BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35220.1
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491128 jgi|Araly1|491128|fgenesh2_kg.7__561__AT4G35220.1 1807 0.0
> Ahg491128 jgi|Araly1|491128|fgenesh2_kg.7__561__AT4G35220.1
Length=1227
Score = 1807 bits (978), Expect = 0.0
Identities = 1151/1232 (93%), Gaps = 21/1232 (2%)
Strand=Plus/Plus
Query 1 CCAAAATGGTCAAAATCAATTCATCTTCTTCGTGATGATCGTAATCACCAACCAGTGACC 60
|||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||
Sbjct 1 CCAAAATGGTCAAAATCATTTCATCTTCTTCGTGATGATCGAAATCATCAGTGAGTGACC 60
Query 61 TAACAATGGCCGttcctccattattcttcctcctcacactcctctctctcccttctcttc 120
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 61 TAACAATGGCCGTTCCTCCATTATTCCTCCTCCTCACACTCCTATCTCTCCCTTCTCTTC 120
Query 121 ttatctccGCCGGTGCTTCCAATGCCTATCCTTCTATTCCCGGAACCGCTCCTATCGACG 180
||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TTATCTCCGCCTCTGCCTCCGATGCCTATCCTTCTATTCCCGGCACCGCTCCTATCGACG 180
Query 181 GAGGTTTCACCGATGAACTTAAACCCATTCGCCGTGAAGTCTACGGGAATGGCAAAATCT 240
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 181 GAGGTTTCACCGATGAACTTAAACCCATCCGCCGTGAAGTCTACGGTCATGGCAAAATCT 240
Query 241 ATGACATCAGTCACCGTTACACTCCGGAGATGCCGTCGTGGGACTCATCGGAAGGAATCG 300
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 241 ACGACATCAGTCACCGTTACACTCCGGATATGCCGTCGTGGGACTCATCGGAAGGACTCG 300
Query 301 GACGGTTCCTATGGTTAGCTGCGAGTATGAAGAACGGATCTCTTGCTAATAACTCTGAAA 360
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 301 GACGGTTTCTATGGTTAGCTGCGAGTATGAAGAATGGATCTCTCGCTAATAACTCTGAAA 360
Query 361 TGAAGATTCCC-ACGCACACTGGTACTCATGTTGATTCACCTGGTCACGTCTATGACAAG 419
|||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 TGAAGA-TCCCTACGCACACTGGTACTCACGTTGATTCACCTGGTCACGTCTATGACAAC 419
Query 420 TATTACGATGCTGGCTTT-GATGTTGACTCGCTTGATCTTCAAGTCCTCAATGGTCTTGC 478
|| || |||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TACTATGATGCTGG-TTTCGATGTTGACTCGCTTGATCTTCAAGTCCTCAATGGTCTTGC 478
Query 479 GTTGTTGGTTGATGTTCCAAAGGATAAGAACATTACTGCTGAAGTGATGAAATCTCTTCA 538
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 479 GTTGTTGGTTGATGTTCCAAAGGATAAGAACATAACTGCCGAAGTGATGAAGTCTCTTCA 538
Query 539 CATTCCAAAAGGAGTTAGTCGTGTGCTTTTCAGAACATTGAACACTGACAGGCGTCTTAT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TATTCCAAAAGGAGTTAGTCGTGTGCTTTTCAGAACATTGAACACTGACAGGCGTCTTAT 598
Query 599 GTTCAAGAAAGAATTTGATACAAGCTATGTCGGATTCATGAAGGATGGTGCGCAATGGTT 658
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTTCAAGAAAGAGTTTGATACAAGCTATGTCGGATTCATGAAGGATGGTGCGCAATGGTT 658
Query 659 GGTAGACAACACAGACATCAAACTTGTTGGGATTGATTATCTATCAGTAGCTGCATATGA 718
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 GGTAGACAACACAGACATCAAACTTGTTGGGATTGATTATCTATCAGTGGCTGCATATGA 718
Query 719 TGATCTTATTCCATCCCACCTAGTATTCCTAAAAGACCGGGAGACTATACTCGTGGAGGG 778
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 TGATCTTATTCCGTCCCACCTAGTATTCCTAAAAGACCGGGAGACTATACTTGTGGAGGG 778
Query 779 GTTGAAGCTGGATGGTGTGAAGGCAGGACTCTACTCTGTCCATTGCTTACCTCTAAGACT 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATTGAAGCTGGATGGTGTGAAGGCAGGACTCTACTCTGTCCATTGCTTACCTCTAAGACT 838
Query 839 GGTTGGAGCAGAAGGGTCTCCAATTCGTTGCATCCTCATCGATTGATTCTCTCCCATCAC 898
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
Sbjct 839 GGTTGGAGCAGAAGGATCTCCAATTCGTTGCATCCTTATCGATTGATTCTCTCC--TCTC 896
Query 899 AAACCTGCCAAATCCGAAATTGTCCGTAATCAAAAGCTTGCTTAGCTTATGAACTGAATA 958
||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct 897 AAACCAGCCAAATCCGGAATTGTCTGTAATCAAAAGCTTGCGTAGCTTATGAACTCAATA 956
Query 959 TCAGTTTGTGCTAGATTTATGCAACCAATATGGAGATTGAAGTAGGAAGAAATAAGAGAG 1018
|||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 957 TCAGTTTGTGCTAGATATATGCAACCAGTATGGAGATTGAAGTAGGAAGTAATAAGAGAG 1016
Query 1019 ATGCAGAGAAGACCAAGTTGATGATAATGAAGCACCGAAGAAAAAAGATTTTTCATTTCT 1078
|||||||||||| ||||||| || | ||||||||||| |||||||||||| ||||||||
Sbjct 1017 GTGCAGAGAAGACGAAGTTGAGGAGAGTGAAGCACCGAGGAAAAAAGATTTCTCATTTCT 1076
Query 1079 ATGTATATGTCAATAAATAAATTAAAAATTCTCTTAATCTGTCAAGGTTGTACT---AAT 1135
|||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||
Sbjct 1077 ATGTATATGTCAATAAATTAATTAAAAATTCTCTTAATCTGACAAAGTTGTACTCCTAAT 1136
Query 1136 TATCAAA-TAG-G--------GAAAA-GTTCATAACATATAAATCCTTGTTGAAATAGGT 1184
||||||| | | | ||||| ||| || |||||||||||||||||||||||||
Sbjct 1137 TATCAAACT-GTGATTCTACAGAAAAAGTTTATGACATATAAATCCTTGTTGAAATAGGA 1195
Query 1185 TTTTGTTTTCCTGATCATATTCAGATTTGGTT 1216
||||||||||||||||||||||||||| ||||
Sbjct 1196 TTTTGTTTTCCTGATCATATTCAGATTGGGTT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45671254566
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5