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5