BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35230.1
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328224 jgi|Araly1|328224|fgenesh1_pm.C_scaffold_7000451 2150 0.0
Ahg480599 jgi|Araly1|480599|fgenesh2_kg.3__3300__AT2G17170.1 165 1e-39
> Ahg328224 jgi|Araly1|328224|fgenesh1_pm.C_scaffold_7000451
Length=1575
Score = 2150 bits (1164), Expect = 0.0
Identities = 1249/1290 (97%), Gaps = 6/1290 (0%)
Strand=Plus/Plus
Query 51 ATGGGTTGTTGTCAATCCTTGTTTTCCGGCGATAACCCACTTGGGAAAGATGGAGTTCAG 110
|||||||||||||||||||||| |||||| || |||||||||||||||||||||| ||||
Sbjct 1 ATGGGTTGTTGTCAATCCTTGTGTTCCGGTGAAAACCCACTTGGGAAAGATGGAGCTCAG 60
Query 111 CCGCAACCACTATCTCAAAACAATCACGGCGGAGCTACGACGGCTGATAAC---GG---C 164
||||||||||||||||||||| | ||| |||| |||||| | ||||||||| || |
Sbjct 61 CCGCAACCACTATCTCAAAACCACCACCGCGGCGCTACGGCTGCTGATAACGGTGGAATC 120
Query 165 GGAAGCGGCGGAGCTAGTGGTGTAGGCGGCggaggaggaggaggaggaATCCCATCTTTC 224
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GGAAGCGGCGGAGCTAGTGGTGTAGGCGGCGGAGGAGGAGGAGGAGGGATCCCATCTTTC 180
Query 225 TCTGAGTTCTCTTTCGCTGACCTTAAAGCAGCTACAAACAACTTTAGCTCAGACAACATC 284
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTGAGTTCTCTTTTGCTGACCTTAAAGCAGCTACAAACAACTTTAGCTCAGACAACATC 240
Query 285 GTATCAGAAAGTGGTGAGAAAGCCCCAAATCTTGTCTACAAAGGCCGACTTCAGAACCGT 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTATCAGAAAGTGGTGAGAAAGCCCCAAATCTTGTCTACAAAGGCCGACTTCAGAACCGT 300
Query 345 CGTTGGATCGCTGTCAAGAAGTTTACTAAGATGGCTTGGCCTGAGCCTAAACAATTTGCG 404
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 CGTTGGATCGCTGTCAAGAAGTTTACTAAGCTGGCTTGGCCTGAGCCTAAACAATTTGCG 360
Query 405 GAAGAAGCATGGGGTGTGGGGAAATTGAGGCATAATCGATTAGCGAATTTGATTGGATAT 464
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GAAGAAGCATGGGGTGTGGGGAAATTGAGGCATAATCGATTAGCGAATTTGATTGGGTAT 420
Query 465 TGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAGTTCATGCCTAATGATACTCTTGCT 524
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAATTCATGCCTAATGATACTCTTGCT 480
Query 525 AAGCATTTGTTCCATTGGGAAAATCAGACAATTGAGTGGGCTATGAGGTTGCGAGTAGGA 584
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 AAGCATTTGTTCCATTGGGAAAATCAGACAATTGAATGGGCTATGAGGTTGCGAGTAGGA 540
Query 585 TATTACATAGCTGAGGCTTTGGATTATTGTAGTACTGAGGGTCGTCCATTGTACCATGAT 644
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 TATTACATAGCCGAAGCATTGGATTATTGTAGTACCGAGGGTCGTCCATTGTACCATGAT 600
Query 645 TTGAATGCTTATAGGGTTCTCTTTGATGAGGATGGTGATCCTCGTCTCTCATGTTTTGGC 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGAATGCTTATAGGGTTCTCTTTGATGAGGATGGTGATCCTCGTCTCTCATGTTTTGGC 660
Query 705 TTGATGAAGAACAGTAGGGATGGTAAAAGTTATAGCACAAATTTAGCTTATACACCACCT 764
||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct 661 TTGATGAAGAACAGTAGAGATGGTAAAAGTTATAGCACAAATCTAGCATATACACCACCT 720
Query 765 GAATATCTAAGAAATGGAAGAGTGACACCTGAAAGTGTTACGTATAGCTTTGGAACTGTC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAATATCTAAGAAATGGAAGAGTGACACCTGAAAGTGTTACGTATAGCTTTGGAACTGTC 780
Query 825 CTTCTGGATTTGCTTAGCGGAAAACACATCCCTCCAAGCCATGCTCTCGATATGATACGA 884
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTCTGGATTTGCTTAGCGGAAAGCACATCCCTCCAAGCCATGCTCTCGATATGATACGA 840
Query 885 GGCAAGAATATTATTCTGTTGATGGATTCACACCTCGAAGGAAAGTTCTCAACAGAAGAG 944
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGCAAGAATATTATTCTCTTGATGGATTCACACCTCGAAGGAAAGTTCTCAACAGAAGAG 900
Query 945 GCTACTGTAGTGGTCGAACTCGCCTCTCAATGTTTACAATATGAGCCTCGAGAGAGACCA 1004
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 GCTACTGTAGTTGTCGAACTCGCCTCTCAATGTTTGCAATATGAGCCTCGAGAGAGACCC 960
Query 1005 AATACAAAAGATCTTGTTGCAACACTTGCACCATTGCAAACTAAATCAGACGTTCCATCT 1064
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AATACCAAAGATCTTGTTGCAACACTTGCACCATTGCAAACTAAATCAGACGTTCCATCT 1020
Query 1065 TATGTGATGCTTGGAATAAAGAAGCAAGAGGAGGCACCTTCGACTCCACAGAGACCACTT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TATGTGATGCTTGGAATAAAGAAGCAAGAGGAGGCACCTTCGACTCCACAGAGACCACTT 1080
Query 1125 TCGCCATTAGGTGAGGCCTGCTCAAGAATGGATCTCACAGCTATTCATCAGATTTTGGTC 1184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TCGCCATTAGGTGAGGCCTGTTCAAGAATGGATCTCACAGCTATTCATCAGATTTTGGTC 1140
Query 1185 ATGACACATTACAGAGACGACGAGGGCACAAACGAGTTATCATTCCAAGAATGGACTCAA 1244
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1141 ATGACACATTACAGAGACGACGAAGGCACAAACGAGTTATCATTCCAAGAATGGACGCAA 1200
Query 1245 CAAATGAAAGATATGCTTGATGCACGGAAACGCGGTGATCAATCTTTCCGCGAGAAAGAT 1304
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1201 CAGATGAAAGATATGCTTGATGCACGGAAACGCGGTGATCAATCTTTCCGCGAAAAAGAT 1260
Query 1305 TTCAAAACAGCCATCGACTGTTACTCACAG 1334
|| |||||||||||||||||||||||||||
Sbjct 1261 TTTAAAACAGCCATCGACTGTTACTCACAG 1290
Score = 412 bits (223), Expect = 3e-114
Identities = 241/250 (96%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 1331 ACAGTTCATTGACGTTGGAACAATGGTATCTCCAACTGTATTTGGTCGGCGAAGTCTATG 1390
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1323 ACAGTTCATTGACGTTGGAACAATGGTGTCTCCAACTGTATTTGGTCGGCGAAGTCTATG 1382
Query 1391 CTACTTACTATGCGATCAACCAGATGCAGCACTACGCGACGCAATGCAAGCGCAGTGTGT 1450
|||||||||||||||||||||||| ||||||||||||||||| |||||||| || || ||
Sbjct 1383 CTACTTACTATGCGATCAACCAGACGCAGCACTACGCGACGCGATGCAAGCACAATGCGT 1442
Query 1451 GTATCCGGATTGGCCAACAGCTTTCTACATGCAGTCTGTGGCATTAGCGAAGCTGAACAT 1510
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 GTATCCGGATTGGCCAACGGCTTTCTACATGCAGTCTGTGGCATTAGCGAAGCTGAACAT 1502
Query 1511 GAACACAGACGCAGCCGATATGTTGAACGAAGCAGCTCAGCTCGAAGAAAAGAGACAACG 1570
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1503 GAACACAGACGCAGCCGATATGTTGAACGAAGCAGCTCAGCTTGAAGAGAAGAGACAACG 1562
Query 1571 AGGCGGCAGA 1580
||||||||||
Sbjct 1563 AGGCGGCAGA 1572
> Ahg480599 jgi|Araly1|480599|fgenesh2_kg.3__3300__AT2G17170.1
Length=837
Score = 165 bits (89), Expect = 1e-39
Identities = 196/245 (80%), Gaps = 18/245 (7%)
Strand=Plus/Plus
Query 453 TTGATTGGATATTGTTGTGATGGAGATGAGAGG-CTTCTTGTTGCTGAGTTCATGCCTAA 511
||||| |||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||
Sbjct 274 TTGATGGGATATTGTTGTGATGAAGATGA-AGGACTTCTTGTTGCAGAGTTCATGCCTAA 332
Query 512 TGATACTCTTGCTAAGCATTTGTTCCATTGGGAAAATCAGACAATTGAGTGGGCTATGAG 571
||||||||||||||||| ||| ||||| || | || | ||| | || ||| | |||||
Sbjct 333 TGATACTCTTGCTAAGCGTTTATTCCA--GG-AGAAG-A-ACA-TGGAATGGTCAATGAG 386
Query 572 GTTGCGAGTAGGAT-ATTACATAGCTGAGGCTTTGGATTATTGTAGTACTG-AGGGTC-G 628
||||||||| || | || | |||||||| || ||||||||||| | || || | | | |
Sbjct 387 GTTGCGAGT-GGCTTATCATATAGCTGAAGCATTGGATTATTGCAATAGTGTACGTTTTG 445
Query 629 TCCATTGTACCATGATTTGAA-TGCTTATAGGGTTCTCTTTGATGAGGATGGTGAT-CCT 686
| | ||||||| || | || |||||| | ||||| |||||| ||||||||||| |||
Sbjct 446 ACGA--GTACCATAATCT-AAGTGCTTACACTGTTCTGTTTGATAAGGATGGTGATGCCT 502
Query 687 CGTCT 691
||||
Sbjct 503 -GTCT 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67648275120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5