BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35240.1
Length=3219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888546 jgi|Araly1|888546|Al_scaffold_0007_532 1960 0.0
> Ahg888546 jgi|Araly1|888546|Al_scaffold_0007_532
Length=2484
Score = 1960 bits (1061), Expect = 0.0
Identities = 1301/1405 (93%), Gaps = 63/1405 (4%)
Strand=Plus/Plus
Query 237 ATGGGTTGTACAAGTTCTAAGCTTGACGATCTTCCGGCGGTTGCTCTTTGCCGTGAACGC 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTGTACAAGTTCTAAGCTTGACGATCTTCCGGCGGTTGCTCTTTGCCGTGAACGT 60
Query 297 TGTGCTTTCTTAGAAGCTGCTATTCATCAACGTTACGCTTTAGCTGAATCACACGTGGCT 356
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTGCTTTCTTAGAAGCAGCTATTCATCAACGTTACGCTTTAGCTGAATCACACGTGGCT 120
Query 357 TACACTCATTCGCTTCGAGAAATCGGTCACTCTCTCCATCTTTTCATCAATCACCACCAC 416
||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 121 TACACTCATTCGCTTAGAGGTATCGGTCATTCTCTCCATCTTTTCATCAACCACCACCAC 180
Query 417 CGTTTCGTCGCTTCCGGCGGCGCTAAC-GTCGGTGATTCTCCTCGACTTAATCTTCCTCC 475
||||||||||||||||||||||||| | || | |||||||||| ||||||||||||||||
Sbjct 181 CGTTTCGTCGCTTCCGGCGGCGCTACCGGT-GCTGATTCTCCTAGACTTAATCTTCCTCC 239
Query 476 TCAGAGAAAAGGTGACCTTGACGA---CGA---AGCAACAAATTC-CCCaaaaaaaCAAA 528
|||||||||||||||||||||||| ||| |||||||||||| || |||||||| ||
Sbjct 240 TCAGAGAAAAGGTGACCTTGACGATGGCGACGGAGCAACAAATTCACCTAAAAAAAC-AA 298
Query 529 AGCTTGCTTCTTCTCACCACAACCACAACCACGCTCACTCGGGTTCCGGTTCTGATTCGG 588
|||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 299 AGCTTGCTTCTTCT-----C-ACCACAACCACGCTCACTCGGGTTCGGGTTCTGATTCGG 352
Query 589 GTCATCTCGAATTCGATTCAGATTCCGACGAAGATGAAGAAGACGACGACGACTTGGATT 648
||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||
Sbjct 353 GTCATCTCGAATTCGATTCAGATTCCGACGACGATGAAGAAGA--A-GACGATTTGGATT 409
Query 649 TGGATTCGTTGCATCACCACTCTCCTC--C-CCACCACCATCTCGGCAATTTCCCTATTC 705
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
Sbjct 410 TGGATTCGTTGCATCACCACTCTCCTCAACACCACCACCATCTCGGCAATTTCCCTATAC 469
Query 706 CCGAATCAGCACCAATGGGCGGATACATGGAACAACAACCGGGTTATATAAACCC-GTAC 764
|||||||||||| |||||| |||||||||| |||||||||||||| | ||||| ||||
Sbjct 470 CCGAATCAGCACAAATGGGTGGATACATGG---AACAACCGGGTTATGT-AACCCGGTAC 525
Query 765 CCGAATCCAGATATGATGGGGCA---------TCCTTACTC---TGGAGGAGGAAGTTAT 812
|||||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 526 CCGAATCCAGATATGATGGGTCATCTTCCTCCTCCTTACTCTGATGGAGGAGGAAGTTAT 585
Query 813 ATGCACATGAATTACATGAAGAACAAATCCATGCCTCCTTCAGTTGTCTATGAGCAAAGA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 ATGCACATGAATTACATGAAGAACAAATCCATGCCTCCTTCAGTTGTCTATGAGCAAAGA 645
Query 873 CCAACTAGTCCTCAACGAGTCTACATAGGCGAATCATCATCTTCATATCCATATCCTCCT 932
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 CCAACTAGTCCTCAAAGAGTCTACATAGGCGAATCATCATCTTCATATCCATATCCTCCT 705
Query 933 CAAAATTCATATTTTGGATACTCAAATCCAGTACCCGGACCCGGACCAGGATACTACGGT 992
|||||| |||||| |||||||||||||||||| |||||| | | ||||||||
Sbjct 706 CAAAATCCATATTCTGGATACTCAAATCCAGT------ACCCGG---A-G--ACTACGGT 753
Query 993 TCTTCTTCTGCTTCTACAACTGCTGCAGCAACAAAACCGCCACCACCTCCACCGTCGCCG 1052
||||| | | ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 754 TCTTC-T-T-CTTCTACAACTGCTGCAGCTACAAAACCGCCACCGCCTCCACCGTCGCCG 810
Query 1053 CCTAGGTCTAACGGTTGGGATTTTTTGAATCCCTTTGATACTTATTATCCTCCGTATACT 1112
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 811 CCTAGGTCTAACGGTTGGGATTTTTTGAATCCGTTTGATACTTATTATCCTCCGTATACT 870
Query 1113 CCGAGTCGAGATTCGAGAGAGTTAAGAGAAGAAGAAGGTATACCGGATTTAGAAGACGAT 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CCGAGTCGAGATTCGAGAGAGTTAAGAGAAGAAGAAGGTATACCGGATTTAGAAGACGAT 930
Query 1173 GATTCACATTACGAAGTTGTTAAAGAAGTTTACGGCAAACCAAAATTCGCCGCCGGTGGT 1232
|||||||||||||| ||||||||||||||| |||| |||||||||||||||| |||||||
Sbjct 931 GATTCACATTACGAGGTTGTTAAAGAAGTTCACGGGAAACCAAAATTCGCCGGCGGTGGT 990
Query 1233 GGTCACCAACCAAATCCCGCCGCCGTACACATGATGAGGGAAGAGTCCCCGTCTCCGCCG 1292
||| | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 991 GGTAATCAACCGAATCCCGCCGCCGTACACATGATGAGGGAAGAGTCTCCGTCTCCGCCG 1050
Query 1293 CTTGATAAATCCGGTGCTAGTACTAGCGGTGGAGGTGATGTCGGAGATGCATCTGCGTAT 1352
||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 1051 CTTGATAAATCCGGTGCTAGTACAAGCGGTGGAGGTGATATCGGAGATGCGTCTGCGTAT 1110
Query 1353 CAGTCTAGACCAAGTGTGTCGGTGGAGAAAGAAGGGATGGAGTATGAAGTTCACGTTGTT 1412
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1111 CAGTCTAGACCGAGTGTGTCGGTGGAGAAAGAAGGAATGGAGTATGAAGTTCACGTTGTT 1170
Query 1413 GAGAAGAAGGTTGTTGAAGATGAGGAACGGCGGAGTAATGCCACGGCGACACGTGGTGGT 1472
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1171 GAGAAGAAGGTTGTTGAGGATGAGGAACGGCGGAGCAATGCCACGGCGACACGTGGTGGT 1230
Query 1473 GGTGGAGGAGGAGG-G--------CCACGTGCGGTGCCTGAAGTTGCGAAAGAGATTGAG 1523
|||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 1231 GGTGGAGGAGGAGGAGGTGGAGGGCCACGTGCGGTGCCTGAGGTTGCGAAAGAGATTGAG 1290
Query 1524 AATCAATTCGTGAAAGCTGCAGAGTCAGGAAGTGAGATTGCTAAGTTACTTGAAGTTGGG 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 AATCAATTCGTGAAAGCTGCAGAGTCAGGAAGTGAGATTGCTAAGTTACTTGAAGTTGGG 1350
Query 1584 AAGCATCCTTATGGTCGTAAACATG 1608
|||||||||||||||||||||||||
Sbjct 1351 AAGCATCCTTATGGTCGTAAACATG 1375
Score = 1744 bits (944), Expect = 0.0
Identities = 1054/1107 (95%), Gaps = 7/1107 (1%)
Strand=Plus/Plus
Query 1666 CTTCTTCGTCTGCTGCTGCTGCTGTTGTGCCACCTACTTATGCAGATATTGAAGAAGAGC 1725
|||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1379 CTTCTTCG--T-CTGCTACTGCTGTTGTGCCGCCTACTTATGCAGATATTGAAGAAGAGC 1435
Query 1726 TTGCTTCGAGGTCGAGGAATCTTTCTTCGACGTTGCACAAGCTCCATCTTTGGGAGAAGA 1785
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1436 TTGCTTCGAGGTCGAGGAATCTTTCTTCCACATTGCACAAGCTCCATCTTTGGGAGAAGA 1495
Query 1786 AGCTTTATCATGAAGTCAAGGCCGAGGAGAAACTGCGTCTAGCTCACGAGAAAAAGCTTA 1845
||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
Sbjct 1496 AGCTTTACCATGAAGTCAAGGCTGAGGAAAAATTGCGTCTAGCTCACGAGAAAAAGCTAA 1555
Query 1846 GGAAGCTAAAGCGTTTGGATCAAAGAGGTGCCGAGGCTATCAAAGTAGATAAAACGCGGA 1905
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GGAAGCTAAAGCGTTTGGATGAAAGAGGTGCCGAGGCTATCAAAGTAGATAAAACGCGGA 1615
Query 1906 AATTAGTGAGAGATATGTCCACAAAAATACGGATTGCGATTCAGGTTGTCGACAAAATAT 1965
|||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 1616 GATTAGTGAGAGATATGTCTACGAAAATTCGGATTGCGATTCAGGTTGTCGACAAAATAT 1675
Query 1966 CCGTGACGATTAATAAGATAAGAGACGAAGACCTGTGGCCGCAACTGAATGCATTGATTC 2025
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CTGTAACGATTAATAAGATAAGAGACGAAGACCTGTGGCCGCAACTGAATGCATTGATTC 1735
Query 2026 AAGGGCTTACAAGAATGTGGAAAACAATGCTTGAATGTCATCAAAGTCAATGTCAAGCTA 2085
||||||||||||||||||||| | | |||||||| |||||||||||||| ||||||||||
Sbjct 1736 AAGGGCTTACAAGAATGTGGACATCTATGCTTGAGTGTCATCAAAGTCAGTGTCAAGCTA 1795
Query 2086 TTAGGGAAGCACAAGGTTTAGGCCCGATAAGAGCAAGCAAGAAACTAGGCGATGAACATC 2145
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 1796 TTAGGGAAGCACAAGGTTTGGGACCGATAAGAGCAAGCAAGAAACTCGGCGATGAACATC 1855
Query 2146 TAGAAGCGACGAGTTTGCTTGGACATGAACTTATTAATTGGATATTGGGATTCTCTAGCT 2205
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 TAGAGGCGACGAGTTTGCTTGGACATGAACTTATTAATTGGATATTGGGATTCTCTAGCT 1915
Query 2206 GGGTTAGTGCGCAGAAGGGTTATGTAAAAGAGTTGAATAAATGGCTCATGAAATGTCTTC 2265
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 GGGTTAGCGCACAGAAGGGTTATGTAAAAGAGTTGAATAAATGGCTCATGAAATGTCTTC 1975
Query 2266 TGTATGAACCTGAGGAAACACCTGATGGGATAGTTCCCTTTTCACCTGGTAGGATTGGGG 2325
||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 1976 TGTATGAACCTGAGGAAACACCTGATGGGATCGTTCCTTTTTCACCTGGTCGGATTGGGG 2035
Query 2326 CTCCACCTATCTTTGTCATCTGTAACCAATGGTCTCAAGCTCTGGATAGGATATCTGAGA 2385
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2036 CTCCACCAATCTTTGTAATCTGTAACCAATGGTCTCAAGCTCTGGATAGGATATCCGAGA 2095
Query 2386 AGGAAGTTATTGAGGCAATGCGTAGTTTCACTACAAGTGTGCTTCAGCTTTGGGAACAAG 2445
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2096 AGGAAGTTATTGAGGCAATGCGTAGTTTCACTACAAGCGTGCTTCAGCTTTGGGAACAAG 2155
Query 2446 ATCGGTTAGATACGATGATGACGGGGCATGGTGATTcagagaagaaagtcaggaacatgg 2505
|||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||
Sbjct 2156 ATCGGTTAGATACGATGATGACAGGGCACGGGGATTCAGAGAAGAAAGTTAGGAACATGG 2215
Query 2506 acagagaagaacagaggatacagagagagaTTCAAGCATTGGAAAAGAAAATGATTCTTG 2565
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 ACCGAGAAGAACAGAGGATACAGAGAGAGATTCAAGCATTGGAAAAGAAAATGATTCTTG 2275
Query 2566 TGGCACCGGGTGATGGTAACAGTCTTTCGATATCCGGCAACGTTGTTTACCAAAGCGATA 2625
||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||||
Sbjct 2276 TGGCACCGGGTGATGGTAATAGTCTTTCGATATCCGGTAACATTGTCTACCAAAGCGATA 2335
Query 2626 CTAGCAGCGATAGTTTACAAGGTAGTTTGCAACGGATTTTTGAAGCTATGGAGAGATTCA 2685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2336 CTAGCAGCGATAGTTTACAAGGTAGTTTGCAACGGATTTTTGAAGCTATGGAGAGATTCA 2395
Query 2686 CTGCTGAATCGATGAGAGCTTATGAGGATCTCTTAGA-GCGCACC-AATGAAGAAACTGC 2743
|||||||||| ||||||||||||||||||||||| || ||||||| || |||||||||||
Sbjct 2396 CTGCTGAATCTATGAGAGCTTATGAGGATCTCTT-GAAGCGCACCGAA-GAAGAAACTGC 2453
Query 2744 ACCACGGGAACTTGAGGAAGAAGAGGA 2770
||||| ||||||||||||||||||||
Sbjct 2454 TCCACGAGAACTTGAGGAAGAAGAGGA 2480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121622152285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5