BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35230.1 Length=1802 Score E Sequences producing significant alignments: (Bits) Value Ahg328224 jgi|Araly1|328224|fgenesh1_pm.C_scaffold_7000451 2150 0.0 Ahg480599 jgi|Araly1|480599|fgenesh2_kg.3__3300__AT2G17170.1 165 1e-39 > Ahg328224 jgi|Araly1|328224|fgenesh1_pm.C_scaffold_7000451 Length=1575 Score = 2150 bits (1164), Expect = 0.0 Identities = 1249/1290 (97%), Gaps = 6/1290 (0%) Strand=Plus/Plus Query 51 ATGGGTTGTTGTCAATCCTTGTTTTCCGGCGATAACCCACTTGGGAAAGATGGAGTTCAG 110 |||||||||||||||||||||| |||||| || |||||||||||||||||||||| |||| Sbjct 1 ATGGGTTGTTGTCAATCCTTGTGTTCCGGTGAAAACCCACTTGGGAAAGATGGAGCTCAG 60 Query 111 CCGCAACCACTATCTCAAAACAATCACGGCGGAGCTACGACGGCTGATAAC---GG---C 164 ||||||||||||||||||||| | ||| |||| |||||| | ||||||||| || | Sbjct 61 CCGCAACCACTATCTCAAAACCACCACCGCGGCGCTACGGCTGCTGATAACGGTGGAATC 120 Query 165 GGAAGCGGCGGAGCTAGTGGTGTAGGCGGCggaggaggaggaggaggaATCCCATCTTTC 224 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 121 GGAAGCGGCGGAGCTAGTGGTGTAGGCGGCGGAGGAGGAGGAGGAGGGATCCCATCTTTC 180 Query 225 TCTGAGTTCTCTTTCGCTGACCTTAAAGCAGCTACAAACAACTTTAGCTCAGACAACATC 284 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTGAGTTCTCTTTTGCTGACCTTAAAGCAGCTACAAACAACTTTAGCTCAGACAACATC 240 Query 285 GTATCAGAAAGTGGTGAGAAAGCCCCAAATCTTGTCTACAAAGGCCGACTTCAGAACCGT 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTATCAGAAAGTGGTGAGAAAGCCCCAAATCTTGTCTACAAAGGCCGACTTCAGAACCGT 300 Query 345 CGTTGGATCGCTGTCAAGAAGTTTACTAAGATGGCTTGGCCTGAGCCTAAACAATTTGCG 404 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 301 CGTTGGATCGCTGTCAAGAAGTTTACTAAGCTGGCTTGGCCTGAGCCTAAACAATTTGCG 360 Query 405 GAAGAAGCATGGGGTGTGGGGAAATTGAGGCATAATCGATTAGCGAATTTGATTGGATAT 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 361 GAAGAAGCATGGGGTGTGGGGAAATTGAGGCATAATCGATTAGCGAATTTGATTGGGTAT 420 Query 465 TGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAGTTCATGCCTAATGATACTCTTGCT 524 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 421 TGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAATTCATGCCTAATGATACTCTTGCT 480 Query 525 AAGCATTTGTTCCATTGGGAAAATCAGACAATTGAGTGGGCTATGAGGTTGCGAGTAGGA 584 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 481 AAGCATTTGTTCCATTGGGAAAATCAGACAATTGAATGGGCTATGAGGTTGCGAGTAGGA 540 Query 585 TATTACATAGCTGAGGCTTTGGATTATTGTAGTACTGAGGGTCGTCCATTGTACCATGAT 644 ||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||| Sbjct 541 TATTACATAGCCGAAGCATTGGATTATTGTAGTACCGAGGGTCGTCCATTGTACCATGAT 600 Query 645 TTGAATGCTTATAGGGTTCTCTTTGATGAGGATGGTGATCCTCGTCTCTCATGTTTTGGC 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTGAATGCTTATAGGGTTCTCTTTGATGAGGATGGTGATCCTCGTCTCTCATGTTTTGGC 660 Query 705 TTGATGAAGAACAGTAGGGATGGTAAAAGTTATAGCACAAATTTAGCTTATACACCACCT 764 ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| Sbjct 661 TTGATGAAGAACAGTAGAGATGGTAAAAGTTATAGCACAAATCTAGCATATACACCACCT 720 Query 765 GAATATCTAAGAAATGGAAGAGTGACACCTGAAAGTGTTACGTATAGCTTTGGAACTGTC 824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GAATATCTAAGAAATGGAAGAGTGACACCTGAAAGTGTTACGTATAGCTTTGGAACTGTC 780 Query 825 CTTCTGGATTTGCTTAGCGGAAAACACATCCCTCCAAGCCATGCTCTCGATATGATACGA 884 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 781 CTTCTGGATTTGCTTAGCGGAAAGCACATCCCTCCAAGCCATGCTCTCGATATGATACGA 840 Query 885 GGCAAGAATATTATTCTGTTGATGGATTCACACCTCGAAGGAAAGTTCTCAACAGAAGAG 944 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GGCAAGAATATTATTCTCTTGATGGATTCACACCTCGAAGGAAAGTTCTCAACAGAAGAG 900 Query 945 GCTACTGTAGTGGTCGAACTCGCCTCTCAATGTTTACAATATGAGCCTCGAGAGAGACCA 1004 ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 901 GCTACTGTAGTTGTCGAACTCGCCTCTCAATGTTTGCAATATGAGCCTCGAGAGAGACCC 960 Query 1005 AATACAAAAGATCTTGTTGCAACACTTGCACCATTGCAAACTAAATCAGACGTTCCATCT 1064 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 AATACCAAAGATCTTGTTGCAACACTTGCACCATTGCAAACTAAATCAGACGTTCCATCT 1020 Query 1065 TATGTGATGCTTGGAATAAAGAAGCAAGAGGAGGCACCTTCGACTCCACAGAGACCACTT 1124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TATGTGATGCTTGGAATAAAGAAGCAAGAGGAGGCACCTTCGACTCCACAGAGACCACTT 1080 Query 1125 TCGCCATTAGGTGAGGCCTGCTCAAGAATGGATCTCACAGCTATTCATCAGATTTTGGTC 1184 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1081 TCGCCATTAGGTGAGGCCTGTTCAAGAATGGATCTCACAGCTATTCATCAGATTTTGGTC 1140 Query 1185 ATGACACATTACAGAGACGACGAGGGCACAAACGAGTTATCATTCCAAGAATGGACTCAA 1244 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1141 ATGACACATTACAGAGACGACGAAGGCACAAACGAGTTATCATTCCAAGAATGGACGCAA 1200 Query 1245 CAAATGAAAGATATGCTTGATGCACGGAAACGCGGTGATCAATCTTTCCGCGAGAAAGAT 1304 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1201 CAGATGAAAGATATGCTTGATGCACGGAAACGCGGTGATCAATCTTTCCGCGAAAAAGAT 1260 Query 1305 TTCAAAACAGCCATCGACTGTTACTCACAG 1334 || ||||||||||||||||||||||||||| Sbjct 1261 TTTAAAACAGCCATCGACTGTTACTCACAG 1290 Score = 412 bits (223), Expect = 3e-114 Identities = 241/250 (96%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 1331 ACAGTTCATTGACGTTGGAACAATGGTATCTCCAACTGTATTTGGTCGGCGAAGTCTATG 1390 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1323 ACAGTTCATTGACGTTGGAACAATGGTGTCTCCAACTGTATTTGGTCGGCGAAGTCTATG 1382 Query 1391 CTACTTACTATGCGATCAACCAGATGCAGCACTACGCGACGCAATGCAAGCGCAGTGTGT 1450 |||||||||||||||||||||||| ||||||||||||||||| |||||||| || || || Sbjct 1383 CTACTTACTATGCGATCAACCAGACGCAGCACTACGCGACGCGATGCAAGCACAATGCGT 1442 Query 1451 GTATCCGGATTGGCCAACAGCTTTCTACATGCAGTCTGTGGCATTAGCGAAGCTGAACAT 1510 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1443 GTATCCGGATTGGCCAACGGCTTTCTACATGCAGTCTGTGGCATTAGCGAAGCTGAACAT 1502 Query 1511 GAACACAGACGCAGCCGATATGTTGAACGAAGCAGCTCAGCTCGAAGAAAAGAGACAACG 1570 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1503 GAACACAGACGCAGCCGATATGTTGAACGAAGCAGCTCAGCTTGAAGAGAAGAGACAACG 1562 Query 1571 AGGCGGCAGA 1580 |||||||||| Sbjct 1563 AGGCGGCAGA 1572 > Ahg480599 jgi|Araly1|480599|fgenesh2_kg.3__3300__AT2G17170.1 Length=837 Score = 165 bits (89), Expect = 1e-39 Identities = 196/245 (80%), Gaps = 18/245 (7%) Strand=Plus/Plus Query 453 TTGATTGGATATTGTTGTGATGGAGATGAGAGG-CTTCTTGTTGCTGAGTTCATGCCTAA 511 ||||| |||||||||||||||| |||||| ||| ||||||||||| |||||||||||||| Sbjct 274 TTGATGGGATATTGTTGTGATGAAGATGA-AGGACTTCTTGTTGCAGAGTTCATGCCTAA 332 Query 512 TGATACTCTTGCTAAGCATTTGTTCCATTGGGAAAATCAGACAATTGAGTGGGCTATGAG 571 ||||||||||||||||| ||| ||||| || | || | ||| | || ||| | ||||| Sbjct 333 TGATACTCTTGCTAAGCGTTTATTCCA--GG-AGAAG-A-ACA-TGGAATGGTCAATGAG 386 Query 572 GTTGCGAGTAGGAT-ATTACATAGCTGAGGCTTTGGATTATTGTAGTACTG-AGGGTC-G 628 ||||||||| || | || | |||||||| || ||||||||||| | || || | | | | Sbjct 387 GTTGCGAGT-GGCTTATCATATAGCTGAAGCATTGGATTATTGCAATAGTGTACGTTTTG 445 Query 629 TCCATTGTACCATGATTTGAA-TGCTTATAGGGTTCTCTTTGATGAGGATGGTGAT-CCT 686 | | ||||||| || | || |||||| | ||||| |||||| ||||||||||| ||| Sbjct 446 ACGA--GTACCATAATCT-AAGTGCTTACACTGTTCTGTTTGATAAGGATGGTGATGCCT 502 Query 687 CGTCT 691 |||| Sbjct 503 -GTCT 506 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67648275120 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5